Revisiting a Classic Study of the Molecular Clock
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  • 作者:Lauren M. Robinson ; Joseph R. Boland ; John M. Braverman
  • 关键词:Molecular clock ; Constant rate of evolution ; Protein evolution ; Dickerson’s graph
  • 刊名:Journal of Molecular Evolution
  • 出版年:2016
  • 出版时间:March 2016
  • 年:2016
  • 卷:82
  • 期:2-3
  • 页码:110-116
  • 全文大小:536 KB
  • 参考文献:Aquadro CF, Losos JB (2013) Molecular Evolution. In: Baum DA et al (eds) The Princeton guide to evolution. Princeton University Press, Princeton, pp 367–373
    Baum DA, Futuyma DJ, Hoekstra HE et al (2013) The Princeton guide to evolution. Princeton University Press, Princeton
    Benton MJ, Donoghue PCJ (2007) Paleontological evidence to date the tree of life. Mol Biol Evol 24:26–53CrossRef PubMed
    Dickerson RE (1971) The structure of cytochrome c and the rates of molecular evolution. J Mol Evol 1:26–45CrossRef PubMed
    Dickerson RE, Geis I (1969) The structure and action of proteins. Harper & Row, New York
    Gaunt MW, Miles MA (2002) An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks. Mol Biol Evol 19:748–761CrossRef PubMed
    Hamilton MB (2009) Population genetics. Wiley-Blackwell, Hoboken
    Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Mentjies P, Drummond A (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28(12):1647–1649CrossRef PubMed PubMedCentral
    Kumar S (2005) Molecular clocks: four decades of evolution. Nat Rev Genet 6:654–662CrossRef PubMed
    Pevsner J (2009) Bioinformatics and functional genomics. Wiley-Blackwell, HobokenCrossRef
    Ruse M, Travis J (2009) Evolution: the first four billion years. Belknap, Cambridge
    Russell PJ (2003) Essential iGenetics. Benjamin Cummings, San Francisco
    R Core Team (2014) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. http://​www.​R-project.​org/​
    Sokal RR, Rohlf FJ (2012) Biometry: the principles and practices of statistics in biological research, 4th edn. W.H. Freeman and Company, New York
    Theodor JM (2004) Molecular clock divergence estimates and the fossil record of Cetartiodactyla. J Paleontol 78:39–44CrossRef
    Wang DY, Kumar S, Hedges SB (1999) Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi. Proc Biol Sci 266:163–171CrossRef PubMed PubMedCentral
    Young JZ (1962) The life of vertebrates, 2nd edn. Oxford University Press, Oxford
    Zuckerkandl E, Pauling LB (1962) Molecular disease, evolution, and genetic heterogeneity. In: Kasha M, Pullman B (eds) Horizons in biochemistry. Academic Press, New York, pp 189–225
    Zuckerkandl E, Pauling LB (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, Vogel HJ (eds) Evolving genes and proteins. Academic Press, New York, pp 97–166
  • 作者单位:Lauren M. Robinson (1)
    Joseph R. Boland (1)
    John M. Braverman (1)

    1. Department of Biology, Saint Joseph’s University, 5600 City Ave., Philadelphia, PA, 19131, USA
  • 刊物类别:Biomedical and Life Sciences
  • 刊物主题:Life Sciences
    Cell Biology
    Microbiology
    Plant Sciences
  • 出版者:Springer New York
  • ISSN:1432-1432
文摘
A constant rate of molecular evolution among homologous proteins and across lineages is known as the molecular clock. This concept has been useful for estimating divergence times. Here, we revisit a study by Richard Dickerson (J Mol Evol 1:26–45, 1971), wherein he provided striking visual evidence for a constant rate of amino acid changes among various evolutionary branch points. Dickerson’s study is commonly cited as support of the molecular clock and a figure from it is often reproduced in textbooks. Since its publication, however, there have been updates made to dates of common ancestors based on the fossil record that should be considered. Additionally, collecting the accession numbers and carefully outlining Dickerson’s methods serves as a resource to students of the molecular clock hypothesis.

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