Molecular tagging and marker-assisted selection of fiber quality traits using chromosome segment introgression lines (CSILs) in cotton
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  • 作者:Yuping Guo ; Xian Guo ; Fang Wang ; Ze Wei ; Suqing zhang ; Liyuan Wang…
  • 关键词:Cotton ; Chromosome segment substitution lines ; QTL mapping ; Fiber quality
  • 刊名:Euphytica
  • 出版年:2014
  • 出版时间:November 2014
  • 年:2014
  • 卷:200
  • 期:2
  • 页码:239-250
  • 全文大小:486 KB
  • 参考文献:1. Ali ML, Sanchez PL, Yu S, Lorieux M, Eizenga GC (2010) Chromosome segment substitution lines: a powerful tool for the introgression of valuable genes from / Oryza wild species into cultivated rice ( / Oryza sativa). Rice 3:218-34 CrossRef
    2. Blenda A, Fang DD, Rami JF, Garsmeur O, Luo F, Lacape JM (2012) A high density consensus genetic map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check. PLoS ONE 7:e45739. doi:10.1371/journal.pone.0045739 CrossRef
    3. Bowman DT, May OL, Calhoun DS (1996) Genetic base of upland cotton cultivars released between 1970 and 1990. Crop Sci 36:577-81 CrossRef
    4. Cao Z, Wang P, Zhu X, Chen H, Zhang T (2014) SSR marker-assisted improvement of fiber qualities in / Gossypium hirsutum using / G. barbadense introgression lines. Theor Appl Genet 127:587-94. doi:10.1007/s00122-013-2241-3 CrossRef
    5. Chen X, Guo W, Liu B, Zhang Y, Song X, Cheng Y, Zhang L, Zhang T (2012) Molecular mechanisms of fiber differential development between / G. barbadense and / G. hirsutum revealed by genetical genomics. PLoS ONE 7:e30056. doi:10.1371/journal.pone.0030056 CrossRef
    6. Clement JD, Constable GA, Stiller WN, Liu SM (2012) Negative associations still exist between yield and fibre quality in cotton breeding programs in Australia and USA. Field Crop Res 128:1- CrossRef
    7. Esbroeck GV, Bowman DT (1998) Cotton germplasm diversity and its importance to cultivar development. J Cotton Sci 2:121-29
    8. Felker GS (2001) Fiber quality and new spinning technologies. In: Dugger P, Richter DC (eds) Beltwide cotton conferences. National Cotton Council of America, Anaheim, pp 5-
    9. Feng CH (2009) Construction and evaluation of / G. barbadense cv. Pima90 CSILs in the genetic background / of G. hirsutum cv. Handan208. Dissertation, Huazhong Agricultural University, Huazhong
    10. Fu Y, Yuan DD, Hu WJ, Cai CP, Guo WZ (2013) Development of? / Gossypium barbadense?chromosome 18 segment substitution lines in the genetic standard line TM-1 of? / Gossypium hirsutum?and mapping of QTLs related to agronomic traits. Acta Agron Sin 39:21-8. doi:10.3724/SP.J.1006.2013.00021
    11. Guo WZ, Cai CP, Wang C, Zhao L, Wang L, Zhang TZ (2008) A preliminary analysis of genome structure and composition in / Gossypium hirsutum. BMC Genom 9:314. doi:10.1186/1471-2164-9-314 CrossRef
    12. Guo X, Guo Y, Ma J, Wang F, Sun M, Gui L, Zhou J, Song X, Sun X, Zhang T (2013) Mapping heterotic loci for yield and agronomic traits using chromosome segment introgression lines in cotton. J Integ Plant Biol 55:759-74 CrossRef
    13. Gutierrez OA, Basu S, Saha S, Jenkins JN, Shoemaker DB, Cheatham C, McCarty JC Jr (2002) Genetic distance among selected cotton genotypes and its relationship with F2 performance. Crop Sci 42:1841-847 CrossRef
    14. Hallahan C (1995) Data analysis using SAS. Socio Meth Res 23:373-91. doi:10.1177/0049124195023003006 CrossRef
