Microbiological diagnostic procedures for respiratory cystic fibrosis samples in Spain: towards standard of care practices
详细信息    查看全文
  • 作者:Juan de Dios Caballero (1) (2)
    Rosa del Campo (1) (2)
    Marta Tato (1) (2)
    Elia G贸mez G de la Pedrosa (1) (2)
    Marta Cobo (1)
    Carla L贸pez-Causap茅 (2) (3)
    Enrique G贸mez-Mampaso (1)
    Antonio Oliver (2) (3)
    Rafael Cant贸n (1) (2)
    Spanish Network for Cystic Fibrosis Microbiology Laboratories

    1. Servicio de Microbiolog铆a
    ; Hospital Universitario Ram贸n y Cajal and Instituto Ram贸n y Cajal de Investigaciones Sanitarias (IRYCIS) ; Madrid ; 28034 ; Spain
    2. Red Espa帽ola de Investigaci贸n en Patolog铆a Infecciosa (REIPI)
    ; Madrid ; Spain
    3. Servicio de Microbiolog铆a y Unidad de Investigaci贸n
    ; Hospital Universitario Son Espases ; Instituto de Investigaci贸n Sanitaria de Palma (IdISPa) ; Palma de Mallorca ; Spain
  • 关键词:Cystic fibrosis ; Microbiology ; Laboratory procedures ; Respiratory samples ; Consensus guidelines
  • 刊名:BMC Microbiology
  • 出版年:2014
  • 出版时间:December 2014
  • 年:2014
  • 卷:14
  • 期:1
  • 全文大小:965 KB
  • 参考文献:1. Rosenstein, BJ, Zeitlin, PL (1998) Cystic fibrosis. Lancet 351: pp. 277-282 CrossRef
    2. Gilligan, PH (2014) Infections in patients with cystic fibrosis: diagnostic microbiology update. Clin Lab Med 34: pp. 197-217 CrossRef
    3. Lipuma, JJ (2010) The changing microbial epidemiology in cystic fibrosis. Clin Microbiol Rev 23: pp. 299-323 CrossRef
    4. Conway, S, Balfour-Lynn, IM, Rijcke, K, Drevinek, P, Foweraker, J, Havermans, T, Heijerman, H, Lannefors, L, Lindblad, A, Macek, M, Madge, S, Moran, M, Morrison, L, Morton, A, Noordhoek, J, Sands, D, Vertommen, A, Peckham, D (2014) European cystic fibrosis society standards of care: framework for the cystic fibrosis centre. J Cyst Fibros 13: pp. S3-S22 CrossRef
    5. Stern, M, Bertrand, DP, Bignamini, E, Corey, M, Dembski, B, Goss, CH, Pressler, T, Rault, G, Viviani, L, Elborn, JS, Castellani, C (2014) European cystic fibrosis society standards of care: quality management in cystic fibrosis. J Cyst Fibros 13: pp. S43-S59 CrossRef
    6. Oliver, A (2010) Mutators in cystic fibrosis chronic lung infection: prevalence, mechanisms, and consequences for antimicrobial therapy. Int J Med Microbiol 300: pp. 563-572 CrossRef
    7. Oliver, A, Mena, A (2010) Bacterial hypermutation in cystic fibrosis, not only for antibiotic resistance. Clin Microbiol Infect 16: pp. 798-808 CrossRef
    8. Besier, S, Smaczny, C, Mallinckrodt, C, Krahl, A, Ackermann, H, Brade, V, Wichelhaus, TA (2007) Prevalence and clinical significance of Staphylococcus aureus small-colony variants in cystic fibrosis lung disease. J Clin Microbiol 45: pp. 168-172 CrossRef
    9. Wolter, DJ, Emerson, JC, McNamara, S, Buccat, AM, Qin, X, Cochrane, E, Houston, LS, Rogers, GB, Marsh, P, Prehar, K, Pope, CE, Blackledge, M, D茅ziel, E, Bruce, KD, Ramsey, BW, Gibson, RL, Burns, JL, Hoffman, LR (2013) Staphylococcus aureus small-colony variants are independently associated with worse lung disease in children with cystic fibrosis. Clin Infect Dis 57: pp. 384-391 CrossRef
    10. Saiman, L, Siegel, JD, LiPuma, JJ, Brown, RF, Bryson, EA, Chambers, MJ, Downer, VS, Fliege, J, Hazle, LA, Jain, M, Marshall, BC, O鈥橫alley, C, Pattee, SR, Potter-Bynoe, G, Reid, S, Robinson, KA, Sabadosa, KA, Schmidt, HJ, Tullis, E, Webber, J, Weber, DJ (2014) Infection prevention and control guideline for cystic fibrosis: 2013 update. Infect Control Hosp Epidemiol 35: pp. S1-S67 CrossRef
