Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis
详细信息 查看全文
- 作者：Vincent P Richards (1)
Ruth N Zadoks (2) (4)
Paulina D Pavinski Bitar (1)
Tristan Lefébure (1) (5)
Ping Lang (6)
Brenda Werner (2)
Linda Tikofsky (2) (7)
Paolo Moroni (2) (3)
Michael J Stanhope (1) - 关键词：Streptococcus canis ; Comparative genomics ; Pathogen ; Zoonotic ; Mastitis ; Lateral gene transfer ; Host adaptation ; Bovine ; Canine
- 刊名：BMC Microbiology
- 出版年：2012
- 出版时间：December 2012
- 年：2012
- 卷：12
- 期：1
- 全文大小：511KB
- 参考文献：1. Devriese LA, Hommez J, Kilpper-Balz R, Schleifer KH: plus-plus">Streptococcus canis plus-plus">sp. nov.: a species of group G streptococci from animals. / Int J Syst Bacteriol 1986,plus-plus">36(3)plus-plus">:422-25. p://dx.doi.org/10.1099/00207713-36-3-422">CrossRef
2. Vandamme P, Pot B, Falsen E, Kersters K, Devriese LA: plus-plus">Taxonomic study of Lancefield streptococcal groups C, G, and L ( plus-plus">Streptococcus dysgalactiae plus-plus">) and proposal of S. plus-plus">dysgalactiae plus-plus">subsp. plus-plus">equisimilis plus-plus">subsp. nov. / Int J Syst Bacteriol 1996,plus-plus">46(3)plus-plus">:774-81. p://dx.doi.org/10.1099/00207713-46-3-774">CrossRef
3. Murase T, Morita T, Sunagawa Y, Sawada M, Shimada A, Sato K, Hikasa Y: plus-plus">Isolation of plus-plus">Streptococcus canis plus-plus">from a Japanese raccoon dog with fibrinous pleuropneumonia. / Vet Rec 2003,plus-plus">153(15)plus-plus">:471-72. p://dx.doi.org/10.1136/vr.153.15.471">CrossRef
4. Iglauer F, Kunstyr I, Morstedt R, Farouq H, Wullenweber M, Damsch S: plus-plus">Streptococcus canis plus-plus">arthritis in a cat breeding colony. / J Exp Anim Sci 1991,plus-plus">34(2)plus-plus">:59-5.
5. Pesavento PA, Bannasch MJ, Bachmann R, Byrne BA, Hurley KF: plus-plus">Fatal plus-plus">Streptococcus canis plus-plus">infections in intensively housed shelter cats. / Vet Pathol 2007,plus-plus">44(2)plus-plus">:218-21. p://dx.doi.org/10.1354/vp.44-2-218">CrossRef
6. Kruger EF, Byrne BA, Pesavento P, Hurley KF, Lindsay LL, Sykes JE: plus-plus">Relationship between clinical manifestations and pulsed-field gel profiles of plus-plus">Streptococcus canis plus-plus">isolates from dogs and cats. / Vet Microbiol 2010,plus-plus">146(1-)plus-plus">:167-71. p://dx.doi.org/10.1016/j.vetmic.2010.04.026">CrossRef
7. Matsuu A, Kanda T, Sugiyama A, Murase T, Hikasa Y: plus-plus">Mitral stenosis with bacterial myocarditis in a cat. / J Vet Med Sci 2007,plus-plus">69(11)plus-plus">:1171-174. p://dx.doi.org/10.1292/jvms.69.1171">CrossRef
8. Sura R, Hinckley LS, Risatti GR, Smyth JA: plus-plus">Fatal necrotising fasciitis and myositis in a cat associated with plus-plus">Streptococcus canis plus-plus">. / Vet Rec 2008,plus-plus">162(14)plus-plus">:450-53. p://dx.doi.org/10.1136/vr.162.14.450">CrossRef
9. DeWinter LM, Prescott JF: plus-plus">Relatedness of plus-plus">Streptococcus canis plus-plus">from canine streptococcal toxic shock syndrome and necrotizing fasciitis. / Can J Vet Res 1999,plus-plus">63(2)plus-plus">:90-5.
