Physiology in the service of fisheries science: Why thinking mechanistically matters

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• 作者：Andrij Z. Horodysky ; Steven J. Cooke…
• 关键词：Aquaculture ; Bycatch ; Climate change ; Ecology ; Fisheries ; Fry鈥檚 paradigm ; Physiology ; Post ; release survival
• 刊名：Reviews in Fish Biology and Fisheries
• 出版年：2015
• 出版时间：September 2015
• 年：2015
• 卷：25
• 期：3
• 页码：425-447
• 全文大小：1,289 KB
• 参考文献：Ahrens RNM, Walters CJ, Christensen V (2012) Foraging arena theory. Fish Fish 13(1):41鈥?9
  Allison EH, Perry AL, Badjeck M-C et al (2009) Vulnerability of national economies to the impacts of climate change on fisheries. Fish Fish 10:173鈥?96
  Alunno-Bruscia M, van der Veer H, Kooijman SALM (2009) The AquaDEB project (phase I): analysing the physiological flexibility of aquatic species and connecting physiological diversity to ecological and evolutionary processes by using Dynamic Energy Budgets. J Sea Res 62:43鈥?8
  Ara煤jo MB, Peterson AT (2012) Uses and misuses of bioclimatic envelope modeling. Ecology 93:1527鈥?539PubMed
  Beamish FWH (1978) Swimming capacity. In: Hoar WS, Randall DJ (eds) Fish physiology, vol VII. Academic Press, New York, pp 101鈥?87
  Beitinger TL, Fitzpatrick LC (1979) Physiological and ecological correlates of preferred temperature in fish. Am Zool 19:319鈥?29
  Bernal D, Sepulveda C, Musyl M, Brill R (2009) The eco-physiology of swimming and movement patterns of tunas, billfishes, and large pelagic sharks. In: Domenici P, Kapoor BG (eds) Fish locomotion: an etho-ecological approach. Science Publishers, Enfield, pp 436鈥?83
  Bigelow KA, Maunder MN (2007) Does habitat or depth influence catch rates of pelagic species? Can J Fish Aquat Sci 64:1581鈥?594
  Block BA, Dewar H, Blackwell SB et al (2001) Migratory movements, depth preferences, and thermal biology of Atlantic bluefin tuna. Science 293:1310鈥?314PubMed
  Braaten PJ, Guy CS (1999) Relations between physicochemical factors and abundance of fishes in tributary confluences of the lower channelized Missouri River. Trans Am Fish Soc 128:1213鈥?221
  Brander KM (2007) Global fish production and climate change. Proc Nat Acad Sci USA 104:19709鈥?9714PubMed Central PubMed
  Brander K (2010) Impacts of climate change on fisheries. J Mar Syst 79:389鈥?02
  Braun CD, Kaplan MB, Horodysky AZ, Llopiz JK (2015) Satellite telemetry reveals physical processes driving billfish behavior. Anim Biotelemetry 3:2
  Bridger CJ, Booth RK (2003) The effects of biotelemetry transmitter presence and attachment procedures on fish physiology and behavior. Rev Fish Sci 11:13鈥?4
  Brill RW (1994) A review of temperature and oxygen tolerance studies of tunas pertinent to fisheries oceanography, movement models and stock assessments. Fish Oceanogr 3:204鈥?16
  Brill R, Lutcavage M (2001) Understanding environmental influences on movements and depth distribution of tunas and billfish can significantly improve stock assessments. In: Sedberry GR (ed) Island in the stream: oceanography and fisheries of the charleston bump, Am Fish Soc Symp 25, Bethesda, pp 179鈥?98
  Brill RW, Lowe TE, Cousins KL (1998) How water temperature really limits the vertical movements of tunas and billfishes鈥攊t鈥檚 the heart stupid. In: Gamperl K, Farrell A, MacKinlay D (eds) International conference of biological fishers, pp 57鈥?2
  Brill R, Block B, Boggs C, Bigelow K, Freund E, Marcinek D (1999) Horizontal movements and depth distribution of large, adult yellowfin tuna (Thunnus albacares) near the Hawaiian Islands, recorded using ultrasonic telemetry: implications for the physiological ecology of pelagic fishes. Mar Biol 133:395鈥?08
  Brill RW, Bigelow KA, Musyl MK, Fritsches KA, Warrant EJ (2005) Bigeye tuna behavior and physiology鈥?their relevance to stock assessments and fishery biology. Coll Vol Sci Pap Int Comm Cons Atl Tunas 57:142鈥?61
  Brill R, Bushnell P, Schroff S, Seifert R, Galvin M (2008a) Effects of anaerobic exercise accompanying catch-and-release fishing on blood-oxygen affinity of the sandbar shark (Carcharhinus plumbeus, Nardo). J Exp Mar Biol Ecol 34:132鈥?43
  Brill RW, Magel C, Davis MW, Hannah RW, Rankin PS (2008b) Effects of events accompanying capture (rapid decompression and exposure to bright light) on visual function in black rockfish (Sebastes melanops) and Pacific halibut (Hippoglossus stenolepis). Fish Bull 106:427鈥?37
  Brill R, Bushnell P, Smith L, Speaks C, Sundaram R, Stroud E, Wang J (2009) The repulsive and feeding-deterrent effects of electropositive metals on juvenile sandbar sharks (Carcharhinus plumbeus). Fish Bull 107:298鈥?07
  Brown JH, Gillooly JF, Allen AP, Savage VM, West GB (2004) Toward a metabolic theory of ecology. Science 85(7):1771鈥?789
  Brownscombe JW, Thiem JD, Hatry C, Cull F, Haak CR, Danylchuk AJ, Cooke SJ (2013) Recovery bags reduce post-release impairments in locomotory activity and behaviour of bonefish (Albula spp.) following exposure to angling-related stressors. J Exp Mar Biol Ecol 440:207鈥?15
