Novel Development of a qPCR Assay Based on the rpoB Gene for Rapid Detection of Cronobacter spp.
详细信息    查看全文
  • 作者:Yuanhong Li ; Qiming Chen ; Hua Jiang ; Yang Jiao ; Fengxia Lu…
  • 刊名:Current Microbiology
  • 出版年:2016
  • 出版时间:April 2016
  • 年:2016
  • 卷:72
  • 期:4
  • 页码:436-443
  • 全文大小:410 KB
  • 参考文献:1.Adekambi T, Drancourt M, Raoult D (2009) The rpoB gene as a tool for clinical microbiologists. Trends Microbiol 17(1):37–45CrossRef PubMed
    2.Ahmed AM, Shimamoto T (2014) Isolation and molecular characterization of Salmonella enterica, Escherichia coli O157:H7 and Shigella spp. from meat and dairy products in Egypt. Int J Food Microbiol 168:57–62CrossRef PubMed
    3.Bowen AB, Braden CR (2006) Invasive Enterobacter sakazakii disease in infants. Emerg Infect Dis 12(8):1185–1189PubMedCentral CrossRef PubMed
    4.Brady C, Cleenwerck I, Venter S, Coutinho T, De VP (2013) Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): Proposal to reclassify E. nimipressuralis and E. amnigenus into Lelliottia gen. nov as Lelliottia nimipressuralis comb. nov and Lelliottia amnigena comb. nov., respectively, E. gergoviae and E. pyrinus into Pluralibacter gen. nov as Pluralibacter gergoviae comb. nov and Pluralibacter pyrinus comb. nov., respectively, E. cowanii, E. radicincitans, E. oryzae and E. arachidis into Kosakonia gen. nov as Kosakonia cowanii comb. nov., Kosakonia radicincitans comb. nov., Kosakonia oryzae comb. nov and Kosakonia arachidis comb. nov., respectively, and E. turicensis, E. helveticus and E. pulveris into Cronobacter as Cronobacter zurichensis nom. nov., Cronobacter helveticus comb. nov and Cronobacter pulveris comb. nov., respectively, and emended description of the genera Enterobacter and Cronobacter. Syst Appl Microbiol 36(5):309–319
    5.Carter L, Lindsey LA, Grim CJ, Sathyamoorthy V, Jarvis KG, Gopinath G, Lee C, Sadowski JA, Trach L, Pava-Ripoll M, McCardell BA, Tall BD, Hu L (2013) Multiplex PCR assay targeting a diguanylate cyclase-encoding gene, cgcA, to differentiate species within the genus Cronobacter. Appl Environ Microbiol 79(2):734–737PubMedCentral CrossRef PubMed
    6.Chen QM, Tao TT, Bie XM, Lu YJ, Lu FX, Zhai LG, Lu ZX (2015) Mining for sensitive and reliable species-specific primers for PCR for detection of Cronobacter sakazakii by a bioinformatics approach. J Dairy Sci 98(8):5091–5101CrossRef
    7.Chenu JW, Cox JM (2009) Cronobacter (Enterobacter sakazakii): current status and future prospects. Letters Appli Microbiol 49(2):153–159CrossRef
    8.El-Sharoud WM, O’Brien S, Negredo C, Iversen C, Fanning S, Healy B (2009) Characterization of Cronobacter recovered from dried milk and related products. BMC Microbiol 9:24PubMedCentral CrossRef PubMed
    9.Hoorfar J, Malorny B, Abdulmawjood A, Cook N, Wagner M, Fach P (2004) Practical considerations in design of internal amplification controls for diagnostic PCR assays. J Clin Microbiol 42(5):1863–1868PubMedCentral CrossRef PubMed
    10.International Organization Standardization (ISO) (2006) Milk and milk products-detection of Enterobacter sakazakii. www.​iso.​org/​iso/​home/​store/​catalogue_​tc/​catalogue_​detail.​htm ? csnumber = 41258
    11.Iversen C, Mullane N, McCardell B, Tall BD, Lehner A, Fanning S, Stephan R, Joosten H (2008) Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov. Int J Syst Evol Microbiol 58(6):1442–1447CrossRef PubMed