    11. Shreve, MR, Butler, S, Kaplowitz, HJ, Rabin, HR, Stokes, D, Light, M, Regelmann, WE (1999) Impact of microbiology practice on cumulative prevalence of respiratory tract bacteria in patients with cystic fibrosis. J Clin Microbiol 37: pp. 753-757
    12. H盲fner, L, Peters, G, Kahl, BC (2014) Assessment of microbiological diagnostic procedures for respiratory specimens from cystic fibrosis patients in German laboratories by use of a questionnaire. J Clin Microbiol 52: pp. 977-979 CrossRef
    13. Zhou, J, Garber, E, Desai, M, Saiman, L (2006) Compliance of clinical microbiology laboratories in the United States with current recommendations for processing respiratory tract specimens from patients with cystic fibrosis. J Clin Microbiol 44: pp. 1547-1549 CrossRef
    14. Alarc贸n T, Caballero T, Cant贸n R, Oliver A: Diagn贸stico de la colonizaci贸n-infecci贸n broncopulmonar en el paciente con fibrosis qu铆stica. In / Procedimientos en microbiolog铆a cl铆nica 2007. cap. 28. Edited by Cercenado E, Cant贸n R. Available from Sociedad Espa帽ola de Enfermedades Infecciosas y Microbiolog铆a Cl铆nica (SEIMC): http://www.seimc.org/contenidos/documentoscientificos/procedimientosmicrobiologia/seimc-procedimientomicrobiologia28.pdf
    2010 Annual Data Report.
    15. Cant贸n R, M谩iz L, Escribano A, Oliveira C, Oliver A, Asensio O, Gartner S, Roma E, Quintana-Gallego E, Salcedo A, Gir贸n R, Barrio MI, Pastor MD, Prados MC, Mart铆nez-Mart铆nez MT, Barber谩n J, Cast贸n J, Mart铆nez-Mart铆nez L, Poveda JL, V谩zquez C, de Gracia J, Sol茅 A: Consenso espa帽ol para la prevenci贸n y el tratamiento de la infecci贸n bronquial por Pseudomonas aeruginosa en el paciente con fibrosis qu铆stica. / Arch Bronconeumol 2015, / accepted for publication.
    16. Balke, B, Schmoldt, S, H盲ussler, S, Suerbaum, S, Heesemann, J, Hogardt, M (2008) A German external quality survey of diagnostic microbiology of respiratory tract infections in patients with cystic fibrosis. J Cyst Fibros 7: pp. 7-14 CrossRef
    17. Miller, MB, Gilligan, PH (2003) Laboratory aspects of management of chronic pulmonary infections in patients with cystic fibrosis. J Clin Microbiol 41: pp. 4009-4015 CrossRef
    18. Maci谩, MD, Borrell, N, P茅rez, JL, Oliver, A (2004) Detection and susceptibility testing of hypermutable Pseudomonas aeruginosa strains with the Etest and disk diffusion. Antimicrob Agents Chemother 48: pp. 2665-2672 CrossRef
    19. Smyth, AR, Bell, SC, Bojcin, S, Bryon, M, Duff, A, Flume, P, Kashirskaya, N, Munck, A, Ratjen, F, Schwarzenberg, SJ, Sermet-Gaudelus, I, Southern, KW, Taccetti, G, Ullrich, G, Wolfe, S (2014) European cystic fibrosis society standards of care: best practice guidelines. J Cyst Fibros 13: pp. S23-S42 CrossRef
    20. Shelly, DB, Spilker, T, Gracely, EJ, Coenye, T, Vandamme, P, LiPuma, JJ (2000) Utility of commercial systems for identification of Burkholderia cepacia complex from cystic fibrosis sputum culture. J Clin Microbiol 38: pp. 3112-3115
    21. Fern谩ndez-Olmos, A, Garc铆a-Castillo, M, Morosini, MI, Lamas, A, M谩iz, L, Cant贸n, R (2012) MALDI-TOF MS improves routine identification of non-fermenting Gram negative isolates from cystic fibrosis patients. J Cyst Fibros 11: pp. 59-62 CrossRef
    22. Lambiase, A, Pezzo, M, Cerbone, D, Raia, V, Rossano, F, Catania, MR (2013) Rapid identification of Burkholderia cepacia complex species recovered from cystic fibrosis patients using matrix-assisted laser desorption ionization time-of-flight mass spectrometry. J Microbiol Methods 92: pp. 145-149 CrossRef
    23. Posteraro, B, Carolis, E, Vella, A, Sanguinetti, M (2013) MALDI-TOF mass spectrometry in the clinical mycology laboratory: identification of fungi and beyond. Expert Rev Proteomics 10: pp. 151-164 CrossRef
