Comparison of the diversity, composition, and host recurrence of xylariaceous endophytes in subtropical, cool temperate, and subboreal regions in Japan

详细信息    查看全文

• 作者：Anzu Ikeda (1)
  Shunsuke Matsuoka (1)
  Hayato Masuya (2)
  Akira S. Mori (3)
  Dai Hirose (4)
  Takashi Osono (1)
  
• 关键词：Climate ; Foliar endophytic fungi ; Interaction network ; rDNA sequence analysis ; Xylariaceae
• 刊名：Population Ecology
• 出版年：2014
• 出版时间：April 2014
• 年：2014
• 卷：56
• 期：2
• 页码：289-300
• 全文大小：823 KB
• 参考文献：1. Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-402 CrossRef
  2. Amend AS, Seifert KA, Samson R, Bruns TD (2010) Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics. Proc Natl Acad Sci USA 107:13748-3753 CrossRef
  3. Arnold AE (2007) Understanding the diversity of foliar endophytic fungi: progress, challenges, and frontiers. Fungal Biol Rev 21:51-6 CrossRef
  4. Arnold AE (2008) Endophytic fungi: hidden components of tropical community ecology. In: Carson WP, Schnitzer SA (eds) Tropical forest community ecology. Wiley-Blackwell, West Sussex, pp 254-71
  5. Arnold AE, Lutzoni F (2007) Diversity and host range of foliar endophytes: are tropical leaves biodiversity hotspots? Ecology 88:541-49 CrossRef
  6. Arnold AE, Maynard Z, Gilbert GS, Coley PD, Kursar TA (2000) Are tropical fungal endophytes hyperdiverse? Ecol Lett 3:267-74 CrossRef
  7. Balasuriya A, Adikaram NKB (2009) Some spatial, temporal and spatio- temporal considerations of wood decay of tea ( / Camellia sinensis), caused by / Nemania diffusa (Syn. / Hypoxylon vestitum). Crop Prot 28:273-79 CrossRef
  8. Blüthgen N, Menzel F, Blüthgen N (2006) Measuring specialization in species interaction networks. BMC Ecol 6:9 CrossRef
  9. Chareprasert S, Piapukiew J, Thienhirun S, Whalley AJS, Sihanonth P (2006) Endophytic fungi of teak leaves / Tectona grandis L. and rain tree leaves / Samanea saman Merr. World J Microbiol Biotechnol 22:481-86 CrossRef
  10. Coleman BD, Mao CX, Chang J (2004) Interpolating, extrapolating and comparing incidence-based species accumulation curves. Ecology 85:2717-727 CrossRef
  11. Collado J, Platas G, Gonzalez I, Pelaez F (1999) Geographical and seasonal influenceon the distribution of fungal endophytes in / Quercus ilex. New Phytol 144:525-32 CrossRef
  12. Davis EC, Shaw AJ (2008) Biogeographic and phylogenetic patterns in diversity of liverwort-associated endophytes. Am J Bot 95:914-24 CrossRef
  13. Enoki T (2003) Microtopography and distribution of canopy trees in a subtropical evergreen broad-leaved forest in the northern part of Okinawa Island, Japan. Ecol Res 18:103-13 CrossRef
  14. Frohlich J, Hyde KD, Petrini O (2000) Endophytic fungi associated with palms. Mycol Res 104:1202-212 CrossRef
  15. Gardes M, Bruns TD (1993) ITS primer with enhanced specificity for basidiomycetes: application to the identification of mycorrhizae and rust. Mol Ecol 21:113-18 CrossRef
  16. Gotelli NJ, Colwell RK (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecol Lett 4:379-91 CrossRef
  17. Hawksworth DL (2001) The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycol Res 105:1422-432 CrossRef
  18. Hillebrand H (2004) On the generality of the latitudinal diversity gradient. Am Nat 163:192-11 CrossRef
  19. Hsieh HM, Ju YM, Rogers JD (2005) Molecular phylogeny of / Hypoxylon and closely related genera. Mycologia 97:844-65 CrossRef
  20. Hsieh HM, Lin CR, Fang MJ, Rogers JD, Fournier J, Lechat C, Ju YM (2010) Phylogenetic status of / Xylaria subgenus / Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily. Mol Phylogenet Evol 54:957-69 CrossRef
  21. Huang XQ, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9:868-77 CrossRef
  22. Joshee S, Paulus BC, Park D, Johnston PR (2009) Diversity and distribution of fungal foliar endophytes in New Zealand Podocarpaceae. Mycol Res 113:1003-015 CrossRef
  23. Ju YM, Rogers JD (2002) The genus / Nemania (Xylariaceae). Nova Hedwig 74:75-20 CrossRef
  24. Kinkel LL, Andrews JH (1988) Disinfection of living leaves by hydrogen peroxide. Trans Br Mycol Soc 91:523-28 CrossRef