10. Hassan AA, Akineden O, Usleber E: plus-plus">Identification of plus-plus">Streptococcus canis plus-plus">isolated from milk of dairy cows with subclinical mastitis. / J Clin Microbiol 2005,plus-plus">43(3)plus-plus">:1234-238. p://dx.doi.org/10.1128/JCM.43.3.1234-1238.2005">CrossRef
11. Chaffer M, Friedman S, Saran A, Younis A: plus-plus">An outbreak of plus-plus">Streptococcus canis plus-plus">mastitis in a dairy herd in Israel. / N Z Vet J 2005,plus-plus">53(4)plus-plus">:261-64. p://dx.doi.org/10.1080/00480169.2005.36557">CrossRef
12. Tikofsky LL, Zadoks RN: plus-plus">Cross-infection between cats and cows: origin and control of plus-plus">Streptococcus canis plus-plus">mastitis in a dairy herd. / J Dairy Sci 2005,plus-plus">88(8)plus-plus">:2707-713. p://dx.doi.org/10.3168/jds.S0022-0302(05)72949-0">CrossRef
13. Galperine T, Cazorla C, Blanchard E, Boineau F, Ragnaud JM, Neau D: plus-plus">Streptococcus canis plus-plus">infections in humans: retrospective study of 54 patients. / J Infect 2007,plus-plus">55(1)plus-plus">:23-6. p://dx.doi.org/10.1016/j.jinf.2006.12.013">CrossRef
14. Lam MM, Clarridge JE 3rd, Young EJ, Mizuki S: plus-plus">The other group G plus-plus">Streptococcus plus-plus">: increased detection of plus-plus">Streptococcus canis plus-plus">ulcer infections in dog owners. / J Clin Microbiol 2007,plus-plus">45(7)plus-plus">:2327-329. p://dx.doi.org/10.1128/JCM.01765-06">CrossRef
15. Whatmore AM, Engler KH, Gudmundsdottir G, Efstratiou A: plus-plus">Identification of isolates of plus-plus">Streptococcus canis plus-plus">infecting humans. / J Clin Microbiol 2001,plus-plus">39(11)plus-plus">:4196-199. p://dx.doi.org/10.1128/JCM.39.1.4196-4199.2001">CrossRef
16. Bert F, Lambert-Zechovsky N: plus-plus">Septicemia caused by plus-plus">Streptococcus canis plus-plus">in a human. / J Clin Microbiol 1997,plus-plus">35(3)plus-plus">:777-79.
17. Lefebure T, Richards VP, Lang P, Pavinski-Bitar P, Stanhope MJ: plus-plus">Gene repertoire evolution of plus-plus">Streptococcus pyogenes plus-plus">inferred from phylogenomic analysis with plus-plus">Streptococcus canis plus-plus">and plus-plus">Streptococcus dysgalactiae plus-plus">. / PLoS One 2012,plus-plus">7(5)plus-plus">:e37607. p://dx.doi.org/10.1371/journal.pone.0037607">CrossRef
18. Jensen A, Kilian M: plus-plus">Delineation of plus-plus">Streptococcus dysgalactiae plus-plus">, its subspecies, and its clinical and phylogenetic relationship to plus-plus">Streptococcus pyogenes plus-plus">. / J Clin Microbiol 2012,plus-plus">50(1)plus-plus">:113-26. p://dx.doi.org/10.1128/JCM.05900-11">CrossRef
19. Shinozaki-Kuwahara N, Takada K, Hirasawa M: plus-plus">Streptococcus ursoris plus-plus">sp. nov., isolated from the oral cavities of bears. / Int J Syst Evol Microbiol 2011,plus-plus">61(Pt 1)plus-plus">:40-4. p://dx.doi.org/10.1099/ijs.0.019638-0">CrossRef
20. Tapp J, Thollesson M, Herrmann B: plus-plus">Phylogenetic relationships and genotyping of the genus plus-plus">Streptococcus plus-plus">by sequence determination of the RNase P RNA gene, rnpB. / Int J Syst Evol Microbiol 2003,plus-plus">53(Pt 6)plus-plus">:1861-871. p://dx.doi.org/10.1099/ijs.0.02639-0">CrossRef
21. Suzuki H, Lefebure T, Hubisz MJ, Pavinski Bitar P, Lang P, Siepel A, Stanhope MJ: plus-plus">Comparative genomic analysis of the plus-plus">Streptococcus dysgalactiae plus-plus">species group: gene content, molecular adaptation, and promoter evolution. / Genome Biol Evol 2011, plus-plus">3:168-85. p://dx.doi.org/10.1093/gbe/evr006">CrossRef
22. Broyles LN, Van Beneden C, Beall B, Facklam R, Shewmaker PL, Malpiedi P, Daily P, Reingold A, Farley MM: plus-plus">Population-based study of invasive disease due to beta-hemolytic streptococci of groups other than A and B. / Clin Infect Dis 2009,plus-plus">48(6)plus-plus">:706-12. p://dx.doi.org/10.1086/597035">CrossRef
23. DeWinter LM, Low DE, Prescott JF: plus-plus">Virulence of plus-plus">Streptococcus plus-plus">canis from canine streptococcal toxic shock syndrome and necrotizing fasciitis. / Vet Microbiol 1999,plus-plus">70(1-)plus-plus">:95-10. p://dx.doi.org/10.1016/S0378-1135(99)00128-5">CrossRef
24. Kanaya S, Yamada Y, Kudo Y, Ikemura T: plus-plus">Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of plus-plus">Bacillus subtilis plus-plus">tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. / Gene 1999,plus-plus">238(1)plus-plus">:143-55. p://dx.doi.org/10.1016/S0378-1119(99)00225-5">CrossRef
25. Sharp PM, Bailes E, Grocock RJ, Peden JF, Sockett RE: plus-plus">Variation in the strength of selected codon usage bias among bacteria. / Nucleic Acids Res 2005,plus-plus">33(4)plus-plus">:1141-153. p://dx.doi.org/10.1093/nar/gki242">CrossRef
26. Stothard P, Wishart DS: plus-plus">Circular genome visualization and exploration using CGView. / Bioinformatics 2005,plus-plus">21(4)plus-plus">:537-39. p://dx.doi.org/10.1093/bioinformatics/bti054">CrossRef
27. Bhakdi S, Tranum-Jensen J, Sziegoleit A: plus-plus">Mechanism of membrane damage by streptolysin-O. / Infect Immun 1985,plus-plus">47(1)plus-plus">:52-0.
