Vicariance, dispersal, and hybridization in a naturally fragmented system: the afro-alpine endemics Carex monostachya and C. runssoroensis (Cyperaceae)
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  • 作者:Abel Gizaw ; Tigist Wondimu ; Tusiime Felly Mugizi ; Catherine Aloyce Masao…
  • 关键词:Afro ; alpine ; Carex ; Hybridization ; Long ; distance dispersal ; Vicariance
  • 刊名:Alpine Botany
  • 出版年:2016
  • 出版时间:April 2016
  • 年:2016
  • 卷:126
  • 期:1
  • 页码:59-71
  • 全文大小:1,386 KB
  • 参考文献:Arctander P, Johansen C, Coutellec-Vreto MA (1999) Phylogeography of three closely related African bovids (tribe Alcelaphini). Mol Biol Evol 16:1724–1739CrossRef PubMed
    Assefa A, Ehrich D, Taberlet P, Nemomissa S, Brochmann C (2007) Pleistocene colonization of afro-alpine ‘sky islands’ by the arctic-alpine Arabis alpina. Heredity 99:133–142CrossRef PubMed
    Bonin A, Bellemain E, Eidesen PB, Pompanon F, Brochmann C, Taberlet P (2004) How to track and assess genotyping errors in population genetics studies. Mol Ecol 13:3261–3273CrossRef PubMed
    Bonnefille R, Roeland JC, Guiot J (1990) Temperature and rainfall estimates of the past 40000 years in equatorial Africa. Nature 346:347–349CrossRef
    Brühl C (1997) Flightless insects: a test case for historical relationships of African mountains. J Biogeogr 24:233–250CrossRef
    Bryant D, Moulton V (2004) NeighborNet: an agglomerative algorithm for the construction of phylogenetic networks. Mol Biol Evol 21:255–265CrossRef PubMed
    Choler P, Erschbamer B, Tribsch A, Gielly L, Taberlet P (2003) Genetic introgression as a potential to widen a species’ niche: insights from the alpine Carex curvula. Proc Natl Acad Sci USA 101:171–176CrossRef PubMed PubMedCentral
    Chorowicz J (2005) The East African rift system. J Afr Earth Sci 43:379–410CrossRef
    Coetzee JA (1964) Evidence for a considerable depression of the vegetation belts during the upper Pleistocene on the East African mountains. Nature 204:564–566CrossRef
    Ehrich D (2006) AFLPdat: a collection of R functions for convenient handling of AFLP data. Mol Ecol Notes 6:603–604CrossRef
    Ehrich D (2007) Structure-sum v. 2007: a series of R functions for summarizing the outputs of the program structure ver. 2.2. (Unpublished, available from the author upon request)
    Ehrich D, Gaudeul M, Assefa A, Koch MA, Mummenhoff K, Nemomissa S, Brochmann C (2007) Genetic consequences of Pleistocene range shifts: contrast between the Arctic, the Alps and the East African mountains. Mol Ecol 16:2542–2559CrossRef PubMed
    Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620CrossRef PubMed
    Excoffier LLG, Schneider S (2005) ARLEQUIN version 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50PubMedCentral
    Falush D, Stephens M, Pritchard J (2007) Inference of population structure using multilocus genotype data: dominant markers and null allele. Mol Ecol Notes 7:574–578CrossRef PubMed PubMedCentral
    Flenley JR (1979) The Equatorial rain forest: a geological history. Butterworths, London
    Gaudeul M, Taberlet P, Till-Bottraud I (2000) Genetic diversity in an endangered alpine plant, Eryngium alpinum L. (Apiaceae), inferred from amplified fragment length polymorphism markers. Mol Ecol 9:1625–1637CrossRef PubMed
    Gehrke B (2011) Synopsis of Carex (Cyperaceae) from sub-Saharan Africa and Madagascar. Bot J Linn Soc 166:51–59CrossRef
    Gehrke B, Linder HP (2009) The scramble for Africa: pan-temperate elements on the African high mountains. Proc R Soc Lond, Ser B: Biol Sci 276:2657–2665CrossRef
    Gehrke B, Linder HP (2014) Species richness, endemism and species composition in the tropical Afroalpine flora. Alp Bot 124:165–177CrossRef
    Gizaw A, Kebede M, Nemomissa S, Ehrich D, Bekele B, Mirré V, Popp M, Brochmann C (2013) Phylogeography of the heathers Erica arborea and E. trimera in the afro-alpine ‘sky islands’ inferred from AFLPs and plastid DNA sequences. Flora 208:453–463CrossRef
    Gottelli D, Marino J, Sillero-Zubiri C, Funk SM (2004) The effect of the last glacial age on speciation and population genetic structure of the endangered Ethiopian wolf (Canis simensis). Mol Ecol 13:2275–2286CrossRef PubMed