    12.Joseph S, Cetinkaya E, Drahovska H, Levican A, Figueras MJ, Forsythe SJ (2012) Cronobacter condimenti sp nov., isolated from spiced meat, and Cronobacter universalis sp nov., a species designation for Cronobacter sp genomospecies 1, recovered from a leg infection, water and food ingredients. Int J Syst Evol Microbiol 62:1277–1283CrossRef PubMed
    13.Kandhai MC, Heuvelink AE, Reij MW, Beumer RR, Dijk R, van Tilburg JJHC, van Schothorst M, Gorris LGM (2010) A study into the occurrence of Cronobacter spp. in The Netherlands between 2001 and 2005. Food Control 21(8):1127–1136CrossRef
    14.Krascsenicsova K, Trncikova T, Kaclikova E (2008) Detection and quantification of Enterobacter sakazakii by real-time 5 ‘-nuclease polymerase chain reaction targeting the palE gene. Food Anal Method 1(2):85–94CrossRef
    15.Lampel KA, Chen Y (2009) Method for the isolation and detection of Enterobacter sakazakii (Cronobacter) from powdered infant formula. Int J Food Microbiol 136(2):179–184CrossRef PubMed
    16.Lehner A, Fricker-Feer C, Stephan R (2012) Identification of the recently described Cronobacter condimenti by an rpoB-gene-based PCR system. J Med Microbiol 61(7):1034–1035CrossRef PubMed
    17.Lehner A, Tasara T, Stephan R (2004) 16S rRNA gene based analysis of Enterobacter sakazakii strains from different sources and development of a PCR assay for identification. BMC Microbiol 4:43PubMedCentral CrossRef PubMed
    18.Li YH, Cao L, Zhang C, Chen QM, Lu FX, Bie XM, Lu ZX (2013) Development and evaluation of a PCR-ELISA assay for the detection and quantification of Cronobacter spp. Int Dairy J 33(1):27–33CrossRef
    19.Li YH, Cao L, Zhao JF, Cheng QM, Lu FX, Bie XM, Lu ZX (2012) Use of rpoB gene sequence analysis for phylogenetic identification of Cronobacter species. J Microbiol Meth 88(2):316–318CrossRef
    20.Li YH, Chen QM, Zhao JF, Jiang H, Lu FX, Bie XM, Lu ZX (2014) Isolation, identification and antimicrobial resistance of Cronobacter spp. isolated from various foods in China. Food Control 37:109–114CrossRef
    21.Liu X, Fang JH, Zhang MZ, Wang XY, Wang WF, Gong YF, Xi X, Li MJ (2012) Development of a loop-mediated isothermal amplification assay for detection of Cronobacter spp. (Enterobacter sakazakii). World J Microb Biot 28(3):1013–1020CrossRef
    22.Liu X, Fang JH, Zhang MZ, Wang XY, Wang WF, Gong YF, Xi X, Li MJ (2012) Real time PCR using TaqMan and SYBR Green for detection of Enterobacter sakazakii in infant formula. J Microbiol Meth 65(1):21–31CrossRef
    23.Mafu AA, Pitre M, Sirois S (2009) Real-time PCR as a tool for detection of pathogenic bacteria on contaminated food contact surfaces by using a single enrichment medium. J Food Protect 72(6):1310–1314
    24.Nair MK, Venkitanarayanan KS (2006) Cloning and sequencing of the ompA gene of Enterobacter sakazakii and development of an ompA-targeted PCR for rapid detection of Enterobacter sakazakii in infant formula. Appl Environ Microb 72(4):2539–2546CrossRef
    25.Reich F, Konig R, von Wiese W et al (2010) Prevalence of Cronobacter spp. in a powdered infant formula processing environment. Int J Food Microbiol 140(2–3):214–217CrossRef PubMed
    26.Reina J, Parras F, Gil J (1989) Human infections caused by Enterobacter sakazakii. Microbiologic considerations. Enferm Infecc Microbiol Clin 7(3):147–150PubMed
    27.Seo KH, Brackett RE (2005) Rapid, specific detection of Enterobacter sakazakii in infant formula using a real-time PCR assay. J Food Protect 68(1):59–63
