The ESFRI Instruct Core Centre Frankfurt: automated high-throughput crystallization suited for membrane proteins and more
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  • 作者:Yvonne Thielmann (1)
    Juergen Koepke (1)
    Hartmut Michel (1)
  • 关键词:Calorimetry ; Crystallization ; High ; throughput ; Mass spectrometry ; Membrane protein ; X ; ray diffraction
  • 刊名:Journal of Structural and Functional Genomics
  • 出版年:2012
  • 出版时间:June 2012
  • 年:2012
  • 卷:13
  • 期:2
  • 页码:63-69
  • 全文大小:286KB
  • 参考文献:1. Overington JP, Al-Lazikani B, Hopkins AL (2006) Opinion鈥攈ow many drug targets are there? Nat Rev Drug Discov 5:993鈥?96 CrossRef
    2. Deisenhofer J, Epp O, Miki K, Huber R, Michel H (1985) Structure of the protein subunits in the photosynthetic reaction center of Rhodopseudomonas-Viridis at 3A resolution. Nature 318:618鈥?24 CrossRef
    3. White SH (2004) The progress of membrane protein structure determination. Protein Sci 13:1948鈥?949 CrossRef
    4. Pogoryelov D, Krah A, Langer JD, Yildiz O, Faraldo-Gomez JD, Meier T (2010) Microscopic rotary mechanism of ion translocation in the F(0) complex of ATP synthases. Nat Chem Biol 6:891鈥?99 CrossRef
    5. Buschmann S, Warkentin E, Xie H, Langer JD, Ermler U, Michel H (2010) The structure of cbb(3) cytochrome oxidase provides insights into proton pumping. Science 329:327鈥?30 CrossRef
    6. Bruylants G, Wouters J, Michaux C (2005) Differential scanning calorimetry in life science: thermodynamics, stability, molecular recognition and application in drug design. Curr Med Chem 12:2011鈥?020 CrossRef
    7. Freyer MW, Lewis EA (2008) Isothermal titration calorimetry: experimental design, data analysis, and probing Macromolecule/Ligand binding and kinetic interactions. Biophysical Tools for Biologists: Vol 1 in Vitro Techniques, 84:79鈥?13, Elsevier, Amsterdam
    8. Niesen FH, Berglund H, Vedadi M (2007) The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability. Nat Prot 2:2212鈥?221 CrossRef
    9. Newman J (2011) One plate, two plates, a thousand plates. How crystallisation changes with large numbers of samples. Methods. doi:10.1016/j.ymeth.2011.04.004
    10. Koszelak-Rosenblum M, Krol A, Mozumdar N, Wunsch K, Ferin A, Cook E, Veatc CK, Nagel R, Luft JR, Detitta GT, Malkowski MG (2009) Determination and application of empirically derived detergent phase boundaries to effectively crystallize membrane proteins. Protein Sci 18:1828鈥?839 CrossRef
    11. Hedderich T, Marcia M, Koepke J, Michel H (2011) PICKScreens, a new database for the comparison of crystallization screens for biological macromolecules. Cryst Growth Des 11:488鈥?91 CrossRef
    12. Viola R, Walsh J, Melka A, Womack W, Murphy S, Riboldi-Tunnicliffe A, Rupp B (2011) First experiences with semi-autonomous robotic harvesting of protein crystals. J Struct Funct Genomics 12:77鈥?2 CrossRef
    13. Kim CU, Kapfer R, Gruner SM (2005) High-pressure cooling of protein crystals without cryoprotectants. Acta Cryst D61:881鈥?90
  • 作者单位:Yvonne Thielmann (1)
    Juergen Koepke (1)
    Hartmut Michel (1)

    1. Department of Molecular Membrane Biology, Max-Planck-Institute of Biophysics, Max-von-Laue Str. 3, 60438, Frankfurt, Germany
文摘
Structure determination of membrane proteins and membrane protein complexes is still a very challenging field. To facilitate the work on membrane proteins the Core Centre follows a strategy that comprises four labs of protein analytics and crystal handling, covering mass spectrometry, calorimetry, crystallization and X-ray diffraction. This general workflow is presented and a capacity of 20% of the operating time of all systems is provided to the European structural biology community within the ESFRI Instruct program. A description of the crystallization service offered at the Core Centre is given with detailed information on screening strategy, screens used and changes to adapt high throughput for membrane proteins. Our aim is to constantly develop the Core Centre towards the usage of more efficient methods. This strategy might also include the ability to automate all steps from crystallization trials to crystal screening; here we look ahead how this aim might be realized at the Core Centre.

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