Oenococcus alcoholitolerans sp. nov., a lactic acid bacteria isolated from cacha?a and ethanol fermentation processes

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• 作者：Fernanda Badotti (1)
  Ana Paula B. Moreira (2)
  Luciane A. Chimetto Tonon (2)
  Brígida T. Luckwu de Lucena (3)
  Fátima de Cássia O. Gomes (4)
  Ricardo Kruger (5)
  Cristiane C. Thompson (2)
  Marcos Antonio de Morais Jr. (6)
  Carlos A. Rosa (1)
  Fabiano L. Thompson (7)
  
• 关键词：Oenococcus alcoholitolerans ; Cacha?a ; Ethanol ; Genomic taxonomy
• 刊名：Antonie van Leeuwenhoek
• 出版年：2014
• 出版时间：December 2014
• 年：2014
• 卷：106
• 期：6
• 页码：1259-1267
• 全文大小：520 KB
• 参考文献：1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215(3):403-10 CrossRef
  2. Altschul SF, Madden TL, Sch?ffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25(17):3389-402 CrossRef
  3. Auch AF, Klenk H-P, G?ker M (2010a) Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs. Stand Genomic Sci 2(1):142-48. doi:10.4056/sigs.541628 CrossRef
  4. Auch AF, Klenk H-P, G?ker M (2010b) Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2(1):117-34. doi:10.4056/sigs.531120 CrossRef
  5. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9(1):75. doi:10.1186/1471-2164-9-75 CrossRef
  6. Badotti F, Gomes F, Rosa C (2012) Brazilian cacha?a: fermentation and production. In: Hui YH, Evranuz E?, Hansen AS (eds) Handbook of plant-based fermented food and beverage technology, 2nd edn. CRC Press, Boca Raton, pp 639-48 CrossRef
  7. Beckner M, Ivey ML, Phister TG (2011) Microbial contamination of fuel ethanol fermentations. Lett Appl Microbiol 53(4):387-94 CrossRef
  8. Borneman AR, McCarthy JM, Chambers PJ, Bartowsky EJ (2012) Functional divergence in the genus / Oenococcus as predicted by genome sequencing of the newly-described species, / Oenococcus kitaharae. PLoS ONE 7(1):e29626 CrossRef
  9. Carvalho-Neto O, Rosa DD, Camargo LEA (2008) Identification of contaminant bacteria in cacha?a yeast by 16S rDNA gene sequencing. Sci Agric 65:508-15 CrossRef
  10. Chang IS, Kim BH, Shin PK, Lee WK (1995) Bacterial contamination and its effects on ethanol fermentation. J Microbiol Biotechnol 5(6):309-14
  11. Dicks LMT, Dellaglio F, Collins MD (1995) Proposal to reclassify / Leuconostoc Oenos as / Oenococcus Oeni [corrig] gen-nov, comb-nov. Int J Syst Evol Microbiol 45(2):395-97
  12. Endo A, Okada S (2006) / Oenococcus kitaharae sp nov., a non-acidophilic and non-malolactic-fermenting oenococcus isolated from a composting distilled shochu residue. Int J Syst Evol Microbiol 56:2345-348 CrossRef
  13. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39(3):224-29 CrossRef
  14. FAOSTAT (2013) http://www.faostat.fao.org/site/339/default.aspx. Accessed 15/Jul/2014
  15. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17(6):368-76 CrossRef
  16. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39(4):783-91 CrossRef
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• 作者单位：Fernanda Badotti (1)
  Ana Paula B. Moreira (2)
  Luciane A. Chimetto Tonon (2)
  Brígida T. Luckwu de Lucena (3)
  Fátima de Cássia O. Gomes (4)
  Ricardo Kruger (5)
  Cristiane C. Thompson (2)
  Marcos Antonio de Morais Jr. (6)
  Carlos A. Rosa (1)
  Fabiano L. Thompson (7)
  
  1. Departamento de Microbiologia, Instituto de Ciências Biológicas (ICB), Universidade Federal de Minas Gerais, C.P. 486, Belo Horizonte, MG, 31270-901, Brazil
  2. Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, 21941-599, Brazil
  3. Centro de Ciências Biológicas e Sociais Aplicadas, Universidade Estadual da Paraíba, Jo?o Pessoa, Brazil
  4. Departamento de Química, Centro Federal de Educa??o Tecnológica de Minas Gerais, Belo Horizonte, Brazil
  5. Laboratório de Enzimologia, Departamento de Biologia Celular, Instituto de Biologia, Universidade de Brasília, Brasília, Brazil
  6. Departamento de Genética, Universidade Federal de Pernambuco, Recife, Brazil
  7. Instituto de Biologia and Laboratório de Sistemas Avan?ados de Gest?o da Produ??o - SAGE/ COPPE, Universidade Federal do Rio de Janeiro, Rio de Janeiro, 21941-972, Brazil
  
• ISSN：1572-9699

文摘

Four strains of lactic acid bacteria isolated from cacha?a and alcohol fermentation vats in Brazil were characterised in order to determine their taxonomic position. Phylogenetic analysis revealed that they belong to the genus Oenococcus and should be distinguished from their closest neighbours. The 16S rRNA gene sequence similarity against the type strains of the other two species of the genus was below 94.76?% (Oenococcus kitaharae) and 94.62?% (Oenococcus oeni). The phylogeny based on pheS gene sequences also confirmed the position of the new taxon. DNA–DNA hybridizations based on in silico genome-to-genome comparison, Average Amino Acid Identity, Average Nucleotide Identity and Karlin genomic signature confirmed the novelty of the taxon. Distinctive phenotypic characteristics are the ability to metabolise sucrose but not trehalose. The name Oenococcus alcoholitolerans sp. nov. is proposed for this taxon, with the type strain UFRJ-M7.2.18T (?=?CBAS474T?=?LMG27599T). In addition, we have determined a draft genome sequence of the type strain.