  25. Kubota Y (2000) Spatial dynamics of regeneration in a conifer/broad-leaved forest in northern Japan. J Veg Sci 11:633-40 CrossRef
  26. Linaldeddu BT, Sirca C, Spano D, Franceschini A (2011) Variation of endophytic cork-oak associated fungal communities in relation to plant health and water stress. Forest Pathol 41:193-01 CrossRef
  27. Matsuda Y, Hijii N (1999) Characterization and identification of / Strobilomyces confusus ectomycorrhizas on momi fir by RFLP analysis of the PCR-amplified ITS region of the rDNA. J For Res 4:145-50 CrossRef
  28. Miura K, Kudo M (1970) An agar-medium for aquatic hyphomycetes. Trans Mycol Soc Japan 11:116-18 (in Japanese with English abstract)
  29. Morakotkarn D, Kawasaki H, Seki T (2007) Molecular diversity of bamboo-associated fungi isolated from Japan. FEMS Microb Let 266:10-9 CrossRef
  30. O’Donnell K (1993) / Fusarium and its near relatives. In: Reynolds DR, Taylor JW (eds) The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics. CAB International, Wallingford, pp 225-33
  31. Okane I, Srikitikulchai P, Toyama K, L?ss?e T, Sivichai S, Hywel-Jones N, Nakagiri A, Potacharoen W, Suzuki K (2008) Study of endophytic Xylariaceae in Thailand: diversity and taxonomy inferred from rDNA sequence analyses with saprobes forming fruit bodies in the field. Mycoscience 49:359-72 CrossRef
  32. Okane I, Srikitikulchai P, Tabuchi Y, Sivichai S, Nakagiri A (2012) Recognition and characterization of four Thai xylariaceous fungi inhabiting various tropical foliages as endophytes by DNA sequences and host plant preference. Mycoscience 53:122-32 CrossRef
  33. Oksanen JF, Blanchet G, Kindt R, Legendre P, O’Hara RB, Simpson GL, Solymos P, Stevens MHM, Wagner H (2010) Vegan: community ecology package. R package version 1.17-4
  34. Opik MM, Moora J, Liira J, Zobel M (2006) Comparison of root-colonizing arbuscular mycorrhizal fungal communities in different ecosystems around the globe. J Ecol 94:778-90 CrossRef
  35. Osono T (2008) Endophytic and epiphytic phyllosphere fungi of / Camellia japonica: seasonal and leaf age dependent variations. Mycologia 100:387-91 CrossRef
  36. Osono T (2011) Diversity and functioning of fungi associated with leaf litter decomposition in Asian forests of different climatic regions. Fungal Ecol 4:375-85 CrossRef
  37. Osono T, Masuya H (2012) Endophytic fungi associated with leaves of Betulaceae in Japan. Can J Microbiol 58:507-15 CrossRef
  38. Osono T, Mori A (2005) Seasonal and leaf age-dependent changes in occurrence of phyllosphere fungi of giant dogwood. Mycoscience 46:273-79 CrossRef
  39. Osono T, Takeda H (1999) A methodological survey on incubation of fungi on leaf litter of / Fagus crenata. Appl For Sci Kansai 8:103-08 (in Japanese with English abstract)
  40. Osono T, To-Anun C, Hagiwara Y, Hirose D (2011a) Decomposition of wood, petiole, and leaf litter by / Xylaria species from northern Thailand. Fungal Ecol 4:210-18 CrossRef
  41. Osono T, Hagiwara Y, Masuya H (2011b) Effects of temperature and litter type on fungal growth and decomposition of leaf litter. Mycoscience 52:327-32 CrossRef
  42. Osono T, Tateno O, Masuya H (2013) Diversity and ubiquity of xylariaceous endophytes in live and dead leaves of temperate forest trees. Mycoscience 53:54-1 CrossRef
  43. Peláez FV, González V, Platas G, Sánchez-Ballesteros J, Rubio V (2008) Molecular phylogenetic studies within the Xylariaceae based on ribosomal DNA sequences. Fungal Divers 31:111-34
  44. Petrini L, Petrini O (1985) Xylariaceous fungi as endophytes. Sydowia 38:216-34
  45. Petrini O, Fisher PJ (1988) A comparative study of fungal endophytes in xylem and whole stem of / Pinus sylvestris and / Fagus sylvatica. Trans Br Mycol Soc 91:233-38 CrossRef
  46. Petrini O, Fisher PJ (1990) Occurrence of fungal endophytes in twigs of / Salix fragilis and / Quercus robur. Mycol Res 94:1077-080 CrossRef
  47. Petrini O, Petrini LE, Rodrigues KF (1995) Xylariaceous endophytes: an exercise in biodiversity. Fitopatologia Brasieira 20:531-39