    15. He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W (2007) QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of / Gossypium hirsutum?×? / Gossypium barbadense. Euphytica 153:181-97 CrossRef
    16. Holland J (2001) Epistasis and plant breeding. Plant Breeding Rev 21:27-2
    17. Jenkins JN, McCarty JC, Wu JX, Hayes R, Stelly D (2012) Genetic effects of nine / Gossypium barbadense L. chromosome substitution lines in top crosses with five elite Upland cotton / G. hirsutum L. cultivars. Euphytica 187:161-73 CrossRef
    18. Kohel RJ, Yu J, Park YH (2001) Molecular mapping and characterization of traits controlling fiber quality in cotton. Euphytica 121:163-72 CrossRef
    19. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugenic 12:172-75 CrossRef
    20. Lacape JM, Nguyen TB, Courtois B, Belot JL, Giband M, Gourlot JP, Gawryziak G, Roques S, Hau B (2005) QTL analysis of cotton fiber quality using multiple / Gossypium hirsutum?×? / Gossypium barbadense backcross generations. Crop Sci 45:123-40. doi:10.2135/cropsci2005.0123 CrossRef
    21. Lacape JM, Jacobs J, Arioli T, Derijcker R, Forestier-Chiron N, Llewellyn D, Jean J, Thomas E, Viot C (2009) A new interspecific, / Gossypium hirsutum?×? / G. barbadense, RIL population: towards a unified consensus linkage map of tetraploid cotton. Theor Appl Genet 119:281-92 CrossRef
    22. Lacape JM, Llewellyn D, Jacobs J, Arioli T, Becker D, Calhoun S, Al-Ghazi Y, Liu S, Palai O, Georges S, Giband M, de Assuncao H, Barroso PA, Claverie M, Gawryziak G, Jean J, Vialle M, Viot C (2010) Meta-analysis of cotton fiber quality QTLs across diverse environments in a / Gossypium hirsutum?×? / G. barbadense RIL population. BMC Plant Biol 10:132. doi:10.1186/1471-2229-10-132 CrossRef
    23. Lan M, Yang Z, Shi Y, Ge R, Li A, Zhang B, Li J, Shang H, Liu A, Wang T, Yuan Y (2011) Assessment of substitution lines and identification of QTL related to fiber yield and quality traits in BC4F2 and BC4F3 populations from / G. hirsutum?×? / G. barbadense. Sci Agric Sin 44:3086-097
    24. Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart JM (2005) Linkage map construction and mapping QTL for cotton fiber quality using SRAP, SSR and RAPD. Plant Breed 124:180-87 CrossRef
    25. McCouch SR, Cho YG, Yano M, Paul E, Blinstrub M, Morishima H, Kinoshita T (1997) Report on QTL nomenclature. Rice Genet Newslett 14:11-3
    26. McKenzie WH (1970) Fertility relationships among interspecific hybrid progenies of / Gossypium. Crop Sci 10:571-74 CrossRef
    27. Mei M, Syed NH, Gao W, Thaxton PM, Smith CW, Stelly DM, Chen ZJ (2004) Genetic mapping and QTL analysis of fiber-related traits in cotton ( / Gossypium). Theor Appl Genet 108:280-91 CrossRef
    28. Paterson AH, Brubaker CL, Wendel JF (1993) A rapid method for extraction of cotton ( / Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis. Plant Mol Biol Rep 11:122-27 CrossRef
    29. Paterson A, Boman R, Brown S, Chee P, Gannaway J, Gingle A, May O, Smith WC (2004) Reducing the genetic vulnerability of cotton. Crop Sci 44:1900-901 CrossRef
    30. Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel JF, Paterson AH (2007) Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics 176:2577-588 CrossRef
    31. Saha S, Wu J, Jenkins JN, McCarty JC, Hayes R, Stelly DM (2011) Delineation of interspecific epistasis on fiber quality traits in / Gossypium hirsutum by ADAA analysis of intermated / G. barbadense chromosome substitution lines. Theor Appl Genet 122:1351-361 CrossRef