    28.Stoop B, Lehner A, Iversen C, Fanning S, Stephan R (2009) Development and evaluation of rpoB based PCR systems to differentiate the six proposed species within the genus Cronobacter. Int J Food Microbiol 136(2):165–168CrossRef PubMed
    29.Strydom A, Cameron M, Witthuhn RC (2011) PCR-RFLP analysis of the rpoB gene to distinguish the five species of Cronobacter. Food Microbiol 28(8):1472–1477CrossRef PubMed
    30.Wang M, Cao BY, Gao QL, Sun YM, Liu P, Feng L, Wang L (2009) Detection of Enterobacter sakazakii and other pathogens associated with infant formula powder by use of a DNA microarray. J Clin Microbiol 47(10):3178–3184PubMedCentral CrossRef PubMed
    31.Wang X, Zhu CQ, Xu XL, Zhou GH (2012) Real-time PCR with internal amplification control for the detection of Cronobacter spp. (Enterobacter sakazakii) in food samples. Food Control 25(1):144–149CrossRef
    32.Ye YW, Wu QP, Zhou YH, Dong XH, Zhang JM (2008) Analysis of major band of Enterobacter sakazakii by ERIC-PCR and development of a species-specific PCR for detection of Ent. sakazakii in dry food samples. J Microbiol Meth 75(3):392–397CrossRef
    33.Zhang Z, Kermekchiev MB, Barnes WM (2010) Direct DNA amplification from crude clinical samples using a PCR enhancer cocktail and novel mutants of Taq. J Mol Diagn 12(2):152–161PubMedCentral CrossRef PubMed
    34.Zhao X, Lin CW, Wang J, Oh DH (2014) Advances in rapid detection methods for foodborne pathogens. J Microbiol Biotechn 24(3):297–312CrossRef
  • 作者单位:Yuanhong Li (1) (2)
    Qiming Chen (1)
    Hua Jiang (1) (2)
    Yang Jiao (2)
    Fengxia Lu (1)
    Xiaomei Bie (1)
    Zhaoxin Lu (1)

    1. College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Jiangsu, 210095, Nanjing, People’s Republic of China
    2. School of Public Health, Xuzhou Medical College, 209 Tongshan Road, Xuzhou, 221004, Jiangsu, People’s Republic of China
  • 刊物类别:Biomedical and Life Sciences
  • 刊物主题:Life Sciences
    Microbiology
    Biotechnology
  • 出版者:Springer New York
  • ISSN:1432-0991
文摘
A novel real-time PCR (qPCR) assay with internal amplification control based on the rpoB gene was developed for the detection and quantification of Cronobacter spp. Inclusivity and exclusivity of the qPCR assay were tested on a strain collection containing 19 Cronobacter and 26 non-Cronobacter strains. All Cronobacter strains were successfully identified, whereas no cross-reactivity was observed with non-Cronobacter strains. The sensitivity of the qPCR assay for pure culture and powdered infant formula (PIF) without enrichment was 3.44 log CFU/ml(g) (2.74 × 103 CFU/ml(g)). When the qPCR assay was applied to artificially contaminated PIF after a 12-h enrichment step, as few as 0.03 log CFU/ml (1.06 × 100 CFU/ml) of C. sakazakii could be detected. The limit of detection of the qPCR assay was not reduced by the presence of 8 log CFU/ml of Salmonella Enteritidis in PIF. A total of 70 food samples were analyzed for the presence of Cronobacter spp., out of which 3 dry cereal products, 5 maternal milk, and 1 infant food formula were found as positive by qPCR. The results obtained by qPCR were consistent with those obtained by culture-based method. Results from this study demonstrate that the qPCR assay is a rapid, specific, and accurate method suitable for Cronobacter detection in foods.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700