  48. Pielou EC (1966) The measurement of diversity in different types of biological collections. J Theor Biol 13:131-44 CrossRef
  49. R Development Core Team (2011) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna
  50. Rodrigues KF (1994) The foliar fungal endophytes of the Amazonian palm / Euterpe oleracea. Mycologia 86:376-85 CrossRef
  51. Rodrigues KF, Samuels GJ (1999) Fungal endophytes of / Spondias mombin leaves in Brazil. J Basic Microbiol 39:131-35 CrossRef
  52. Rogers JD (1984) / Xylaria magnoliae sp. nov. and comments on several other fruit-inhabiting species. Can J Bot 57:941-45 CrossRef
  53. Rogers JD (2000) Thoughts and musings on tropical Xylariaceae. Mycol Res 104:1412-420 CrossRef
  54. Schleuning M, Fründ J, Klein AM, Abrahamczyk S, Alarcón R, Albrecht M, Andersson GKS, Bazarian S, B?hning-Gaese K, Bommarco R, Dalsgaard B, Dehling DM, Hagen AGM, Hickler T, Holzschuh A, Kaiser-Bunbury CN, Kreft H, Morris RJ, Sandel B, Sutherland WJ, Svenning JC, Tscharntke T, Watts S, Weiner CN, Werner M, Williams NM, Winqvist C, Dormann CF, Blüthgen N (2012) Specialization of mutualistic interaction networks decreases toward tropical latitudes. Cur Biol 22:1- CrossRef
  55. Sieber TN (2007) Endophytic fungi in forest trees: are they mutualists? Fungal Biol Rev 2:75-9 CrossRef
  56. Soca-Chafre G, Rivera-Orduna FN, Hidalgo-Lara ME, Hernandez-Rodriguez C, Marsch R, Flores-Cotera LB (2011) Molecular phylogeny and paclitaxel screening of fungal endophytes from / Taxus globosa. Fungal Biol 115:143-56 CrossRef
  57. Stadler M, Fournier J, Laessoe T, Lechat C, Tichy HV, Piepenbring M (2008) Recognition of hypoxyloid and xylarioid / Entonaema species and allied / Xylaria species from a comparison of holomorphic morphology, HPLC profiles, and ribosomal DNA sequences. Mycol Progr 7:53-3 CrossRef
  58. Tang AMC, Jeewon R, Hyde KD (2007) Phylogenetic relationships of / Nemania plumbea sp. nov. and related taxa based on ribosomal ITS and RPB2 sequences. Mycol Res 111:392-02 CrossRef
  59. Tang AMC, Jeewon R, Hyde KD (2009) A re-evaluation of the evolutionary relationships within the Xylariaceae based on ribosomal and protein-coding gene sequences. Fungal Divers 34:127-55
  60. Tateno R, Takeda H (2003) Forest structure and tree species distribution in relation to topography-mediated heterogeneity of soil nitrogen and light at the forest floor. Ecol Res 18:559-71 CrossRef
  61. Tedersoo L, Nara K (2010) General latitudinal gradient of biodiversity is reversed in ectomycorrhizal fungi. New Phytol 185:351-54 CrossRef
  62. Tedersoo L, Nilsson RH, Abarenkov K, Jairus T, Sadam A, Saar I, Bahram M, Bechem E, Chuyong G, Koljalg U (2010) 454 pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol 188:291-01 CrossRef
  63. Unterseher M, Schnittler M (2010) Species richness analysis and ITS rDNA phylogeny revealed the majority of cultivable foliar endophytes from beech ( / Fagus sylvatica). Fungal Ecol 3:366-78 CrossRef
  64. Vega FE, Simpkins A, Aime MC, Posada F, Peterson SW, Rehner SA, Infante F, Castillo A, Arnold AE (2010) Fungal endophyte diversity in coffee plants from Colombia, Hawai’i, Mexico and Puerto Rico. Fungal Ecol 3:122-38 CrossRef
  65. Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several / Cryptococcus species. J Bacteriol 172:4238-246
  66. Whalley AJS (1993) Tropical Xylariaceae: their distribution and ecological characteristics. In: Issac S, Frankland JC, Watling R, Whalley AJS (eds) Aspects of tropical mycology. Cambridge University Press, Cambridge, pp 103-19
  67. Whalley AJS (1996) The xylariaceous way of life. Mycol Res 100:897-22 CrossRef
  68. Widden P, Parkinson D (1973) Fungi from Canadian coniferous forest soils. Can J Bot 51:2275-290 CrossRef
  69. Yuan ZL, Rao LB, Chen YC, Zhang CL, Wu YG (2011) From pattern to process: species and functional diversity in fungal endophytes of / Abies beshanzuensis. Fungal Biol 115:197-13 CrossRef
  70. Zhou D, Hyde KD (2001) Host-specificity, host-exclusivity, and host-recurrence in saprobic fungi. Mycol Res 105:1449-457 CrossRef
  
