Transcriptome analysis of pigeon milk production -role of cornification and triglyceride synthesis genes

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• 作者：Meagan J Gillespie (1) (2)
  Tamsyn M Crowley (1) (3)
  Volker R Haring (1)
  Susanne L Wilson (1)
  Jennifer A Harper (1)
  Jean S Payne (1)
  Diane Green (1)
  Paul Monaghan (1)
  John A Donald (2)
  Kevin R Nicholas (3)
  Robert J Moore (1)
  
• 刊名：BMC Genomics
• 出版年：2013
• 出版时间：December 2013
• 年：2013
• 卷：14
• 期：1
• 全文大小：704KB
• 参考文献：1. Hunter J, Owen R: / Observations on certain parts of the animal economy: inclusive of several papers from the Philosophical transactions, etc. New Orleans: Haswell, Barrington, and Haswell; 1840.
  2. Litwer G: lass="a-plus-plus">Die Histologischen Ver?nderungen der Kropfwandung bei Tauben, zur Zeit der Bebrütung und Ausfütterung ihrer Jungen. / Z Zellforsch Mikrosk Anat 1926, 695-22.
  3. Weber W: lass="a-plus-plus">Zur Histologie und Cytologie der Kropfmilchbildung der Taube. / Z Zellforsch Mikrosk Anat 1962, lass="a-plus-plus">56:247-76. lass="external" href="http://dx.doi.org/10.1007/BF00325118">CrossRef
  4. Riddle O, Bates RW, Dykshorn S: lass="a-plus-plus">The preparation, identification and and assay of prolactin - a hormone of the anterior pituitary. / Am J Physiol 1933, lass="a-plus-plus">105:191-16.
  5. Dumont JN: lass="a-plus-plus">Prolactin-induced cytologic changes in the mucosa of the pigeon crop during crop- "milk" formation. / Z Zellforsch Mikrosk Anat 1965,lass="a-plus-plus">68(6)lass="a-plus-plus">:755-82. lass="external" href="http://dx.doi.org/10.1007/BF00343930">CrossRef
  6. Gillespie MJ, Haring VR, McColl KA, Monaghan P, Donald JA, Nicholas KR, Moore RJ, Crowley TM: lass="a-plus-plus">Histological and global gene expression analysis of the 'lactating' pigeon crop. / BMC Genomics 2011,lass="a-plus-plus">12(1)lass="a-plus-plus">:452. lass="external" href="http://dx.doi.org/10.1186/1471-2164-12-452">CrossRef
  7. Desmeth M, Vandeputte-Poma J: lass="a-plus-plus">Lipid composition of pigeon cropmilk—I. Total lipids and lipid classes. / Comp Biochem and Physiol Part B: Comparative Biochemistry 1980,lass="a-plus-plus">66(1)lass="a-plus-plus">:129-33. lass="external" href="http://dx.doi.org/10.1016/0305-0491(80)90094-2">CrossRef
  8. Pukac LA, Horseman ND: lass="a-plus-plus">Regulation of pigeon crop gene expression by prolactin. / Endocrinology 1984,lass="a-plus-plus">114(5)lass="a-plus-plus">:1718-724. lass="external" href="http://dx.doi.org/10.1210/endo-114-5-1718">CrossRef
  9. Pukac LA, Horseman ND: lass="a-plus-plus">Regulation of cloned prolactin-inducible genes in pigeon crop. / Mol Endocrinol 1987,lass="a-plus-plus">1(2)lass="a-plus-plus">:188-94. lass="external" href="http://dx.doi.org/10.1210/mend-1-2-188">CrossRef
  10. Horseman ND: lass="a-plus-plus">A prolactin-inducible gene product which is a member of the calpactin/lipocortin family. / Mol Endocrinol 1989,lass="a-plus-plus">3(5)lass="a-plus-plus">:773-79. lass="external" href="http://dx.doi.org/10.1210/mend-3-5-773">CrossRef
  11. Vanhoutteghem A, Londero T, Ghinea N, Djian P: lass="a-plus-plus">Serial cultivation of chicken keratinocytes, a composite cell type that accumulates lipids and synthesizes a novel beta-keratin. / Differentiation 2004,lass="a-plus-plus">72(4)lass="a-plus-plus">:123-37. lass="external" href="http://dx.doi.org/10.1111/j.1432-0436.2004.07204002.x">CrossRef
  12. Alibardi L, Toni M: lass="a-plus-plus">Localization and characterization of specific cornification proteins in avian epidermis. / Cells Tissues Organs 2004,lass="a-plus-plus">178(4)lass="a-plus-plus">:204-15. lass="external" href="http://dx.doi.org/10.1159/000083732">CrossRef
  13. Alibardi L, Toni M: lass="a-plus-plus">Immuno-cross reactivity of transglutaminase and cornification marker proteins in the epidermis of vertebrates suggests common processes of soft cornification across species. / J Exp Zool B Mol Dev Evol 2004,lass="a-plus-plus">302(6)lass="a-plus-plus">:526-49.