    32. Saha S, Wu J, Jenkins JN, McCarty Stelly DM (2013) Interspecific chromosomal effects on agronomic traits in / Gossypium hirsutum by AD analysis using intermated / G. barbadense chromosome substitution lines. Theor Appl Genet 126:109-17 CrossRef
    33. Said JI, Lin Z, Zhang X, Song M, Zhang J (2013) A comprehensive meta QTL analysis for fiber quality, yield, yield related and morphological traits, drought tolerance, and disease resistance in tetraploid cotton. BMC Genom 14:776. doi:10.1186/1471-2164-14-776 CrossRef
    34. Shao Q, Zhang F, Tang S, Liu Y, Fang X, Liu D, Liu D, Zhang J, Teng Z, Paterson AH, Zhang Z (2014) Identifying QTL for fiber quality traits with three upland cotton ( / Gossypium hirsutum L.) populations. Euphytica, doi: 10.1007/s10681-014-1082-8
    35. Sharp PJ, Johnston S, Brown G, McIntosh RA, Pallotta M, Carter M, Bariana HS, Khatkar S, Lagudah ES, Singh RP, Khairallah M, Potter R, Jones MGK (2001) Validation of molecular markers for wheat breeding. Aust J Agric Res 52:1357-366. doi:10.1071/AR01052 CrossRef
    36. Song X, Wang K, Guo W, Zhang J, Zhang T (2005) A comparison of genetic maps constructed from haploid and BC1 mapping populations from the same crossing between / Gossypium hirsutum L. and / Gossypium barbadense L. Genome 48:378-90 CrossRef
    37. Stephens SG (1949) The cytogenetics of speciation in / Gossypium. I. Selective elimination of the donor parent genotype in interspecific backcrosses. Genetics 34:627-37
    38. Thomas W (2003) Prospects for molecular breeding of barley. Ann Appl Biol 142:1-2. doi:10.1111/j.1744-7348.2003.tb00223.x CrossRef
    39. Ulloa M, Meredith WR Jr (2000) Genetic linkage map and QTL analysis of agronomic and fiber quality traits in an intraspecific population. J Cotton Sci 4:161-70
    40. Van OJ, Voorrips RE (2001) JoinMap? Version 3.0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen
    41. Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77-8. doi:10.1093/jhered/93.1.77 CrossRef
    42. Wang ZW (2009) Construction and genetic evaluation of single segment substitution lines by molecular marker-assisted selection. Dissertation, Huazhong Agricultural University, Huazhong
    43. Wang F, Gong Y, Zhang C, Liu G, Wang L, Xu Z, Zhang J (2011) Genetic effects of introgression genomic components from sea island cotton ( / Gossypium barbadense L.) on fiber related traits in upland cotton ( / G. hirsutum L.). Euphytica 181:41-3 CrossRef
    44. Wang P, Zhu Y, Song X, Cao Z, Ding Y, Liu B, Zhu X, Wang S, Guo W, Zhang T (2012) Inheritance of long staple fiber quality traits of / Gossypium barbadense in / G. hirsutum background using CSILs. Theor Appl Genet 124:1415-428 CrossRef
    45. Yang C, Guo W, Li G, Gao F, Lin S, Zhang T (2008a) QTL mapping for Verticillium wilt resistance at seedling and maturity stages in / Gossypium barbadense L. Plan Sci 174:290-98 CrossRef
    46. Yang J, Hu C, Hu H, Yu R, Xia Z, Zhu J (2008b) QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics 24:721-23 CrossRef
    47. Yang Z, Li J, Li A, Zhang B, Liu G, Li J, Shi Y, Liu A, Jiang J, Wang T, Yuan Y (2009) Developing chromosome segment substitution lines (CSSLs) in, cotton ( / Gossypium) using advanced backcross and MAS. Mol Plant Breed 2:233-41
    48. Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X (2011) Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between / Gossypium hirsutum and / G. barbadense. BMC Genom 12:15. doi:10.1186/1471-2164-12-15 CrossRef