  Bulger AJ, Hayden BP, Monaco ME, Nelson DM, McCormick-Ray MG (1993) Biologically-based estuarine salinity zones derived from a multivariate analysis. Estuaries 16:311鈥?22
  Capossela KM, Fabrizio MC, Brill RW (2013) Migratory and within-estuary behaviors of adult summer flounder (Paralichthys dentatus) in a lagoon system of the southern mid-Atlantic Bight. Fish Bull 111:189鈥?01
  Carlson SM, Seamons TR (2008) A review of quantitative genetic components of fitness in salmonids: implications for adaptation to future change. Evol Appl 1:222鈥?38PubMed Central PubMed
  Cayr茅 P, Marsac F (1993) Modeling the yellowfin tuna (Thunnus albacares) vertical distribution using sonic tagging results and local environmental parameters. Aquat Liv Res 6:1鈥?4
  Cheung WWL, Lam VWY, Sarmiento JL, Kearney K, Watson R, Zeller D, Pauly D (2010) Large-scale redistribution of maximum fisheries catch potential in the global ocean under climate change. Glob Change Biol 16:24鈥?5
  Chown SL, Gaston KJ (2008) Macrophysiology for a changing world. Proc R Soc B 275:1469鈥?478PubMed Central PubMed
  Chown SL, Gaston KJ, Robinson D (2004) Macrophysiology: large-scale patterns in physiological traits and their ecological implications. Funct Ecol 18:159鈥?67
  Claireaux G, Lefrancoise C (2007) Linking environmental variability and fish performance: integration through the concept of scope for activity. Phil Trans R Soc B 362:2031鈥?041PubMed Central PubMed
  Clark TD, Sandblom E, Jutfelt F (2013) Aerobic scope measurements of fishes in an era of climate change: respirometry, relevance and recommendations. J Exp Biol 216:2771鈥?782PubMed
  Colosimo A, Guiliani A, Maranghi F et al (2003) Physiological and genetic adaptation to temperature in fish populations. Cont Shelf Res 23:1919鈥?928
  Cooke SJ, O鈥機onnor CM (2010) Making conservation physiology relevant to policy makers and conservation practitioners. Conserv Lett 2:159鈥?66
  Cooke SJ, Philipp DP (2004) Behavior and mortality of caught-and-released bonefish (Albula vulpes) in Bahamian waters with implications for a sustainable recreational fishery. Biol Conserv 118:599鈥?07
  Cooke SJ, Schramm HL (2007) Catch-and-release science and its application to conservation and management of recreational fisheries. Fish Manag Ecol 14:73鈥?9
  Cooke SJ, Suski CD (2008) Ecological restoration and physiology: an overdue integration. Biosci 58:957鈥?68
  Cooke SJ, Schreer JF, Dunmall KM, Philipp DP (2002) Strategies for quantifying sublethal effects of marine catch-and-release angling鈥攊nsights from novel freshwater applications. Am Fish Soc Symp 30:121鈥?34
  Cooke SJ, Hinch SG, Farrell AP et al (2008) Mechanistic understanding of fish migrations by linking telemetry with physiology, behavior, genomics and experimental biology: an interdisciplinary case study on adult Fraser River sockeye salmon. Fisheries 33:321鈥?39
  Cooke SJ, Hinch SG, Lucas MC, Lutcavage M (2012a) Chapter 18鈥攂iotelemetry and biologging. In: Zale AV, Parrish DL, Sutton TM (eds) Fisheries techniques, 3rd edn. American Fisheries Society, Bethesda, pp 819鈥?60
  Cooke SJ, Hinch SG, Donaldson MR et al (2012b) Conservation physiology in practice: how physiological knowledge has improved our ability to sustainably manage Pacific salmon during up-river migration. Phil Trans Roy Soc B. 367:1757鈥?769
  Cooke SJ, Sack L, Franklin CE, Farrell AP, Beardall J, Wikelski M, Chown SL (2013) What is conservation physiology? Perspectives on an increasingly integrated and essential science. Conserv Physiol. doi:10.鈥?093/鈥媍onphys/鈥媍ot001
  Cooke SJ, Blumstein DT, Buchholz R et al (2014) Physiology, behaviour and conservation. Physiol Biochem Zool 87:1鈥?4PubMed
  Covich AP, Fritz SC, Lamb PJ, Marzolf RD, Matthews WJ, Poiani KA, Prepas EE, Richman MB, Winter TC (1997) Potential effects of climate change on aquatic ecosystems of the great Plains of North America. Hydrolog Process 11:993鈥?021
  Crossin GT, Cooke SJ, Goldbogen JA, Phillips RA (2014) Tracking fitness in marine vertebrates: a review of current knowledge and opportunities for future research. Mar Ecol Prog Ser 496:1鈥?7
  Danylchuk SE, Danylchuk AJ, Cooke SJ, Goldberg TL, Koppelman J, Philipp DP (2007) Effects of recreational angling on the post-release behavior and predation of bonefish (Albula vulpes): the role of equilibrium status at time of release. J Exp Mar Biol Ecol 346:127鈥?33
  Davie PS, Kopf RK (2006) Physiology, behavior, and welfare of fish during recreational fishing and after release. New Zealand Vet Journ 54:161鈥?72
  Davis MW (2002) Key principles for understanding fish bycatch discard mortality. Can J Fish Aquat Sci 59:1834鈥?843
  Davis MW, Ottmar ML (2006) Wounding and reflex impairment may be predictors for mortality in discarded or escaped fish. Fish Res 82:1鈥?