    24. Chen, JH, Yam, WC, Ngan, AH, Fung, AM, Woo, WL, Yan, MK, Choi, GK, Ho, PL, Cheng, VC, Yuen, KY (2013) Advantages of using matrix-assisted laser desorption ionization-time of flight mass spectrometry as a rapid diagnostic tool for identification of yeasts and mycobacteria in the clinical microbiological laboratory. J Clin Microbiol 51: pp. 3981-3987 CrossRef
    25. Burns, JL, Saiman, L, Whittier, S, Larone, D, Krzewinski, J, Liu, Z, Marshall, SA, Jones, RN (2000) Comparison of agar diffusion methodologies for antimicrobial susceptibility testing of Pseudomonas aeruginosa isolates from cystic fibrosis patients. J Clin Microbiol 38: pp. 1818-1822
    26. Wainwright, CE, France, MW, O鈥橰ourke, P, Anuj, S, Kidd, TJ, Nissen, MD, Sloots, TP, Coulter, C, Ristovski, Z, Hargreaves, M, Rose, BR, Harbour, C, Bell, SC, Fennelly, KP (2009) Cough-generated aerosols of Pseudomonas aeruginosa and other Gram-negative bacteria from patients with cystic fibrosis. Thorax 64: pp. 926-931 CrossRef
    27. Bryant, JM, Grogono, DM, Greaves, D, Foweraker, J, Roddick, I, Inns, T, Reacher, M, Haworth, CS, Curran, MD, Harris, SR, Peacock, SJ, Parkhill, J, Floto, RA (2013) Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study. Lancet 381: pp. 1551-1560 CrossRef
    28. Leung, JM, Olivier, KN (2013) Nontuberculous mycobacteria: the changing epidemiology and treatment challenges in cystic fibrosis. Curr Opin Pulm Med 19: pp. 662-669 CrossRef
    29. Bel, A, Geyter, D, Schutter, I, Mouton, C, Wellemans, I, Hanssens, L, Schelstraete, P, Malfroot, A, Pierard, D (2013) Sampling and decontamination method for culture of nontuberculous mycobacteria in respiratory samples of cystic fibrosis patients. J Clin Microbiol 51: pp. 4204-4206 CrossRef
    30. Middleton, PG, Chen, SC, Meyer, W (2013) Fungal infections and treatment in cystic fibrosis. Curr Opin Pulm Med 19: pp. 670-675 CrossRef
    31. Borman, AM, Palmer, MD, Delhaes, L, Carr猫re, J, Favennec, L, Ranque, S, Gangneux, JP, Horr茅, R, Bouchara, JP (2010) Lack of standardization in the procedures for mycological examination of sputum samples from CF patients: a possible cause for variations in the prevalence of filamentous fungi. Med Mycol 48: pp. S88-S97 CrossRef
  • 刊物主题:Microbiology; Biological Microscopy; Fungus Genetics; Parasitology; Virology; Life Sciences, general;
  • 出版者:BioMed Central
  • ISSN:1471-2180
文摘
Background The microbiological procedures for cystic fibrosis (CF) samples of 17 participating Spanish centers were examined to verify their compliance with current international and national guidelines and to implement the best standards of care for microbiology practices. A 47-item questionnaire covering different CF microbiology aspects was sent to participant laboratories. Telephone interviews were performed when necessary. Data about samples processing for bacteria, mycobacteria and fungi were collected. Results Gene sequencing (71%), MALDI-TOF (59%) or both (94%) were available for most laboratories. Susceptibility testing was performed by automated microdilution systems (94%) and manual diffusion methods (59%). However, a low use of selective media for Staphylococcus aureus (59%) and Burkholderia cepacia complex (71%), and of epidemiological typing methods (41%) was reported. Conclusions Most Spanish laboratories are in agreement with consensus guidelines for the processing of CF respiratory samples, but need to improve in the use of specific selective media and typing methods for epidemiologic studies.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700