A high-resolution genetic linkage map of soybean based on 357 recombinant inbred lines genotyped with BARCSoySNP6K
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- 作者：Sungwoo Lee ; Keith R. Freewalt ; Leah K. McHale ; Qijian Song…
- 关键词：Soybean ; Genetic map ; High ; throughput SNP genotyping ; BARCSoySNP6K ; Recombinant inbred line
- 刊名：Molecular Breeding
- 出版年：2015
- 出版时间：February 2015
- 年：2015
- 卷：35
- 期：2
- 全文大小：446 KB
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14. Kim MY, Lee S, Van K, Kim T, Jeong S, Choi I, Kim D, Lee Y, Park D, Ma J, Kim W, Kim B, Park S, Lee K, Kim DH, Kim KH, Shin JH, Jang YE, Kim KD, Liu WX, Chaisan T, Kang YJ, Lee Y, Kim K, Moon J, Schmutz J, Jackson SA, Bhak J, Lee S (2010) Whole-genome sequencing and intensive analysis of the undomesticated soybean ( / Glycine soja Sieb. and Zucc.) genome. Proc Natl Acad Sci USA 107:22032-2037- 作者单位：Sungwoo Lee (1)
Keith R. Freewalt (2)
Leah K. McHale (3)
Qijian Song (4)
Tae-Hwan Jun (1) (5)
Andrew P. Michel (1)
Anne E. Dorrance (6)
M. A. Rouf Mian (2) (7)
1. Department of Entomology, The Ohio State University, 1680 Madison Avenue, Wooster, OH, 44691, USA
2. Department of Horticulture and Crop Science, The Ohio State University, 1680 Madison Avenue, Wooster, OH, 44691, USA
3. Department of Horticulture and Crop Science, The Ohio State University, 2021 Coffey Road, Columbus, OH, 43210, USA
4. Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, 20705, USA
5. Department of Plant Bioscience, Pusan National University, Busan, 609-735, South Korea
6. Department of Plant Pathology, The Ohio State University, 1680 Madison Avenue, Wooster, OH, 44691, USA
7. Corn Soybean Wheat Quality Research Unit, USDA-ARS, Wooster, OH, USA- 刊物类别：Biomedical and Life Sciences
- 刊物主题：Life Sciences
Plant Sciences- 出版者：Springer Netherlands
- ISSN：1572-9788
- 作者单位：Sungwoo Lee (1)
文摘
The objective of this study was to construct a high-density genetic map of soybean (Glycine max L. Merr) using a high-throughput single nucleotide polymorphism (SNP) genotyping on 357 F7 recombinant inbred lines from a cross of ‘Wyandot’?×?PI 567301B. Of 5,403 SNP loci scored from the Infinium BARCSoySNP6K BeadChip array, 2,585 (48?%) were polymorphic between the two parents and subsequently 2,563 SNPs remained after filtering for minor allele frequency, heterozygosity, and missing data. A total of 2,545 SNPs were mapped into 20 linkage groups corresponding to the 20 chromosomes of soybean. The total length of the map was 2,346?cM with 2,213 unique SNP loci with 86 to 162 unique loci per chromosome. Average marker interval ranged from 0.9 to 1.3?cM with an overall mean of 1.1?cM, but 22 marker intervals were still greater than 10?cM. Colinear relationship was observed between genetic (cM) and physical positions (Mb) of SNPs for most of the genome, highlighting the improvements in the updated soybean genome assembly Glyma.Wm82.a2 in comparison with the previous Glyma.Wm82.a1. This high-density genetic map shows the utility of the BARCSoySNP6K BeadChip array and will lead to a better understanding of the genetic architecture of complex traits and identification of SNPs tightly linked to QTL for many important soybean traits.