  14. Greenwold MJ, Sawyer RH: lass="a-plus-plus">Genomic organization and molecular phylogenies of the beta (beta) keratin multigene family in the chicken (Gallus gallus) and zebra finch (Taeniopygia guttata): implications for feather evolution. / BMC Evol Biol 2010, lass="a-plus-plus">10:148. lass="external" href="http://dx.doi.org/10.1186/1471-2148-10-148">CrossRef
  15. Zeeuwen PL: lass="a-plus-plus">Epidermal differentiation: the role of proteases and their inhibitors. / Eur J Cell Biol 2004,lass="a-plus-plus">83(11-2)lass="a-plus-plus">:761-73. lass="external" href="http://dx.doi.org/10.1078/0171-9335-00388">CrossRef
  16. Hoffner G, Vanhoutteghem A, Andre W, Djian P: lass="a-plus-plus">Transglutaminase in epidermis and neurological disease or what makes a good cross-linking substrate. / Adv Enzymol Relat Areas Mol Biol 2011, lass="a-plus-plus">78:97-60.
  17. Mischke D, Korge BP, Marenholz I, Volz A, Ziegler A: lass="a-plus-plus">Genes encoding structural proteins of epidermal cornification and S100 calcium-binding proteins form a gene complex ("epidermal differentiation complex") on human chromosome 1q21. / J Invest Dermatol 1996,lass="a-plus-plus">106(5)lass="a-plus-plus">:989-92. lass="external" href="http://dx.doi.org/10.1111/1523-1747.ep12338501">CrossRef
  18. Vanhoutteghem A, Djian P, Green H: lass="a-plus-plus">Ancient origin of the gene encoding involucrin, a precursor of the cross-linked envelope of epidermis and related epithelia. / Proc Natl Acad Sci U S A 2008,lass="a-plus-plus">105(40)lass="a-plus-plus">:15481-5486. lass="external" href="http://dx.doi.org/10.1073/pnas.0807643105">CrossRef
  19. Rudolph MC, McManaman JL, Phang T, Russell T, Kominsky DJ, Serkova NJ, Stein T, Anderson SM, Neville MC: lass="a-plus-plus">Metabolic regulation in the lactating mammary gland: a lipid synthesizing machine. / Physiol Genomics 2007,lass="a-plus-plus">28(3)lass="a-plus-plus">:323-36.
  20. Morris R, Argyris TS: lass="a-plus-plus">Epidermal cell cycle and transit times during hyperplastic growth induced by abrasion or treatment with 12-O-tetradecanoylphorbol-13-acetate. / Cancer Res 1983,lass="a-plus-plus">43(10)lass="a-plus-plus">:4935-942.
  21. Contzler R, Favre B, Huber M, Hohl D: lass="a-plus-plus">Cornulin, a new member of the "fused gene" family, is expressed during epidermal differentiation. / J Invest Dermatol 2005,lass="a-plus-plus">124(5)lass="a-plus-plus">:990-97. lass="external" href="http://dx.doi.org/10.1111/j.0022-202X.2005.23694.x">CrossRef
  22. Alibardi L, Dalla Valle L, Nardi A, Toni M: lass="a-plus-plus">Evolution of hard proteins in the sauropsid integument in relation to the cornification of skin derivatives in amniotes. / J Anat 2009,lass="a-plus-plus">214(4)lass="a-plus-plus">:560-86. lass="external" href="http://dx.doi.org/10.1111/j.1469-7580.2009.01045.x">CrossRef
  23. Fraser RD, Parry DA: lass="a-plus-plus">The structural basis of the filament-matrix texture in the avian/reptilian group of hard beta-keratins. / J Struct Biol 2011,lass="a-plus-plus">173(2)lass="a-plus-plus">:391-05. lass="external" href="http://dx.doi.org/10.1016/j.jsb.2010.09.020">CrossRef
  24. Santamaria-Kisiel L, Rintala-Dempsey AC, Shaw GS: lass="a-plus-plus">Calcium-dependent and -independent interactions of the S100 protein family. / Biochem J 2006,lass="a-plus-plus">396(2)lass="a-plus-plus">:201-14. lass="external" href="http://dx.doi.org/10.1042/BJ20060195">CrossRef
  25. Ruse M, Lambert A, Robinson N, Ryan D, Shon KJ, Eckert RL: lass="a-plus-plus">S100A7, S100A10, and S100A11 are transglutaminase substrates. / Biochemistry 2001,lass="a-plus-plus">40(10)lass="a-plus-plus">:3167-173. lass="external" href="http://dx.doi.org/10.1021/bi0019747">CrossRef