    Haines RW, Lye KA (1983) The sedges and rushes of East Africa. East African Natural History Society, Nairobi
    Hedberg O (1957) Afroalpine vascular plants. A taxonomic revision. Symb Bot Ups 15:1–411
    Hedberg O (1964) Features of Afroalpine plant ecology. Almqvist and Wiksells, Uppsala
    Hedberg O (1965) Afroalpine flora elements. Webbia 19:519–529
    Hedberg O (1969) Evolution and speciation in a tropical high mountain flora. Bot J Linn Soc 1:135–148CrossRef
    Hedberg O (1986) Origin of the afroalpine flora. In: Vuilleumier F, Monastero M (eds) High altitude tropical biogeography. Oxford University Press, New York, pp 443–468
    Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23:254–267CrossRef PubMed
    Jacob M, Annys S, Frankl A, De Ridder M, Beeckman H, Guyassa E, Nyssen J (2015) Tree line dynamics in the tropical African highlands—identifying drivers and dynamics. J Veg Sci 26:9–20CrossRef
    Jakobsson M, Rosenberg NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23:1801–1806CrossRef PubMed
    Jiménez-Mejías P, Luceño M, Lye KA, Brochmann C, Gussarova G (2012) Genetically diverse but with surprisingly little geographical structure: the complex history of the widespread herb Carex nigra (Cyperaceae). J Biogeogr 39:2279–2291CrossRef
    Kebede M, Ehrich D, Taberlet P, Nemomissa S, Brochmann C (2007) Phylogeography and conservation genetics of a giant lobelia (Lobelia giberroa) in Ethiopian and Tropical East African mountains. Mol Ecol 16:1233–1243CrossRef PubMed
    Knox EB, Palmer JD (1995) Chloroplast DNA variation and the recent radiation of the giant senecios (Asteraceae) on the tall mountains of eastern Africa. Proc Natl Acad Sci USA 92:10349–10353CrossRef PubMed PubMedCentral
    Knox EB, Palmer JD (1998) Chloroplast DNA evidence on the origin and radiation of the giant Lobelias in Eastern Africa. Syst Bot 23:109–149CrossRef
    Koch MA, Kiefer C, Ehrich D, Vogel J, Brochmann C, Mummenhoff K (2006) Three times out of Asia Minor: the phylogeography of Arabis alpina L. (Brassicaceae). Mol Ecol 15:825–839CrossRef PubMed
    Korpelainen H, Virtanen V, H KK Väre (2010) Hybridization and introgression in Carex aquatilis and C. paleacea. Plant Syst Evol 287:141–151CrossRef
    Kosman E (2003) Nei’s gene diversity and the index of average differences are identical measures of diversity within populations. Plant Pathol 52:533–535CrossRef
    Kükenthal G (1909) Cyperaceae-Caricoideae. In: Engler A (ed) Das Pflanzenreich, vol. 4 (21). Wilhelm Engelmann, Leipzig, pp 1–824
    Linder HP (2014) The evolution of African plant diversity. Front Ecol Evol 2:1–14CrossRef
    Lye KA (1997) 212. Cyperaceae: 19. Carex. In: Edwards S, Demissew S, Hedberg I (eds) Flora of Ethiopia and Eritrea. Addis Ababa University, Addis Ababa, pp 391–511
    Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209–220PubMed
    Masao CA, Gizaw A, Piñeiro R, Tusiime FM, Wondimu T, Abdi AA, Popp M, Gussarova G, Lye KA, Munishi P, Nemomissa S, Brochmann C (2013) Phylogeographic history and taxonomy of some afro-alpine grasses assessed based on AFLPs and morphometry: deschampsia cespitosa, D. angusta and Koeleria capensis. Alp Bot 123:107–122CrossRef
    Mohammed MU, Bonnefille R (1998) A late Holocene pollen record from a highland peak at Tamsaa, Bale Mountains, South Ethiopia. Glob Planet Chang 16–17:121–129CrossRef
    Moreau RE (1963) Vicissitides of the African biomes in the late Pleistocene. Proc Zool Soc Lond 141:395–421CrossRef
    Nathan R (2006) Long-distance dispersal of plants. Science 313:786–788CrossRef PubMed
    Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C et al (2005) The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol 3(7):e196CrossRef PubMed PubMedCentral
    Popp M, Gizaw A, Nemomissa S, Suda J, Brochmann C (2008) Colonization and diversification in the African ‘sky islands’ by Eurasian Lychnis L. (Caryophyllaceae). J Biogeogr 35:1016–1029CrossRef
    Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959PubMed PubMedCentral
    Reznicek AA (1990) Evolution in sedges (Carex, Cyperaceae). Can J Bot 68:1409–1432CrossRef
    Rohlf F (2000) NTSYSpc: Numerical taxonomy and multivariate analysis system. Version 2.11a. Exeter Software, Setauket, New York
