Bacillus coreaensis sp. nov.: a xylan-hydrolyzing bacterium isolated from the soil of Jeju Island, Republic of Korea
详细信息    查看全文
  • 作者:Won-Jae Chi ; Young Sang Youn ; Jae-Seon Park ; Soon-Kwang Hong
  • 关键词:xylanase ; Bacillus coreaensis ; DSM25506 ; KCTC ; 13895
  • 刊名:Journal of Microbiology
  • 出版年:2015
  • 出版时间:July 2015
  • 年:2015
  • 卷:53
  • 期:7
  • 页码:448-453
  • 全文大小:243 KB
  • 参考文献:Baker G.C., Smith J.J., and Cowan D.A. 2003. Review and reanalysis of domain-specific 16S primers. J. Microbiol. Methods 55, 541鈥?55.PubMed View Article
    Chi W.J., Park D.Y., Chang Y.K., and Hong S.K. 2012. A novel alkaliphilic xylanase from the newly isolated mesophilic Bacillus sp. MX47: production, purification, and characterization. Appl. Biochem. Biotechnol. 168, 899鈥?09.PubMed View Article
    Chun J., Lee J.H., Jung Y.Y., Kim M.J., Kim S.I., Kim B.K., and Lim Y.W. 2007. ExTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J. Syst. Evol. Microbiol. 57, 2259鈥?261.PubMed View Article
    Claus D. and Berkeley C.W. 1986. Genus Bacillus Cohn 1872. vol. 2. pp. 1105鈥?139. In Sneath, P.H.A., Mair, N.S., Sharpe, M.E., and Holt, J.G. (eds.), Bergey鈥檚 Manual of Systematic Bacteriology. The Williams and Wilkins, Baltimore, USA.
    Cohn F. 1872. Untersuchungen 眉ber Bakterien. Beitrage zur Biologie der Pflanzen. 1, 127鈥?24.
    Collins T., Gerday C., and Feller G. 2005. Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiol. Rev. 29, 3鈥?3.PubMed View Article
    Euzeby J.P. 2013. Bacillus Cohn 1872, genus. In list of prokaryotic names with standing in nomenclature (http://鈥媤ww.鈥媌acterio.鈥媍ict.鈥媐r/鈥媌/鈥媌acillus.鈥媓tml ).
    Ezaki T., Hashimoto Y., and Yabuuchi E. 1989. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39, 224鈥?29.View Article
    Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95鈥?8.
    K盲mpher P. 2002. Whole-cell fatty acid analysis in the systematics of Bacillus and related genera. pp. 271鈥?99. In Berkeley, R., Heyndrickx, M., Logan, N., and De Vos, P. (eds.), Applications and Systematics of Bacillus and Relatives. Blackwell Science Ltd., USA.
    Kim H.J., Park C.S., Lee S., and Ahn T.Y. 2014. Bacillus daqingensis sp. nov. isolated from near poultry farm soil. J. Microbiol. 52, 554鈥?58.PubMed View Article
    Kimura M. 1983. The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge, UK.View Article
    Komagata K. and Suzuki K. 1987. Lipid and cell-wall analysis in bacterial systematic. Methods Microbiol. 19, 161鈥?07.View Article
    Logan N.A., Lebbe L., Verhelst A., Goris J., Forsyth G., Rodriguez-Diaz M., Heyndrickx M., and De Vos P. 2004. Bacillus shackletonii sp. nov., from volcanic soil on Candlemas Island, South Sandwich archipelago. Int. J. Syst. Evol. Microbiol. 54, 373鈥?76.PubMed View Article
    Mesbah M., Premachandran U., and Whitman W.B. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39, 159鈥?67.View Article
    Miller L. and Berger T. 1985. Bacterial identification by gas chromatography of whole cell fatty acids. Hewlett-Packard Application note pp. 228鈥?41. Hewlett-Packard Co., Avondale, Pa.
    Nagar S., Gupta V.K., Kumar D., Kumar L., and Kuhad R.C. 2010. Production and optimization of cellulase-free, alkali-stable xylanase by Bacillus pumilus SV-85S in submerged fermentation. J. Ind. Microbiol. Biotechnol. 37, 71鈥?3.PubMed View Article
    Saitou N. and Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406鈥?25.PubMed
    Sasser M. 1990. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Inc., Newark, DE, USA.
    Staneck J.L. and Roberts G.D. 1974. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl. Microbiol. 28, 226鈥?31.PubMed Central PubMed
    Thompson J.D., Higgins D.G., and Gibson T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673鈥?680.PubMed Central PubMed View Article
    Wayne L.G., Brenner D.J., Colwell R.R., Grimont P.A.D., Kandler O., Krichevsky M.I., Moore L.H., Moore W.E.C., Murray R.G.E., Stackebrandt E., et al. 1987. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37, 463鈥?64.View Article
    Wilson K. 1987. Preparation of genomic DNA from bacteria. pp. 2.4.1鈥?.4.5. In Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K. (eds.). Current Protocols in Molecular Biology, Green Publishing & Wiley Interscience, New York, USA.
    Yu Y., Li H.R., Zeng Y.X., and Bo C. 2011. Bacillus beringensis sp. nov., a psychrotolerant bacterium isolated from the Bering Sea. Antonie van Leeuwenhoek 99, 551鈥?57.PubMed View Article
    Zhang L., Wang Y., Dai J., Tang Y., Yang Q., Luo X., and Fang C.X. 2009. Bacillus korlensis sp. nov., a moderately halotolerant bacterium isolated from a sand soil sample in China. Int. J. Syst. Evol. Microbiol. 59, 1787鈥?792.PubMed View Article
  • 作者单位:Won-Jae Chi (2)
    Young Sang Youn (1)
    Jae-Seon Park (1)
    Soon-Kwang Hong (1)

    2. Biological and Genetic Resource Assessment Division, National Institute of Biological Resource, Incheon, 404-170, Republic of Korea
    1. Department of Biological Science and Bioinformatics, Myongji University, Yongin, 449-728, Republic of Korea
  • 刊物主题:Microbiology;
  • 出版者:Springer Netherlands
  • ISSN:1976-3794
文摘
A xylan-degrading bacterium, designated as MS5T strain, was isolated from soil collected from the Jeju Island, Republic of Korea. Strain MS5T was Gram-stain-positive, aerobic, and motile by polar flagellum. The major fatty acids identified in this bacterium were iso-C15:0 (32.3%), C16:0 (27.3%), and anteiso-C15:0 (10.2%). A similarity search based on the 16S rRNA gene sequence revealed that the strain belongs to the class Bacilli and shared the highest similarity with the type strains Bacillus beringensis BR035T (98.7%) and Bacillus korlensis ZLC-26T (98.6%) which form a coherent cluster in a neighbor-joining phylogenetic tree. The DNA G+C content of strain MS5T was 43.0 mol%. The major menaquinone was MK-7 and the diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. The DNADNA relatedness values between strain MS5T and two closely related species, B. beringensis BR035T and B. korlensis ZLC-26T, were less than 70%. DNA-DNA relatedness analysis and 16S rRNA sequence similarity, as well as phenotypic and chemotaxonomic characteristics suggest that the strain MS5T constitutes a novel Bacillus species, for which the name Bacillus coreaensis sp. nov. is proposed. The type strain is MS5T (=DSM25506T =KCTC13895T).

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700