28. Lang SH, Palmer M: plus-plus">Characterization of plus-plus">Streptococcus agalactiae plus-plus">CAMP factor as a pore-forming toxin. / J Biol Chem 2003,plus-plus">278(40)plus-plus">:38167-8173. p://dx.doi.org/10.1074/jbc.M303544200">CrossRef
29. Bisno AL, Brito MO, Collins CM: plus-plus">Molecular basis of group A streptococcal virulence. / Lancet Infect Dis 2003,plus-plus">3(4)plus-plus">:191-00. p://dx.doi.org/10.1016/S1473-3099(03)00576-0">CrossRef
30. Panchaud A, Guy L, Collyn F, Haenni M, Nakata M, Podbielski A, Moreillon P, Roten CA: plus-plus">M-protein and other intrinsic virulence factors of plus-plus">Streptococcus pyogenes plus-plus">are encoded on an ancient pathogenicity island. / BMC Genomics 2009, plus-plus">10:198. p://dx.doi.org/10.1186/1471-2164-10-198">CrossRef
31. Yang J, Liu Y, Xu J, Li B: plus-plus">Characterization of a new protective antigen of plus-plus">Streptococcus canis plus-plus">. / Vet Res Commun 2010,plus-plus">34(5)plus-plus">:413-21. p://dx.doi.org/10.1007/s11259-010-9414-1">CrossRef
32. Nizet V, Beall B, Bast DJ, Datta V, Kilburn L, Low DE, De Azavedo JC: plus-plus">Genetic locus for streptolysin S production by group A plus-plus">Streptococcus plus-plus">. / Infect Immun 2000,plus-plus">68(7)plus-plus">:4245-254. p://dx.doi.org/10.1128/IAI.68.7.4245-4254.2000">CrossRef
33. Todd E: plus-plus">The differentiation of two distinct serologic varieties of streptolysin, streptolysin O and streptolysin S. / J Pathol Bacteriol 1938, plus-plus">47:423-45. p://dx.doi.org/10.1002/path.1700470307">CrossRef
34. Humar D, Datta V, Bast DJ, Beall B, De Azavedo JC, Nizet V: plus-plus">Streptolysin S and necrotising infections produced by group G plus-plus">Streptococcus plus-plus">. / Lancet 2002,plus-plus">359(9301)plus-plus">:124-29. p://dx.doi.org/10.1016/S0140-6736(02)07371-3">CrossRef
35. Fuller JD, Camus AC, Duncan CL, Nizet V, Bast DJ, Thune RL, Low DE, De Azavedo JC: plus-plus">Identification of a streptolysin S-associated gene cluster and its role in the pathogenesis of plus-plus">Streptococcus iniae plus-plus">disease. / Infect Immun 2002,plus-plus">70(10)plus-plus">:5730-739. p://dx.doi.org/10.1128/IAI.70.10.5730-5739.2002">CrossRef
36. Molloy EM, Cotter PD, Hill C, Mitchell DA, Ross RP: plus-plus">Streptolysin S-like virulence factors: the continuing sagA. / Nat Rev Microbiol 2011,plus-plus">9(9)plus-plus">:670-81. p://dx.doi.org/10.1038/nrmicro2624">CrossRef
37. Koh TH, Sng LH, Yuen SM, Thomas CK, Tan PL, Tan SH, Wong NS: plus-plus">Streptococcal cellulitis following preparation of fresh raw seafood. / Zoonoses Public Health 2009,plus-plus">56(4)plus-plus">:206-08. p://dx.doi.org/10.1111/j.1863-2378.2008.01213.x">CrossRef
38. Sun JR, Yan JC, Yeh CY, Lee SY, Lu JJ: plus-plus">Invasive infection with plus-plus">Streptococcus iniae plus-plus">in Taiwan. / J Med Microbiol 2007,plus-plus">56(Pt 9)plus-plus">:1246-249. p://dx.doi.org/10.1099/jmm.0.47180-0">CrossRef
39. Facklam R, Elliott J, Shewmaker L, Reingold A: plus-plus">Identification and characterization of sporadic isolates of plus-plus">Streptococcus iniae plus-plus">isolated from humans. / J Clin Microbiol 2005,plus-plus">43(2)plus-plus">:933-37. p://dx.doi.org/10.1128/JCM.43.2.933-937.2005">CrossRef