  Denny M, Helmuth B (2009) Confronting the physiological bottleneck: a challenge from ecomechanics. Integr Comp Biol 49:197鈥?01PubMed Central PubMed
  Devictor V, Clavel J, Julliard R, Lavergne S, Mouillot D, Thuiller W, Venail P, Vill茅ger S, Mouquet N (2010) Defining and measuring ecological specialization. J Appl Ecol 47:15鈥?5
  Edeline E, Carlson SM, Stige LC, Winfield IJ, Fletcher JM, James JB, Haugen TO, V酶llestad LA, Stenseth NC (2007) Trait changes in a harvested population are driven by a dynamic tug-of-war between natural and harvest selection. Proc Natl Acad Sci USA 104:15799鈥?5804PubMed Central PubMed
  Elton C (1927) Animal Ecology. Sedgwick and Jackson, London
  Essington TE, Beaudreau AH, Wiedenmann J (2006) Fishing through marine food webs. Proc Nat Acad Sci USA 103:3171鈥?175PubMed Central PubMed
  Evans K, Langley A, Clear NP et al (2008) Behaviour and habitat preferences of bigeye tuna (Thunnus obesus) and their influence on longline fishery catches in the western Coral Sea. Can J Fish Aquat Sci 65:2427鈥?443
  Farrell AP, Gallaugher PE, Fraser J et al (2001) Successful recovery of the physiological status of coho salmon on board a commercial gillnet vessel by means of a newly designed revival box. Can J Fish Aquat Sci 58:1932鈥?946
  Fraser PJ, Cruickshank SF, Shelmerdine RL, Smith LE (2008) Hydrostatic pressure receptors and depth usage in crustacea and fish. J Inst Nav 55:159鈥?65
  Frick LH, Reina RD, Walker TI (2009) The physiological response of Port Jackson sharks and Australian swell sharks to sedation, gill-net capture, and repeated sampling in captivity. N Am J Fish Manage 29:127鈥?39
  Fry FEJ (1947) Effect of environment on animal activity. Univ Toronto Stud Biol Ser 55:1鈥?2
  Fry FEJ (1971) The effect of environmental factors on the physiology of fish. In: Hoar WS, Randall DJ (eds) Fish physiology, vol VI. Environmental relations and behavior. Academic Press, New York, pp 1鈥?8
  Furey NB, Dance MA, Rooker JR (2013) Fine-scale movements and habitat use of juvenile southern flounder Paralichthys lethostigma in an estuarine seascape. J Fish Biol 82:1469鈥?483PubMed
  Galli GLJ, Shiels HA, Brill RW (2009) Temperature sensitivity of cardiac function in pelagic fishes with different vertical mobilities: yellowfin tuna (Thunnus albacares), bigeye tuna (Thunnus obesus), mahimahi (Coryphaena hippurus), and swordfish (Xiphias gladius). Physiol Biochem Zool 82:280鈥?90PubMed
  Gibson RN (2003) Go with the flow: tidal migration in marine animals. Hydrobiologia 503:153鈥?61
  Giomi F, Raicevich S, Giovanardi O, Pranovi F, DiMuro P, Beltramini M (2008) Catch me in winter! Seasonal variation in air temperature severely enhances physiological stress and mortality of species subjected to sorting operations and discarded during annual fishing activities. Hydrobiologia 606:195鈥?02
  Glass CW, Wardle CS (1995) Studies on the use of visual stimuli to control fish escape from codends. II. The effect of a black tunnel on the reaction behavior of fish in otter trawl codends. Fish Res 23:165鈥?74
  Goldman K, Anderson S, Latour R, Musick J (2004) Homethermy in adult salmon sharks, Lamna ditropis. Environ Biol Fishes 71:403鈥?11
  Grinnell J (1917) The niche-relationships of the California Thrasher. Auk 34:427鈥?33
  Gumm JM (2012) Sex recognition of female-like sneaker males in the Comanche Springs pupfish, Cyprinodon elegans. Anim Behav 83:1421鈥?426
  Halpern BS, Walbridge S, Selkoe KA et al (2008) A global map of human impact on marine ecosystems. Science 319(5865):948鈥?52PubMed
  Halpern BS, Longo C, Hardy D et al (2012) An index to assess the health and benefits of the global ocean. Nature 488:615鈥?20PubMed
  Hara TJ, Zielinski BS (2007) Sensory systems neuroscience. Fish Physiology 25, Academic Press, San Diego
  Hare JA, Alexander MA, Fogarty MJ, Williams EH, Scott JD (2010) Forecasting the dynamics of a coastal fishery species using a coupled climate-population model. Ecol Appl 20:452鈥?64PubMed
  Healy K, McNally L, Ruxton GD, Cooper N, Jackson AL (2013) Metabolic rate and body size are linked with perception of temporal information. Anim Behav 86:685鈥?96PubMed Central PubMed