    49. Yu JZ, Kohel RJ, Fang DD, Cho J, Van Deynze A, Ulloa M, Hoffman SM, Pepper AE, Stelly DM, Jenkins JN, Saha S, Kumpatla SP, Shah MR, Hugie WV, Percy RG (2012) A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome. Genetics 2:43-8
    50. Yu J, Zhang K, Li S, Yu S, Zhai H, Wu M, Li X, Fan S, Song M, Yang D, Li Y, Zhang J (2013) Mapping quantitative trait loci for lint yield and fiber quality across environments in a / Gossypium hirsutum?×? / Gossypium barbadense backcross inbred line population. Theor Appl Genet 126:275-87 CrossRef
    51. Zhang JF, Percy RG (2007) Improving Upland cotton by introducing desirable genes from Pima cotton. World Cotton Res Conf. http://wcrc.confex.com/wcrc/2007/techprogram/P1901.HTM
    52. Zhang J, Wu YT, Guo WZ, Zhang TZ (2000) Fast screening of microsatellite markers in cotton with PAGE/silver staining. Acta Gossypii Sin 12:267-69
    53. Zhang J, Dan Y, Liang Y, Gu Y, Zhang B, Zhang B, Li J, Gong J, Liu A, Shang H, Wang T, Gong M, Yuan Y (2012) Evaluation of yield and fiber quality traits of chromosome segments substitution lines population (BC5F3 and BC5F3:4) in cotton. J Plant Genet Resour 13(9):773-81
    54. Zhu Y, Wang P, Guo W, Zhang T (2010) Mapping QTLs for lint percentage and seed index using / Gossypium barbadense chromosome segment introgression lines. Acta Agron Sin 36(8):1318-323 CrossRef
  • 作者单位:Yuping Guo (1)
    Xian Guo (1)
    Fang Wang (1)
    Ze Wei (1)
    Suqing zhang (1)
    Liyuan Wang (1)
    Yanchao Yuan (1)
    Wenguan Zeng (1)
    Guihua Zhang (2)
    Tianzhen Zhang (3)
    Xianliang Song (1)
    Xuezhen Sun (1)

    1. State Key Laboratory of Crop Biology/Agronomy College, Shandong Agricultural University, Taian, 271018, China
    2. Heze Academy of Agricultual Sciences, Heze, 274000, China
    3. National Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Research Institute, Nanjing Agricultural University, Nanjing, 210095, China
  • ISSN:1573-5060
文摘
Gossypium barbadense L is an important genetic resource to improve fiber quality of Gossypium hirsutum L., but breeders have generally encountered difficulties in introgression following whole genome crosses primarily due to genomic incompatibility, complex genetic basis and low efficiency of phenotypic evaluation and selection on fiber quality. Chromosome segment substitution lines (CSILs) are a powerful tool to dissect and introgress alien alleles while minimizing negative effects from alleles on other chromosome segments of the donor parent. In the present study, using a CSIL+F2 mapping strategy, three QTLs each for fiber length (FL), fiber strength (FS) and micronaire value (MIC) were identified on chromosome 11 and 1, explaining 6.23-0.73?% of the phenotypic variation in the F2:3 population. In addition, through marker-assisted backcrossing, the G. barbadense alleles of these QTLs were incorporated into two elite commerical Upland cotton cultivars, Lumianyan28 (L28) and Shannongmian6 (SNM6). Field evaluation indicated that 80?% of the BC2F3 lines containing the qFL-c11-1 and qFS-c11-1 from Hai7124 had significantly higher FL and FS, while only 14.5?% BC2F3 lines containing the qMIC-c1-1 in SNM6 genetic background showed significant decrease in MIC. Some BC2F3 lines with improved target fiber quality traits and without remarkable deviations in non-target lint yield components were obtained.

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