40. Bekal S, Gaudreau C, Laurence RA, Simoneau E, Raynal L: plus-plus">Streptococcus pseudoporcinus plus-plus">sp. nov., a novel species isolated from the genitourinary tract of women. / J Clin Microbiol 2006,plus-plus">44(7)plus-plus">:2584-586. p://dx.doi.org/10.1128/JCM.02707-05">CrossRef
41. Weinstein MR, Litt M, Kertesz DA, Wyper P, Rose D, Coulter M, McGeer A, Facklam R, Ostach C, Willey BM, / et al.: plus-plus">Invasive infections due to a fish pathogen, plus-plus">Streptococcus iniae. S. iniae plus-plus">Study Group. / N Engl J Med 1997,plus-plus">337(9)plus-plus">:589-94. p://dx.doi.org/10.1056/NEJM199708283370902">CrossRef
42. Kawamura Y, Hou XG, Sultana F, Miura H, Ezaki T: plus-plus">Determination of 16S rRNA sequences of plus-plus">Streptococcus mitis plus-plus">and plus-plus">Streptococcus gordonii plus-plus">and phylogenetic relationships among members of the genus plus-plus">Streptococcus plus-plus">. / Int J Syst Bacteriol 1995,plus-plus">45(2)plus-plus">:406-08. p://dx.doi.org/10.1099/00207713-45-2-406">CrossRef
43. Jedrzejas MJ: plus-plus">Pneumococcal virulence factors: structure and function. / Microbiol Mol Biol Rev 2001,plus-plus">65(2)plus-plus">:187-07. first page, table of contents p://dx.doi.org/10.1128/MMBR.65.2.187-207.2001">CrossRef
44. Harvill ET, Preston A, Cotter PA, Allen AG, Maskell DJ, Miller JF: plus-plus">Multiple roles for plus-plus">Bordetella plus-plus">lipopolysaccharide molecules during respiratory tract infection. / Infect Immun 2000,plus-plus">68(12)plus-plus">:6720-728. p://dx.doi.org/10.1128/IAI.68.12.6720-6728.2000">CrossRef
45. Glaser P, Rusniok C, Buchrieser C, Chevalier F, Frangeul L, Msadek T, Zouine M, Couve E, Lalioui L, Poyart C, / et al.: plus-plus">Genome sequence of plus-plus">Streptococcus agalactiae plus-plus">, a pathogen causing invasive neonatal disease. / Mol Microbiol 2002,plus-plus">45(6)plus-plus">:1499-513. p://dx.doi.org/10.1046/j.1365-2958.2002.03126.x">CrossRef
46. Chastanet A, Prudhomme M, Claverys JP, Msadek T: plus-plus">Regulation of plus-plus">Streptococcus pneumoniae plus-plus">clp genes and their role in competence development and stress survival. / J Bacteriol 2001,plus-plus">183(24)plus-plus">:7295-307. p://dx.doi.org/10.1128/JB.183.24.7295-7307.2001">CrossRef
47. Blum G, Ott M, Lischewski A, Ritter A, Imrich H, Tschape H, Hacker J: plus-plus">Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an plus-plus">Escherichia coli plus-plus">wild-type pathogen. / Infect Immun 1994,plus-plus">62(2)plus-plus">:606-14.
48. Dobrindt U, Blum-Oehler G, Nagy G, Schneider G, Johann A, Gottschalk G, Hacker J: plus-plus">Genetic structure and distribution of four pathogenicity islands (PAI I(536) to PAI IV(536)) of uropathogenic plus-plus">Escherichia coli plus-plus">strain 536. / Infect Immun 2002,plus-plus">70(11)plus-plus">:6365-372. p://dx.doi.org/10.1128/IAI.70.11.6365-6372.2002">CrossRef
49. Sampath J, Vijayakumar MN: plus-plus">Identification of a DNA cytosine methyltransferase gene in conjugative transposon Tn5252. / Plasmid 1998,plus-plus">39(1)plus-plus">:63-6. p://dx.doi.org/10.1006/plas.1997.1316">CrossRef
50. Saunders J, Saunders V: plus-plus">Bacterial transformation with plasmid DNA. In / Methods in Microbiology Volume 21. Edited by: Grinsted J, Bennett P. London: Academic Press; 1988.