  Helmuth B (2009) From cells to coastlines: how can we use physiology to forecast the impacts of climate change? J Exp Biol 212:753鈥?60PubMed
  Helmuth B, Kingsolver JG, Carrington E (2005) Biophysics, physiological ecology, and climate change: does mechanism matter? Ann Rev Physiol 67:177鈥?01
  Hinch SG, Farrell AP, Cooke SJ et al (2009) Using physiological telemetry and intervention experiments to examine the maladaptive shift in Fraser River鈥檚 Late-Run sockeye salmon spawning migration. Am Fish Soc Symp 69:891鈥?94
  Horodysky AZ, Brill RW, Fine ML, Musick JA, Latour RJ (2008a) Acoustic pressure and acceleration thresholds in six sciaenid fishes. J Exp Biol 211:1504鈥?511PubMed
  Horodysky AZ, Brill RW, Warrant EJ, Musick JA, Latour RJ (2008b) Comparative visual function in five sciaenid fishes. J Exp Biol 211:3601鈥?612PubMed
  Horodysky AZ, Brill RW, Warrant EJ, Musick JA, Latour RJ (2010) Comparative visual function in four piscivorous fishes inhabiting Chesapeake Bay. J Exp Biol 213:1751鈥?761PubMed
  Horodysky AZ, Brill RW, Bushnell PG, Musick JA, Latour RJ (2011) Comparative metabolic rates of common western North Atlantic sciaenid fishes. J Fish Biol 79:235鈥?55PubMed
  Huey RB (1991) Physiological consequences of habitat selection. Am Nat 137:S91鈥揝115
  Hugie DM, Dill LM (1994) Fish and game: a game theoretic approach to habitat selection by predators and prey. J Fish Biol 45:151鈥?69
  Hurlbert SH (1984) Pseudoreplication and the design of ecological field experiments. Ecol Monogr 54:187鈥?11
  Hussey NE, Kessel ST, Aarestrup K, Cooke SJ, Cowley PD, Fisk AT, Harcourt RG, Holland KN, Iverson SJ, Kocik JF, Mills Flemming JE, Whoriskey FG (2015) Aquatic animal telemetry: a panoramic window into the underwater world. Science 348:1221鈥?231
  Hutchenson GE (1957) Concluding remarks. Cold Spring Harbor Symp Quant Biol. 22:415鈥?27
  Hutchenson GE (1978) An introduction to population ecology. Tale University Press, New Haven
  Ingolfsson OA, Soldal A, Huse I, Breen MB (2007) Escape mortality of cod, saithe, and haddock in a Barents Sea trawl fishery. ICES J Mar Sci 64:836鈥?844
  IPCC (2001) Climate change 2001, synthesis report: a contribution of working groups I, II, and III to the third assessment report of the intergovernmental panel on climate change. Cambridge University Press, Cambridge
  Iwama GK, Pickering AD, Sumpter JP, Schreck CB (1997) Fish stress and health in aquaculture. Society for Experimental Biology Seminar Series 62. Cambridge University Press, Cambridge
  Jackson JBC, Kirby MX, Berger WH et al (2001) Historical overfishing and recent collapse of coastal ecosystems. Science 293:629鈥?38PubMed
  Jacquet JL, Pauly D (2007) The rise of seafood awareness campaigns in an era of collapsing fisheries. Mar Pol 31:308鈥?13
  Jeschke JM, Strayer DL (2008) Usefulness of bioclimatic models for studying climate change and invasive species. Ann NY Acad Sci 1134:1鈥?4PubMed
  Jobling M (1981) Temperature tolerance and the final preferendum鈥攔apid methods for the assessment of optimum growth temperatures. J Fish Biol 19:439鈥?55
  Josse E, Bach P, Dagorn L (1998) Simultaneous observations of tuna movements and their prey by sonic tracking and acoustic surveys. Hydrobiologia 317(372):61鈥?9
  Jusup M, Klanscek T, Matsuda H, Kooijman SALM (2011) A full lifecycle bioenergetic model for bluefin tuna. PLoS ONE 6:e21903PubMed Central PubMed
  Kaijura SM, Cornett AD, Yopak KE (2010) Sensory adaptations to the environment: electroreceptors as a case study. In: Carrier JC, Musick JA, Heithaus MR (eds) Sharks and their relatives II. Biodiversity, adaptive physiology, and conservation. CRC Press, Boca Raton, pp 393鈥?33
  Kaiser MJ, Spencer BE (1995) Survival of by-catch from a beam trawl. Mar Ecol Prog Ser 126:31鈥?8
  Kalinoski M, Hirons A, Horodysky A, Brill R (2014) Spectral sensitivity, light sensitivity, and temporal resolution of the visual systems in three sympatric coastal shark species: sandbar shark (Carcharhinus plumbeus), smooth dogfish (Mustelus canis canis), and spiny dogfish (Squalus acanthias). J Comp Physiol A 200:997鈥?013
  Kapoor BG, Hara TJ (2001) Sensory biology of jawed fishes: new insights. Science Publishers Inc, Huntington
  Kearney M (2006) Habitat, environment, and niche: What are we modeling? Oikos 115:186鈥?91
