Molecular diversity, phylogeography and genetic relationships of the Silene paradoxa group of section Siphonomorpha (Caryophyllaceae)

详细信息    查看全文

• 作者：Marianne Leuzinger ; Yamama Naciri…
• 关键词：ITS ; Silene aristidis ; Silene fruticosa ; Speciation ; trnH–psbA ; trnS–trnG ; Demographic history
• 刊名：Plant Systematics and Evolution
• 出版年：2015
• 出版时间：January 2015
• 年：2015
• 卷：301
• 期：1
• 页码：265-278
• 全文大小：1,183 KB
• 参考文献：1. àlvarez I, Wendel JF (2003) Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol 29(3):417-34. doi:10.1016/S1055-7903(03)00208-2 CrossRef
  2. Avise JC (2009) Phylogeography: retrospect and prospect. J Biogeogr 36:3-5
  3. Bandelt HJ, Forster P, Rohl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16(1):37-8 CrossRef
  4. Barriel V (1994) Phylogénies moléculaires et insertions-délétions de nucléotides (Molecular phylogenies and how to code insertion/deletion events). C R Acad Sci Paris 317:693-01
  5. Birky CW (2008) Uniparental inheritance of organelle genes. Curr Biol 18(16):R692–R695. doi:10.1016/j.cub.2008.06.049 CrossRef
  6. Chater AO, Walters SM, Akeyrod JR (1993) / Silene L. In: Tutin TG, Burges NA, Chater AO et al. (eds) Flora europaea, vol 1. 2nd edn. University Press, Cambridge, pp 191-18
  7. Chowdhuri PK (1957) Studies in the genus / Silene. Notes of the Royal Botanic Gardens Edinburgh 22(3):221-78
  8. De Queiroz K (2007) Species concepts and species delimitation. Syst Biol 56:879-86
  9. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19(1):11-5
  10. Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10(3):564-67. doi:10.1111/j.1755-0998.2010.02847.x CrossRef
  11. Excoffier L, Laval G, Schneider S (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform 1:47-0
  12. Frajman B, Oxelman B (2007) Reticulate phylogenetics and phytogeographical structure of / Heliosperma (Sileneae, Caryophyllaceae) inferred from chloroplast and nuclear DNA sequences. Mol Phylogenet Evol 43(1):140-55. doi:10.1016/J.Ympev.2006.11.003 CrossRef
  13. Fu Y-X (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147(2):915-25
  14. Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes—application to the identification of mycorrhizae and rusts. Mol Ecol 2(2):113-18 CrossRef
  15. Greenberg AK, Donoghue MJ (2011) Molecular systematics and character evolution in Caryophyllaceae. Taxon 60(6):1637-652
  16. Greuter W (1995) / Silene (Caryophyllaceae) in Greece—a subgeneric and sectional classification. Taxon 44(4):543-81 CrossRef
  17. Greuter W (1997) / Silene L. In: Strid A, Tan K (eds) Flora Hellenica, vol 1. Koeltz Scientific Books, K?nigstein
  18. Grimm GW, Denk T (2010) The reticulate origin of modern plane trees ( / Platanus, Platanaceae): a nuclear marker puzzle. Taxon 59(1):134-47
  19. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-8
  20. Hamilton MB (1999) Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Mol Ecol 8(3):521-23
  21. Ingvarsson PK, Ribstein S, Taylor DR (2003) Molecular evolution of insertions and deletion in the chloroplast genome of / Silene. Mol Biol Evol 20(11):1737-740. doi:10.1093/Molbev/Msg163 CrossRef
  22. Jalas J, Suominen J (eds) (1986) Atlas florae Europaeae, distribution of vascular plants in Europe: 7. Caryophyllaceae (Silenoideae), Helsinki, p 229
  23. Jeanmonod D (1982) Nouvelle station du Silene aristidis Pomel en Algérie. Candollea 37:485-95
  24. Jeanmonod D (1984) Révision de la section / Siphonomorpha Otth du genre / Silene L. (Caryophyllaceae) en Méditerranée occidentale. II: le groupe du / S. mollissima (Revision of the section / Siphonomorpha Otth of the genus / Silene
• 作者单位：Marianne Leuzinger (1) (2)
  Yamama Naciri (1) (3)
  Pierre-Emmanuel Du Pasquier (1) (3)
  Daniel Jeanmonod (1) (3)
  
  1. Unité de Phylogénie et Génétique Moléculaires, Conservatoire et Jardin botaniques, 1292, Chambésy, Geneva, Switzerland
  2. Institute of Integrative Biology, ETH Zurich, 8092, Zurich, Switzerland
  3. Laboratoire de Systématique Végétale et Biodiversité, University of Geneva, 1292, Chambésy, Geneva, Switzerland
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Plant Sciences
  Plant Ecology
  Plant Anatomy and Development
  Plant Systematics/Taxonomy/ Biogeography
  
• 出版者：Springer Wien
• ISSN：1615-6110

文摘

We investigate the genetic diversity and demographic patterns of the Silene paradoxa group from section Siphonomorpha, which includes the three species S. paradoxa, S. fruticosa and S. aristidis. Eight additional taxa, belonging to the same section, were also included in this study for comparative purposes: S. nutans, S. viridiflora and six species of the italica complex. The nuclear internal transcribed spacer (ITS) and the two chloroplast spacers trnH-em class="a-plus-plus">psbA and trnS-em class="a-plus-plus">trnG show that the paradoxa group constitutes a separate genetic lineage within section Siphonomorpha and includes three well-differentiated species, characterized by different levels of genetic diversity and demographic histories. All three species showed specific haplotypes and ITS variants, intraspecific variation and contrasting demographic histories. S. paradoxa probably followed a demographic expansion scenario, whereas S. fruticosa and S. aristidis most likely went through spatial expansions in the past. Chasmophyte species and species from open rocky habitats are found in both the paradoxa group and the italica complex, suggesting that the switch between the chasmophytic and open habitats occurred at least twice in the Siphonomorpha section.