Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A

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• 作者：Simon Kelly ; John Sullivan ; Clive Ronson ; Rui Tian…
• 关键词：Root ; nodule bacteria ; Nitrogen fixation ; Symbiosis ; Alphaproteobacteria
• 刊名：Standards in Genomic Sciences
• 出版年：2014
• 出版时间：December 2014
• 年：2014
• 卷：9
• 期：1
• 全文大小：916KB
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• 作者单位：Simon Kelly (136)
  John Sullivan (136)
  Clive Ronson (136)
  Rui Tian (137)
  Lambert Br盲u (138)
  Christine Munk (139)
  Lynne Goodwin (139)
  Cliff Han (139)
  Tanja Woyke (140)
  Tatiparthi Reddy (140)
  Marcel Huntemann (140)
  Amrita Pati (140)
  Konstantinos Mavromatis (141)
  Victor Markowitz (141)
  Natalia Ivanova (140)
  Nikos Kyrpides (140) (142)
  Wayne Reeve (137)
  
  136. Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand
  137. Centre for Rhizobium Studies, Murdoch University, Perth, Australia
  138. School of Life and Environmental Sciences, Deakin University, Melbourne, Australia
  139. Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
  140. DOE Joint Genome Institute, Walnut Creek, California, USA
  141. Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA
  142. Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia
  
• 刊物类别：Microbial Genetics and Genomics; Plant Genetics & Genomics; Animal Genetics and Genomics;
• 刊物主题：Microbial Genetics and Genomics; Plant Genetics & Genomics; Animal Genetics and Genomics;
• 出版者：BioMed Central
• ISSN：1944-3277

文摘

Mesorhizobium loti strain R7A was isolated in 1993 in Lammermoor, Otago, New Zealand from a Lotus corniculatus root nodule and is a reisolate of the inoculant strain ICMP3153 (NZP2238) used at the site. R7A is an aerobic, Gram-negative, non-spore-forming rod. The symbiotic genes in the strain are carried on a 502-kb integrative and conjugative element known as the symbiosis island or ICEMlSymR7A. M. loti is the microsymbiont of the model legume Lotus japonicus and strain R7A has been used extensively in studies of the plant-microbe interaction. This report reveals that the genome of M. loti strain R7A does not harbor any plasmids and contains a single scaffold of size 6,529,530 bp which encodes 6,323 protein-coding genes and 75 RNA-only encoding genes. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project. Keywords Root-nodule bacteria Nitrogen fixation Symbiosis Alphaproteobacteria