  Kearney M, Porter WP (2009) Mechanistic niche modelling: combining physiological and spatial data to predict species鈥?ranges. Ecol Lett 12:334鈥?50PubMed
  Kemp WM, Boynton WR, Adolf JE et al (2005) Eutrophication of Chesapeake Bay: historical trends and ecological interactions. Mar Ecol Progr Ser 303:1鈥?9
  Kerr SR, Werner EW (1980) Niche theory in fisheries ecology. Trans Am Fish Soc 109(2):254鈥?60
  Kerstetter DW, Luckhurst BE, Prince ED, Graves JE (2003) Use of pop-up satellite archival tags to demonstrate survival of blue marlin (Makaira nigricans) released from pelagic longline gear. Fish Bull 101:939鈥?48
  Kneebone J, Chisholm J, Bernal D, Skomal G (2013) The physiological effects of capture stress, recovery, and post-release survivorship of juvenile sand tigers (Carcharias taurus) caught on rod and reel. Fish Res 147:103鈥?14
  Kooijman SALM (2001) Quantitative aspects of metabolic organization; a discussion of concepts. Phil Trans R Soc B 356:331鈥?49PubMed Central PubMed
  Kooijman SALM (2010) Dynamic energy budget theory for metabolic organisation. Cambridge University Press, Cambridge
  Kotwicki S, De Robertis A, von Szalay P, Towler R (2009) The effect of light intensity on the availability of walleye pollock (Theragra chalcogramma) to bottom trawl and acoustic surveys. Can J Fish Aquat Sci 66:983鈥?94
  Kuparinen A, Merila J (2007) Detecting and managing fisheries-induced evolution. Trends Ecol Evol 22:652鈥?59PubMed
  Kupschus S, Tremain D (2001) Associations between fish assemblages and environmental factors in nearshore habitats of a subtropical estuary. J Fish Biol 58:1383鈥?403
  Ladich F, Collin SP, Moller P, Kapoor BG (2006) Communication in Fishes, Volumes 1 and 2. Science Publishers, Enfield
  Loretz CA (2008) Extracellular calcium-sensing receptors in fishes. Comp Biochem Physiol 149:225鈥?45
  Lowe T, Brill R, Cousins K (2000) Blood O2-binding characteristics of bigeye tuna (Thunnus obesus), a high-energy-demand teleost that is tolerant of low ambient O2. Mar Biol 136:1087鈥?098
  Lynch PD, Shertzer KW, Latour RJ (2012) Performance of methods used to estimate indices of abundance for highly migratory species. Fish Res 125鈥?26:27鈥?9
  Magel C, Wakefield K, Targett N, Brill R (2007) Activity in the pallial nerve of knobbed (Busycon carica) and channeled (Busycotypus canaliculatum) whelks recorded during exposure of the osphradium to odorant solutions. Fish Bull 105:485鈥?92
  Maguire J-J, Neis B, Sinclair PR (1994) What are we managing anyway? The need for an interdisciplinary approach to managing fisheries ecosystems. Intern Council Explor Sea CM-1994/T:48
  Mandelman JW, Farrington MA (2007) The physiological status and mortality associated with otter-trawl capture, transport, and captivity of an exploited elasmobranch, Squalus acanthias. ICES J Mar Sci 64:122鈥?30
  Mangel M, Stamps J (2001) Trade-offs between growth and mortality and the maintenance of individual variation in growth. Evol Ecol Res 3:583鈥?93
  Mandelman JW, Skomal GB (2009) Differential sensitivity to capture stress assessed by blood acid鈥揵ase status in five carcharhinid sharks. J Comp Physiol B 179:267鈥?77PubMed
  Mangum CP, Hochachka PW (1998) New directions in comparative physiology and biochemistry: mechanisms, adaptations, and evolution. Physiol Biochem Zool 71:471鈥?84
  Marshall H, Field L, Afiadata A, Sepulveda C, Skomal G, Bernal D (2012) Hematological indicators of stress in longline-captured sharks. Comp Biochem Physiol A 162:121鈥?29
  Martin GR, Crawford R (2015) Reducing bycatch in gillnets: a sensory ecology perspective. Global Ecol Cons 3:28鈥?0
  Martin BT, Zimmer EI, Grimm V, Jager T (2012) Dynamic energy budget theory meets individual-based modelling: a generic and accessible implementation. Methods Ecol Evol 3:445鈥?49
  Mazur MM, Beauchamp DA (2003) A comparison of visual prey detection among species of piscivorous salmonids: effects of light and low turbidities. Environ Biol Fish 67:397鈥?05
  McKenzie DJ (2001) Effects of dietary fatty acids on the respiratory and cardiovascular physiology of fish. Comp Biochem Physiol A 128:607鈥?21
  Meka JM, Margraf FJ (2007) Using a bioenergetics model to assess growth reduction from catch-and-release fishing and hooking injury in rainbow trout, Oncorhynchus mykiss. Fish Manage Ecol 14:131鈥?39