• 作者单位：Anzu Ikeda (1)
  Shunsuke Matsuoka (1)
  Hayato Masuya (2)
  Akira S. Mori (3)
  Dai Hirose (4)
  Takashi Osono (1)
  
  1. Center for Ecological Research, Kyoto University, Hirano 2-509-3, Otsu, Shiga, 520-2113, Japan
  2. Forestry and Forest Products Research Institute, Tsukuba, Ibaraki, 305-8687, Japan
  3. Graduate School of Environmental and Information Science, Yokohama National University, Yokohama, Kanagawa, 240-8501, Japan
  4. College of Pharmacy, Nihon University, Funabashi, Chiba, 274-8555, Japan
  
• ISSN：1438-390X

文摘

The diversity, composition, and host recurrence of endophytic fungi in the Xylariaceae were compared in subtropical (ST), cool temperate (CT), and subboreal forests (SB) in Japan based on the 28S ribosomal DNA sequences from fungal isolates. A total of 610 isolates were obtained from the leaves of 167 tree species in three sites, which were classified into 42 operational taxonomic units (OTUs) at the 99?% similarity level of the 28S rDNA sequence. ST, CT, and SB yielded 31, 13, and three OTUs, respectively. The OTU richness, diversity, and evenness of fungal communities were in the order: ST?>?CT?>?SB. The 42 OTUs were assigned to nine genera in the Xylariaceae: Xylaria, Annulohypoxylon, Anthostomella, Biscogniauxia, Nemania, Hypoxylon, Muscodor, Daldinia, and Rosellinia. Xylarioid isolates in the subfamily Xylarioideae outnumbered Hypoxyloid isolates in the subfamily Hypoxyloideae in ST and CT, whereas the opposite was found in SB. S?rensen’s quotient of similarity was generally low between the three sites. Host recurrence of fungal OTUs was evaluated with the degree of specialization of interaction network between xylariaceous endophytes and plant species and compared between the three sites. We found that the networks in the three sites showed a significantly higher degree of specialization than simulated networks, where partners were associated randomly. Permutational multivariate analyses of variance indicated that plant family and leaf trait significantly affected the OTU composition in ST, which can account for the specialization of interaction network and host recurrence of xylariaceous endophytes.