51. Sumby P, Barbian KD, Gardner DJ, Whitney AR, Welty DM, Long RD, Bailey JR, Parnell MJ, Hoe NP, Adams GG, / et al.: plus-plus">Extracellular deoxyribonuclease made by group A plus-plus">Streptococcus plus-plus">assists pathogenesis by enhancing evasion of the innate immune response. / Proc Natl Acad Sci U S A 2005,plus-plus">102(5)plus-plus">:1679-684. p://dx.doi.org/10.1073/pnas.0406641102">CrossRef
52. Richards VP, Lang P, Bitar PD, Lefebure T, Schukken YH, Zadoks RN, Stanhope MJ: plus-plus">Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted plus-plus">Streptococcus agalactiae plus-plus">. / Infect Genet Evol 2011,plus-plus">11(6)plus-plus">:1263-275. p://dx.doi.org/10.1016/j.meegid.2011.04.019">CrossRef
53. S?rensen UB, Poulsen K, Ghezzo C, Margarit I, Kilian M: plus-plus">Emergence and Global Dissemination of Host-Specific plus-plus">Streptococcus agalactiae plus-plus">Clones. / MBio 2010.,plus-plus">1(3)plus-plus">:
54. Brochet M, Couve E, Zouine M, Vallaeys T, Rusniok C, Lamy MC, Buchrieser C, Trieu-Cuot P, Kunst F, Poyart C, / et al.: plus-plus">Genomic diversity and evolution within the species plus-plus">Streptococcus agalactiae plus-plus">. / Microbes Infect 2006,plus-plus">8(5)plus-plus">:1227-243. p://dx.doi.org/10.1016/j.micinf.2005.11.010">CrossRef
55. Bisharat N, Crook DW, Leigh J, Harding RM, Ward PN, Coffey TJ, Maiden MC, Peto T, Jones N: plus-plus">Hyperinvasive neonatal group B plus-plus">Streptococcus plus-plus">has arisen from a bovine ancestor. / J Clin Microbiol 2004,plus-plus">42(5)plus-plus">:2161-167. p://dx.doi.org/10.1128/JCM.42.5.2161-2167.2004">CrossRef
56. Canchaya C, Proux C, Fournous G, Bruttin A, Brussow H: plus-plus">Prophage genomics. / Microbiol Mol Biol Rev 2003,plus-plus">67(2)plus-plus">:238-76. p://dx.doi.org/10.1128/MMBR.67.2.238-276.2003">CrossRef
57. Lucchini S, Desiere F, Brussow H: plus-plus">Similarly organized lysogeny modules in temperate Siphoviridae from low GC content gram-positive bacteria. / Virology 1999,plus-plus">263(2)plus-plus">:427-35. p://dx.doi.org/10.1006/viro.1999.9959">CrossRef
58. Li J, Kasper DL, Ausubel FM, Rosner B, Michel JL: plus-plus">Inactivation of the alpha C protein antigen gene, bca, by a novel shuttle/suicide vector results in attenuation of virulence and immunity in group B plus-plus">Streptococcus plus-plus">. / Proc Natl Acad Sci U S A 1997,plus-plus">94(24)plus-plus">:13251-3256. p://dx.doi.org/10.1073/pnas.94.24.13251">CrossRef
59. Peltroche-Llacsahuanga H, Frye B, Haase G: plus-plus">Isolation of plus-plus">Streptococcus urinalis plus-plus">from a human blood culture. / J Med Microbiol 2012,plus-plus">61(Pt 5)plus-plus">:740-42. p://dx.doi.org/10.1099/jmm.0.039792-0">CrossRef
60. Collins MD, Hutson RA, Falsen E, Nikolaitchouk N, LaClaire L, Facklam RR: plus-plus">An unusual plus-plus">Streptococcus plus-plus">from human urine, plus-plus">Streptococcus urinalis plus-plus">sp. nov. / Int J Syst Evol Microbiol 2000, plus-plus">50 Pt 3:1173-178. p://dx.doi.org/10.1099/00207713-50-3-1173">CrossRef
61. Rabel C, Grahn AM, Lurz R, Lanka E: plus-plus">The VirB4 family of proposed traffic nucleoside triphosphatases: common motifs in plasmid RP4 TrbE are essential for conjugation and phage adsorption. / J Bacteriol 2003,plus-plus">185(3)plus-plus">:1045-058. p://dx.doi.org/10.1128/JB.185.3.1045-1058.2003">CrossRef