  Metcalfe JD, Le Quesne WJF, Cheung WWL, Righton DA (2012) Conservation physiology for applied management of marine fish: an overview with perspectives on the role and value of telemetry. Philos Trans R Soc B Biol Sci 367:1746鈥?756
  Miller JM (1997) Opening address of the third flatfish symposium. J Sea Res 37:183鈥?86
  Mooney TA, Au WWL, Nachtigall PE, Trippel EA (2007) Acoustic and stiffness properties of gillnets as they relate to small cetacean bycatch. ICES J Mar Sci 64:1鈥?
  Moyes CD, Frugoso N, Musyl MK, Brill RW (2006) Predicting postrelease survival in large pelagic fish. Trans Am Fish Soc 135:1389鈥?397
  Musyl MK, Brill RW, Curran DS et al (2011) Post-release survival, vertical and horizontal movements, and thermal niche partitioning in five species of pelagic sharks. Fish Bull 109:341鈥?68
  Naylor RL, Goldburg RJ, Primavera JH et al (2000) Effect of aquaculture on world fish supplies. Nature 405:1017鈥?024PubMed
  Nearing J, Betka M, Quinn S, Hentschel H, Elger M, Baum M, Bai M, Chattopadyhay N, Brown EM, Herbert SC, Harris HW (2002) Polyvalent cation receptor proteins (CaRs) are salinity sensors in fish. Proc Natl Acad Sci USA 99:9231鈥?236PubMed Central PubMed
  Neill WH, Miller JM, Van Der Veer HK, Winemiller KO (1994) Ecophysiology of marine fish recruitment: a conceptual framework for understanding interannual variability. Neth J Sea Res 32:135鈥?52
  Nisbet RM, Jusup M, Klanjscek T, Pecquerie L (2012) Integrating dynamic energy budget (DEB) theory with traditional bioenergetic models. J Exp Biol 215:892鈥?02PubMed
  Ohlberger J, Staaks G, Petzoldt T, Mehner T, Holker F (2008) Physiological specialization by thermal adaptation drives ecological divergence in a sympatric species pair. Evol Ecol Res 10:1173鈥?185
  Olla BL, Davis MW, Rose C (2000) Differences in orientation and swimming of walleye Pollock Theragra chalcogramma聽in a trawl net under light and dark conditions: concordance between field and laboratory observations. Fish Res 44:261鈥?66
  Parmesan C (2006) Ecological and evolutionary responses to recent climate change. Ann Rev Ecol Evol Syst 37:637鈥?69
  Pauly D, Christensen V, Dalsgaard J, Froese R, Torres F (1998) Fishing down marine food webs. Science 279:860鈥?63PubMed
  Pelletier C, Hanson KC, Cooke SJ (2007) Do catch-and-release-guidelines from state and provincial fisheries agencies in North America conform to scientifically based best practices? Environ Manage 39:760鈥?73PubMed
  Perry AL, Low PJ, Ellis JR, Reynolds JR (2005) Climate change and distribution shifts in marine fishes. Science 308:1912鈥?915PubMed
  Petitgas P, Rijnsdorp AD, Dickey-Collas M, Engelhard GH, Peck MA, Pinnegar JK, Drinkwater K et al (2013) Impacts of climate change on the complex life cycles of fish. Fish Oceanogr 22:121鈥?39
  Pitcher TJ, Lam ME (2010) Fishful thinking: rhetoric, reality, and the Sea before us. Ecol Soc 15:12
  P枚rtner HO, Farrell AP (2008) Physiology and climate change. Science 322:690鈥?92PubMed
  P枚rtner HO, Peck MA (2010) Climate change effects on fishes and fisheries: towards a cause-and-effect understanding. J Fish Biol 77:1745鈥?779PubMed
  P枚rtner HO, Berdal B, Blust R et al (2001) Climate effects on growth performance, fecundity and recruitment in marine fish: developing a hypothesis for cause and effect relationships in Atlantic cod (Gadus morhua) and common eelpout (Zoarces viviparus). Cont Shelf Res 21:1975鈥?997
  Pranovi F, Raicevich S, Franceschini G, Torricelli P, Giovanardi O (2001) Discard composition and damage to non-target species in the 鈥樷€榬apido鈥欌€?trawl fishery. Mar Biol 139:863鈥?75
  Prince EP, Luo J, Goodyear CP et al (2010) Ocean scale hypoxia-based compression of Atlantic istiophorid billfishes. Fish Oceanogr 19:448鈥?62
  Raby GD, Donaldson MR, Hinch SG, Patterson DA, Lotto AG, Robichaud D, English KK, Willmore WW, Farrell AP, Davis MW, Cooke SJ (2012) Validation of reflex indicators for measuring vitality and predicting the delayed mortality of wild coho salmon bycatch released from fishing gears. J Appl Ecol 49:90鈥?8
  Ricklefs RE, Wikelski M (2002) The physiology/life-history nexus. Trends Ecol Evol 17:462鈥?68