    Rosenberg NA (2004) DISTRUCT: a program for the graphical display of population structure. Mol Ecol Notes 4:137–138CrossRef
    Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MV (2002) Genetic structure of human populations. Science 298:2381–2385CrossRef PubMed
    Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145:1219–1228PubMed PubMedCentral
    Schönswetter P, Tribsch A (2005) Vicariance and dispersal in the alpine perennial Bupleurum stellatum L. (Apiaceae). Taxon 54:725–732CrossRef
    Starr JR, Ford BA (2009) Phylogeny and evolution in Cariceae (Cyperaceae): current knowledge and future directions. Bot Rev 75:110–137CrossRef
    Trauth MH, Maslin MA, Deino A, Strecker MR (2005) Late cenozoic moisture history of East Africa. Science 309:2051–2053CrossRef PubMed
    Van de Peer Y, De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10:569–570PubMed
    Van Zinderen Barker EM (1962) A late-glacial and post-glacial climatic correlation between East Africa and Europe. Nature 194:201–203CrossRef
    Verdcourt B (2010) Carex. In: Beentje HJ, Ghazanfar SA (eds) Flora of Tropical East Africa. Richmond Kew Publishing, Kew
    Volkova PA, Shipunov AB, Elven R, Brochmann C (2008) The seashore sedges of the Russian Kola Peninsula: how many species? Flora 203:523–533CrossRef
    Wondimu T, Gizaw A, Tusiime FM, Masao CA, Abdi AA, Gussarova G, Popp M, Nemomissa S, Brochmann C (2014) Crossing barriers in an extremely fragmented system: two case studies in the afro-alpine sky island flora. Plant Syst Evol 300:415–430CrossRef
    Yalden DW (1983) The extent of high ground in Ethiopia compared to the rest of Africa. SINET 6:35–38
  • 作者单位:Abel Gizaw (1) (2)
    Tigist Wondimu (1) (2)
    Tusiime Felly Mugizi (1) (3)
    Catherine Aloyce Masao (1) (4)
    Ahmed Abdikadir Abdi (1) (5)
    Magnus Popp (1)
    Dorothee Ehrich (6)
    Sileshi Nemomissa (2)
    Christian Brochmann (1)

    1. Natural History Museum, University of Oslo, Blindern, P.O. Box 1172, 0318, Oslo, Norway
    2. Department of Plant Biology and Biodiversity Management, Addis Ababa University, P.O. Box 3434, Addis Ababa, Ethiopia
    3. Department of Forestry, Biodiversity and Tourism, School of Forestry, Environmental and Geographical Sciences, Makerere University, P.O. Box 7062, Kampala, Uganda
    4. Department of Forest Biology, Sokoine University of Agriculture, P.O. Box 3010, Morogoro, Tanzania
    5. Botany Department, National Museums of Kenya, P.O. Box 40658-00100, Nairobi, Kenya
    6. Institute for Arctic and Marine Biology, University of Tromsø, 9037, Tromsø, Norway
  • 刊物主题:Plant Sciences; Plant Ecology; Ecology; Life Sciences, general; Forestry;
  • 出版者:Springer Basel
  • ISSN:1664-221X
文摘
The naturally fragmented habitat on the tallest African mountains provides a good model system to study vicariance, dispersal, and hybridization. Many mountains are separated by lowland that likely was unsuitable for high-alpine plants even during cold climatic periods. We explore the relative importance of these processes using two endemic sister species: the widespread Ethiopian/eastern East African Carex monostachya and the mainly western East African C. runssoroensis. These bog-forming sedges co-occur in some mountains and are hypothesized to hybridize. The two species were distinctly differentiated for genome-wide amplified fragment length polymorphisms (AFLPs), also in one mountain where they co-occur. However, the plants from another mountain showed strong signals of admixture. The results suggest initial divergence into one western and one northern/eastern lineage, followed by long-distance dispersal resulting in secondary contact zones. In addition within species genetic diversity was clearly structured with distinct genetic groups on some, but not all mountains. Differentiation levels varied considerably and did not always correspond to the extent of lowland habitat between mountains. The narrow Rift Valley in the otherwise nearly contiguous highlands in Ethiopia appears to present a much stronger barrier to dispersal than the extensive lowlands separating Ethiopia from East Africa. This may be a general pattern since it has been documented also for other afro-alpine species.

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