62. Haenni M, Saras E, Bertin S, Leblond P, Madec JY, Payot S: plus-plus">Diversity and mobility of integrative and conjugative elements in bovine isolates of plus-plus">Streptococcus agalactiae,S. dysgalactiae plus-plus"> subsp. plus-plus">dysgalactiae plus-plus">, and plus-plus">S. uberis plus-plus">. / Appl Environ Microbiol 2010,plus-plus">76(24)plus-plus">:7957-965. p://dx.doi.org/10.1128/AEM.00805-10">CrossRef
63. Paoletti C, Foglia G, Princivalli MS, Magi G, Guaglianone E, Donelli G, Pruzzo C, Biavasco F, Facinelli B: plus-plus">Co-transfer of vanA and aggregation substance genes from plus-plus">Enterococcus faecalis plus-plus">isolates in intra- and interspecies matings. / J Antimicrob Chemother 2007,plus-plus">59(5)plus-plus">:1005-009. p://dx.doi.org/10.1093/jac/dkm057">CrossRef
64. Ferretti JJ, McShan WM, Ajdic D, Savic DJ, Savic G, Lyon K, Primeaux C, Sezate S, Suvorov AN, Kenton S, / et al.: plus-plus">Complete genome sequence of an M1 strain of plus-plus">Streptococcus pyogenes plus-plus">. / Proc Natl Acad Sci U S A 2001,plus-plus">98(8)plus-plus">:4658-663. p://dx.doi.org/10.1073/pnas.071559398">CrossRef
65. Pryor SM, Cursons RT, Williamson JH, Lacy-Hulbert SJ: plus-plus">Experimentally induced intramammary infection with multiple strains of plus-plus">Streptococcus uberis plus-plus">. / J Dairy Sci 2009,plus-plus">92(11)plus-plus">:5467-475. p://dx.doi.org/10.3168/jds.2009-2223">CrossRef
66. Zadoks RN, Schukken YH: plus-plus">Use of molecular epidemiology in veterinary practice. / Vet Clin North Am Food Anim Pract 2006,plus-plus">22(1)plus-plus">:229-61. p://dx.doi.org/10.1016/j.cvfa.2005.11.005">CrossRef
67. Excoffier L, Smouse PE, Quattro JM: plus-plus">Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. / Genetics 1992, plus-plus">131:479-91.
68. Didelot X, Falush D: plus-plus">Inference of bacterial microevolution using multilocus sequence data. / Genetics 2007,plus-plus">175(3)plus-plus">:1251-266. p://dx.doi.org/10.1534/genetics.106.063305">CrossRef
69. Guttman DS, Dykhuizen DE: plus-plus">Clonal divergence in plus-plus">Escherichia coli plus-plus">as a result of recombination, not mutation. / Science 1994,plus-plus">266(5189)plus-plus">:1380-383. p://dx.doi.org/10.1126/science.7973728">CrossRef
70. Vos M, Didelot X: plus-plus">A comparison of homologous recombination rates in bacteria and archaea. / ISME J 2009,plus-plus">3(2)plus-plus">:199-08. p://dx.doi.org/10.1038/ismej.2008.93">CrossRef
71. Lang P, Lefebure T, Wang W, Zadoks RN, Schukken Y, Stanhope MJ: plus-plus">Gene content differences across strains of plus-plus">Streptococcus uberis plus-plus">identified using oligonucleotide microarray comparative genomic hybridization. / Infect Genet Evol 2009,plus-plus">9(2)plus-plus">:179-88. p://dx.doi.org/10.1016/j.meegid.2008.10.015">CrossRef
72. Fraser C, Hanage WP, Spratt BG: plus-plus">Neutral microepidemic evolution of bacterial pathogens. / Proc Natl Acad Sci U S A 2005,plus-plus">102(6)plus-plus">:1968-973. p://dx.doi.org/10.1073/pnas.0406993102">CrossRef
73. Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG: plus-plus">eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. / J Bacteriol 2004,plus-plus">186(5)plus-plus">:1518-530. p://dx.doi.org/10.1128/JB.186.5.1518-1530.2004">CrossRef
74. Pritchard JK, Stephens M, Donnelly P: plus-plus">Inference of population structure using multilocus genotype data. / Genetics 2000,plus-plus">155(2)plus-plus">:945-59.
75. Falush D, Stephens M, Pritchard JK: plus-plus">Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. / Genetics 2003,plus-plus">164(4)plus-plus">:1567-587.