  Roessig JM, Woodley CM, Cech JJ, Hansen LJ (2004) Effects of global climate change on marine and estuarine fishes. Rev Fish Biol Fish 14:215鈥?75
  Rosegrant MW, Cline SA (2003) Global food security: challenges and policies. Science 302:1917鈥?919PubMed
  Rosenberger AE, Chapman LJ (2000) Respiratory characters of three haplochromine cichlid species: implications for persistence in wetland refugia. J Fish Biol 57:483鈥?01
  Rothschild BJ, Beamish RJ (2009) On the future of fisheries science. In: Beamish RJ, Rothschild BJ (eds) The future of fisheries science in North America, Fish & Fisheries Series, Springer Science聽+聽Business Media B.V. Proceedings of the AIFRB Symposium held June 2007, Halifax NS, pp 1鈥?2
  Rutz C, Hays G (2009) New frontiers in biologging science. Biol Lett 5:289鈥?92PubMed Central PubMed
  Schramski JR, Dell AI, Grady JM, Sibly RM, Brown JH (2015) Metabolic theory predicts whole-ecosystem properties. Proc Natl Acad Sci 112:2617鈥?622PubMed
  Schreck CB, Scanlon PF (1977) Endocrinology in fisheries and wildlife: biology and management. Fisheries 2:20鈥?0
  Scott GR, Sloman KA (2004) The effects of environmental pollutants on complex fish behaviour: integrating behavioural and physiological indicators of toxicity. Aquat Toxicol 68:369鈥?92PubMed
  Seebacher F, Franklin CE (2012) Determining environmental causes of biological effects: the need for a mechanistic physiological dimension in conservation biology. Philos Trans R Soc B 367:1607鈥?614
  Shultz AD, Murchie KJ, Griffith C, Cooke SJ, Danylchuk AJ, Goldberg TL, Suski CD (2011) Impacts of dissolved oxygen on the behavior and physiology of bonefish: implications for live release angling tournaments. J Exp Mar Biol Ecol 402:19鈥?6
  Sih A, Stamps J, Yang LH, McElreath R, Ramenofsky M (2010) Behavior as a key component of integrative biology in a human-altered world. Integr Comp Biol 50:934鈥?44PubMed
  Skomal G (2007) Evaluating the physiological and physical consequences of capture on post-release survivorship in large pelagic fishes. Fish Ecol Manage 14:81鈥?9
  Skulason S, Smith TB (1995) Resource polymorphisms in vertebrates. Trends Ecol Evol 10:366鈥?70PubMed
  Slabbekoorn H, Bouton N, van Opzeeland I, Coers A, ten Cate C, Popper AN (2010) A noisy spring: the impact of globally rising underwater sound levels on fish. Trends Ecol Evol 25:419鈥?27PubMed
  Sloman KA, Wilson RW, Balshine S (2006) Behavior and physiology fish physiology, vol 24. Academic Press, San Diego
  Smith TD (2002) A history of fisheries and their science and management. In: Hart PJB, Reynolds JD (eds) Handbook of fish biology and fisheries, vol 2. Blackwell Publishing, Oxford, pp 61鈥?3
  Sousa T, Domingos T, Poggiale J-C, Kooijman SALM (2010) Dynamic energy budget theory restores coherence in biology. Phil Trans R Soc B 365:3413鈥?428PubMed Central PubMed
  Southwood A, Fritsches K, Brill R, Swimmer Y (2008) Sound, chemical, and light detection in sea turtles and pelagic fishes: sensory-based approaches to bycatch reduction in longline fisheries. Endang Sp Res 5:225鈥?38
  Spicer JI, Gaston KJ (1999) Physiological diversity and its ecological implications. Blackwell Science, Oxford
  Sumaila UR, Cheung WWL, Lam VWY, Pauly D, Herrick S (2011) Climate change impacts on the biophysics and economics of world fisheries. Nat Clim Change 1:449鈥?56
  Suski CD, Cooke SJ, Danylchuk AJ et al (2007) Physiological disturbance and recovery dynamics of bonefish (Albula vulpes), a tropical marine fish, in response to variable exercise and exposure to air. Comp Biochem Physiol A 148:664鈥?73
  Trippel EA (1999) Estimation of stock reproductive potential: history and challenges for Canadian Atlantic Gadoid stock assessments. J NW Atl Fish Sci 25:61鈥?1
  Ulltang 脴 (1998) Explanations and predictions in fisheries science鈥損roblems and challenges in a historical and epistemological perspective. Fish Res 37:297鈥?10
  Utne-Palm AC (2002) Visual feeding of fish in a turbid environment: physical and behavioural aspects. Mar Freshw Behav Physiol 35:111鈥?28
  Videler JJ (1993) Fish swimming. Chapman and Hall, London
  Videler JJ, Weihs D (1982) Energetic advantages of burst-and-coast swimming of fish at high speeds. J Exp Biol 97:169鈥?78PubMed
