Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

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• 作者：Roy G. Danzmann ; Andrea L. Kocmarek ; Joseph D. Norman ; Caird E. Rexroad III…
• 关键词：RNAseq ; White muscle ; Sarcomere assembly ; Exercise physiology ; Metabolic profile
• 刊名：BMC Genomics
• 出版年：2016
• 出版时间：December 2016
• 年：2016
• 卷：17
• 期：1
• 全文大小：1,759 KB
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• 作者单位：Roy G. Danzmann (1)
  Andrea L. Kocmarek (1)
  Joseph D. Norman (1)
  Caird E. Rexroad III (2)
  Yniv Palti (2)
  
  1. Department of Integrative Biology, University of Guelph, 50 Stone Road East, Guelph, ON, N1G 2W1, Canada
  2. National Center for Cool and Cold Water Aquaculture, ARS-USDA, 11861 Leetown Road, Kearneysville, WV, 25430, USA
  
• 刊物主题：Life Sciences, general; Microarrays; Proteomics; Animal Genetics and Genomics; Microbial Genetics and Genomics; Plant Genetics & Genomics;
• 出版者：BioMed Central
• ISSN：1471-2164

文摘

Background Circannual rhythms in vertebrates can influence a wide variety of physiological processes. Some notable examples include annual reproductive cycles and for poikilotherms, seasonal changes modulating growth. Increasing water temperature elevates growth rates in fishes, but increases in photoperiod regime can have similar influences even at constant temperature. Therefore, in order to understand the dynamics of growth in fish it is important to consider the background influence of photoperiod regime on gene expression differences. This study examined the influence of a declining photoperiod regime (winter solstice) compared to an increasing photoperiod regime (spring equinox) on white muscle transcriptome profiles in fast and slow-growing rainbow trout from a commercial aquaculture strain.