76. Evanno G, Regnaut S, Goudet J: plus-plus">Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. / Mol Ecol 2005,plus-plus">14(8)plus-plus">:2611-620. p://dx.doi.org/10.1111/j.1365-294X.2005.02553.x">CrossRef
77. Persson Y, Nyman AK, Gronlund-Andersson U: plus-plus">Etiology and antimicrobial susceptibility of udder pathogens from cases of subclinical mastitis in dairy cows in Sweden. / Acta Vet Scand 2011, plus-plus">53:36. p://dx.doi.org/10.1186/1751-0147-53-36">CrossRef
78. Piepers S, De Meulemeester L, de Kruif A, Opsomer G, Barkema HW, De Vliegher S: plus-plus">Prevalence and distribution of mastitis pathogens in subclinically infected dairy cows in Flanders, Belgium. / J Dairy Res 2007,plus-plus">74(4)plus-plus">:478-83. p://dx.doi.org/10.1017/S0022029907002841">CrossRef
79. Sampimon O, Barkema HW, Berends I, Sol J, Lam T: plus-plus">Prevalence of intramammary infection in Dutch dairy herds. / J Dairy Res 2009,plus-plus">76(2)plus-plus">:129-36. p://dx.doi.org/10.1017/S0022029908003762">CrossRef
80. Petrovski KR, Heuer C, Parkinson TJ, Williamson NB: plus-plus">The incidence and aetiology of clinical bovine mastitis on 14 farms in Northland, New Zealand. / N Z Vet J 2009,plus-plus">57(2)plus-plus">:109-15. p://dx.doi.org/10.1080/00480169.2009.36887">CrossRef
81. Guelat-Brechbuehl M, Thomann A, Albini S, Moret-Stalder S, Reist M, Bodmer M, Michel A, Niederberger MD, Kaufmann T: plus-plus">Cross-sectional study of Streptococcus species in quarter milk samples of dairy cows in the canton of Bern, Switzerland. / Vet Rec 2010,plus-plus">167(6)plus-plus">:211-15. p://dx.doi.org/10.1136/vr.167.6.211">CrossRef
82. Bengtsson B, Unnerstad HE, Ekman T, Artursson K, Nilsson-Ost M, Waller KP: plus-plus">Antimicrobial susceptibility of udder pathogens from cases of acute clinical mastitis in dairy cows. / Vet Microbiol 2009,plus-plus">136(1-)plus-plus">:142-49. p://dx.doi.org/10.1016/j.vetmic.2008.10.024">CrossRef
83. Avise JC: / Phylogeography. The history and formation of species. Cambridge, MA: Harvard University Press; 2000.
84. Templeton AR: / Population genetics and microevolutionary theory. New Jersey: Wiley; 2006. p://dx.doi.org/10.1002/0470047356">CrossRef
85. Delorme C, Poyart C, Ehrlich SD, Renault P: plus-plus">Extent of horizontal gene transfer in evolution of Streptococci of the salivarius group. / J Bacteriol 2007,plus-plus">189(4)plus-plus">:1330-341. p://dx.doi.org/10.1128/JB.01058-06">CrossRef
86. Davies MR, Tran TN, McMillan DJ, Gardiner DL, Currie BJ, Sriprakash KS: plus-plus">Inter-species genetic movement may blur the epidemiology of streptococcal diseases in endemic regions. / Microbes Infect 2005,plus-plus">7(9-0)plus-plus">:1128-138. p://dx.doi.org/10.1016/j.micinf.2005.03.018">CrossRef
87. Zerbino DR, Birney E: plus-plus">Velvet: algorithms for de novo short read assembly using de Bruijn graphs. / Genome Res 2008,plus-plus">18(5)plus-plus">:821-29. p://dx.doi.org/10.1101/gr.074492.107">CrossRef
88. Gotz S, Garcia-Gomez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talon M, Dopazo J, Conesa A: plus-plus">High-throughput functional annotation and data mining with the Blast2GO suite. / Nucleic Acids Res 2008,plus-plus">36(10)plus-plus">:3420-435. p://dx.doi.org/10.1093/nar/gkn176">CrossRef
89. van Dongen S: / Graph clustering by flow simulation. 2000. [ / University of Utrecht]
90. Brohee S, van Helden J: plus-plus">Evaluation of clustering algorithms for protein-protein interaction networks. / BMC Bioinformatics 2006, plus-plus">7:488. p://dx.doi.org/10.1186/1471-2105-7-488">CrossRef
91. Enright MC, Spratt BG: plus-plus">A multilocus sequence typing scheme for plus-plus">Streptococcus pneumoniae plus-plus">: identification of clones associated with serious invasive disease. / Microbiology 1998,plus-plus">144(Pt 11)plus-plus">:3049-060. p://dx.doi.org/10.1099/00221287-144-11-3049">CrossRef
92. Enright MC, Spratt BG, Kalia A, Cross JH, Bessen DE: plus-plus">Multilocus sequence typing of plus-plus">Streptococcus pyogenes plus-plus">and the relationships between emm type and clone. / Infect Immun 2001,plus-plus">69(4)plus-plus">:2416-427. p://dx.doi.org/10.1128/IAI.69.4.2416-2427.2001">CrossRef
93. Goh SH, Santucci Z, Kloos WE, Faltyn M, George CG, Driedger D, Hemmingsen SM: plus-plus">Identification of plus-plus">Staphylococcus plus-plus">species and subspecies by the chaperonin 60 gene identification method and reverse checkerboard hybridization. / J Clin Microbiol 1997,plus-plus">35(12)plus-plus">:3116-121.