  Walther GR, Post E, Convey P et al (2002) Ecological responses to recent climate change. Nature 416:389鈥?95PubMed
  Wang JH, Fisler S, Swimmer Y (2010) Developing visual deterrents to reduce sea turtle bycatch in gillnet fisheries. Mar Ecol Progr Ser 408:241鈥?50
  Ward P, Myers RA (2005) Inferring the depth distribution of catchability for pelagic fishes and correcting for variations in the depth of longline fishing gear. Can J Fish Aquat Sci 62:1130鈥?142
  Weissburg MJ, Browman HI (2005) Sensory biology: linking the internal and external ecologies of marine organisms. Mar Ecol Progr Ser 287:263鈥?65
  Wells RMG, Davie PS (1985) Oxygen binding by the blood and hematological effects of capture stress in two big gamefish: mako shark and striped marlin. Comp Biochem Physiol 81A:643鈥?46
  Welton JS, Beaumont WRC, Clarke RT (2002) The efficacy of air, sound, and bubble screens in deflecting Atlantic salmon, Salmo salar L., smolts in the River Frome UK. Fish Manage Ecol 9:11鈥?8
  West GB, Brown JH, Enquist BJ (1997) A general model for the origin of allometric scaling laws in biology. Science 276(7):122鈥?26PubMed
  Wirjoatmodo S, Pitcher TJ (1984) Flounders follow the tide to feed: evidence from ultrasonic tracking in an estuary. Est Coast Shelf Sci 19:231鈥?42
  Wood CM, Turner JD, Graham MS (1983) Why do fish die after severe exercise? J Fish Biol 22:189鈥?01
  Worm B, Hilborn R, Baum JK et al (2009) Rebuilding global fisheries. Science 325:578鈥?85PubMed
  Young JL, Bornik ZB, Marcotte ML, Charlie KN, Wagner GN, Hinch SG, Cooke SJ (2006) Integrating physiology and life history to improve fisheries management and conservation. Fish Fish 7:262鈥?83
  
• 作者单位：Andrij Z. Horodysky (1)
  Steven J. Cooke (2)
  Richard W. Brill (3) (4)
  
  1. Department of Marine and Environmental Science, Hampton University, 100 E. Queen St, Hampton, VA, 23668, USA
  2. Fish Ecology and Conservation Physiology Laboratory, Department of Biology and Institute of Environmental Science, Carleton University, 1125 Colonel By Drive, Ottawa, ON, K1S 5B6, Canada
  3. National Marine Fisheries Service, Northeast Fisheries Science Center, 166 Water Street, Woods Hole, MA, 02543, USA
  4. Virginia Institute of Marine Science, College of William & Mary, Gloucester Point, VA, 23062, USA
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Hydrobiology
  Zoology
  
• 出版者：Springer Netherlands
• ISSN：1573-5184

文摘

Behavioral responses of fishes to variability in environmental conditions and habitat quality are central to population-level demographic processes. Although field surveys can correlate abundance to habitat variables (physiochemical, biotic, and structural), they cannot provide mechanistic explanations. Moreover, field surveys are often stratified by time or geographic criteria relevant to humans, whereas fishes stratify by habitat variables relevant to them. If mechanisms underlying behavior are not explicitly understood, conclusions based on survey data can lead to biased inferences as to species-specific habitat requirements and preferences, as well as changes in stock size occurring over time. Because physiology is the transfer function that links specific environmental conditions to behavior and fitness, we argue great gains can be made through the integration of physiology and fisheries science. These are complementary disciplines, albeit ones that generally function at very different temporal and spatial scales, as well as different levels of biological organization. We argue more specifically that integrating physiological approaches with behavioral studies and traditional fisheries survey data (where each approach develops hypotheses to be tested in the other) can mechanistically link processes from cells through populations to place fisheries management in an appropriate ecosystem context. We further contend that population- and species-specific mechanistic understanding of physiological abilities and tolerances can significantly help to: improve stock assessments, describe essential fish habitat, predict rates of post-release mortality, develop effective bycatch reduction strategies, and forecast the population effects of increases in global temperatures and ocean acidification.