94. Ke D, Picard FJ, Martineau F, Menard C, Roy PH, Ouellette M, Bergeron MG: plus-plus">Development of a PCR assay for rapid detection of enterococci. / J Clin Microbiol 1999,plus-plus">37(11)plus-plus">:3497-503.
95. Zadoks RN, Schukken YH, Wiedmann M: plus-plus">Multilocus sequence typing of plus-plus">Streptococcus uberis plus-plus">provides sensitive and epidemiologically relevant subtype information and reveals positive selection in the virulence gene pauA. / J Clin Microbiol 2005,plus-plus">43(5)plus-plus">:2407-417. p://dx.doi.org/10.1128/JCM.43.5.2407-2417.2005">CrossRef
96. Katoh K, Misawa K, Kuma K, Miyata T: plus-plus">MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. / Nucleic Acids Res 2002,plus-plus">30(14)plus-plus">:3059-066. p://dx.doi.org/10.1093/nar/gkf436">CrossRef
97. Rozas J, Sánchez-DelBarrio J, Messegyer X, Rozas R: plus-plus">DNASP, DNA polymorphism analyses by the coalescent and other methods. / Bioinformatics 2003, plus-plus">19:2496-497. p://dx.doi.org/10.1093/bioinformatics/btg359">CrossRef
98. Excoffier L, Laval G, Schneider S: plus-plus">Arlequin (version 3.0): an integrated software package for population genetics data analysis. / Evol Bioinform Online 2005, plus-plus">1:47-0. - 作者单位：Vincent P Richards (1)
Ruth N Zadoks (2) (4)
Paulina D Pavinski Bitar (1)
Tristan Lefébure (1) (5)
Ping Lang (6)
Brenda Werner (2)
Linda Tikofsky (2) (7)
Paolo Moroni (2) (3)
Michael J Stanhope (1)
1. Department of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA
2. Quality Milk Production Services, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA
4. Moredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Scotland, UK
5. Centre National de la Recherche Scientifique, Ecologie des Hydrosystèmes Naturels et Anthropisés, Université de Lyon, Université Lyon 1, Villeurbanne, France
6. Department of Plant Pathology & Plant-Microbe Biology, Cornell University, Ithaca, NY, 14853, USA
7. 4055 McIntyre Road, Trumansburg, NY, 14886, USA
3. Department of Health, Animal Science and Food Safety, Università degli Studi di Milano, Via Celoria 10, 20133, Milan, Italy - ISSN：1471-2180
文摘
Background Streptococcus canis is an important opportunistic pathogen of dogs and cats that can also infect a wide range of additional mammals including cows where it can cause mastitis. It is also an emerging human pathogen. Results Here we provide characterization of the first genome sequence for this species, strain FSL S3-227 (milk isolate from a cow with an intra-mammary infection). A diverse array of putative virulence factors was encoded by the S. canis FSL S3-227 genome. Approximately 75% of these gene sequences were homologous to known Streptococcal virulence factors involved in invasion, evasion, and colonization. Present in the genome are multiple potentially mobile genetic elements (MGEs) [plasmid, phage, integrative conjugative element (ICE)] and comparison to other species provided convincing evidence for lateral gene transfer (LGT) between S. canis and two additional bovine mastitis causing pathogens (Streptococcus agalactiae, and Streptococcus dysgalactiae subsp. dysgalactiae), with this transfer possibly contributing to host adaptation. Population structure among isolates obtained from Europe and USA [bovine--6, canine--6, and feline--] was explored. Ribotyping of all isolates and multi locus sequence typing (MLST) of a subset of the isolates (n--5) detected significant differentiation between bovine and canine isolates (Fisher exact test: P--.0000 [ribotypes], P--.0030 [sequence types]), suggesting possible host adaptation of some genotypes. Concurrently, the ancestral clonal complex (54% of isolates) occurred in many tissue types, all hosts, and all geographic locations suggesting the possibility of a wide and diverse niche. Conclusion This study provides evidence highlighting the importance of LGT in the evolution of the bacteria S. canis, specifically, its possible role in host adaptation and acquisition of virulence factors. Furthermore, recent LGT detected between S. canis and human bacteria (Streptococcus urinalis) is cause for concern, as it highlights the possibility for continued acquisition of human virulence factors for this emerging zoonotic pathogen.