  26. Cho SY, Choi K, Jeon JH, Kim CW, Shin DM, Lee JB, Lee SE, Kim CS, Park JS, Jeong EM: lass="a-plus-plus">Differential alternative splicing of human transglutaminase 4 in benign prostate hyperplasia and prostate cancer. / Exp Mol Med 2010,lass="a-plus-plus">42(4)lass="a-plus-plus">:310-18. lass="external" href="http://dx.doi.org/10.3858/emm.2010.42.4.031">CrossRef
  27. Candi E, Oddi S, Paradisi A, Terrinoni A, Ranalli M, Teofoli P, Citro G, Scarpato S, Puddu P, Melino G: lass="a-plus-plus">Expression of transglutaminase 5 in normal and pathologic human epidermis. / J Invest Dermatol 2002,lass="a-plus-plus">119(3)lass="a-plus-plus">:670-77. lass="external" href="http://dx.doi.org/10.1046/j.1523-1747.2002.01853.x">CrossRef
  28. Eckert RL, Sturniolo MT, Broome AM, Ruse M, Rorke EA: lass="a-plus-plus">Transglutaminases in epidermis. / Prog Exp Tumor Res 2005, lass="a-plus-plus">38:115-24. lass="external" href="http://dx.doi.org/10.1159/000084236">CrossRef
  29. Robinson NA, Lapic S, Welter JF, Eckert RL: lass="a-plus-plus">S100A11, S100A10, annexin I, desmosomal proteins, small proline-rich proteins, plasminogen activator inhibitor-2, and involucrin are components of the cornified envelope of cultured human epidermal keratinocytes. / J Biol Chem 1997,lass="a-plus-plus">272(18)lass="a-plus-plus">:12035-2046. lass="external" href="http://dx.doi.org/10.1074/jbc.272.18.12035">CrossRef
  30. Shetty S, Hegde SN: lass="a-plus-plus">Changes in lipids of pigeon “milk-in the first week of its secretion. / Lipids 1991,lass="a-plus-plus">26(11)lass="a-plus-plus">:930-33. lass="external" href="http://dx.doi.org/10.1007/BF02535979">CrossRef
  31. Garrison MM, Scow RO: lass="a-plus-plus">Effect of prolactin on lipoprotein lipase in crop sac and adipose tissue of pigeons. / Am J Physiol 1975,lass="a-plus-plus">228(5)lass="a-plus-plus">:1542-544.
  32. Dils RR: lass="a-plus-plus">Comparative aspects of milk fat synthesis. / J Dairy Sci 1986,lass="a-plus-plus">69(3)lass="a-plus-plus">:904-10. lass="external" href="http://dx.doi.org/10.3168/jds.S0022-0302(86)80480-5">CrossRef
  33. Maningat PD, Sen P, Rijnkels M, Sunehag AL, Hadsell DL, Bray M, Haymond MW: lass="a-plus-plus">Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome. / Physiol Genomics 2009,lass="a-plus-plus">37(1)lass="a-plus-plus">:12-2. lass="external" href="http://dx.doi.org/10.1152/physiolgenomics.90341.2008">CrossRef
  34. Barber MC, Clegg RA, Travers MT, Vernon RG: lass="a-plus-plus">Lipid metabolism in the lactating mammary gland. / Biochim Biophys Acta 1997,lass="a-plus-plus">1347(2-)lass="a-plus-plus">:101-26.
  35. Ohno Y, Suto S, Yamanaka M, Mizutani Y, Mitsutake S, Igarashi Y, Sassa T, Kihara A: lass="a-plus-plus">ELOVL1 production of C24 acyl-CoAs is linked to C24 sphingolipid synthesis. / Proc Natl Acad Sci U S A 2010,lass="a-plus-plus">107(43)lass="a-plus-plus">:18439-8444. lass="external" href="http://dx.doi.org/10.1073/pnas.1005572107">CrossRef
  36. Rouillard JM, Zuker M, Gulari E: lass="a-plus-plus">OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. / Nucleic Acids Res 2003,lass="a-plus-plus">31(12)lass="a-plus-plus">:3057-062. lass="external" href="http://dx.doi.org/10.1093/nar/gkg426">CrossRef
  37. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: lass="a-plus-plus">Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. / Nucleic Acids Res 1997,lass="a-plus-plus">25(17)lass="a-plus-plus">:3389-402. lass="external" href="http://dx.doi.org/10.1093/nar/25.17.3389">CrossRef
  38. Zhang Z, Schwartz S, Wagner L, Miller W: lass="a-plus-plus">A greedy algorithm for aligning DNA sequences. / J Comput Biol 2000,lass="a-plus-plus">7(1-)lass="a-plus-plus">:203-14. lass="external" href="http://dx.doi.org/10.1089/10665270050081478">CrossRef
  39. Li C, Zhang G, Gilbert T, Wang T: / Genomic data from the Domestic Pigeon (Columba livia). GigaScience; 2011. lass="a-plus-plus">http://dx.doi.org/10.5524/100007
  40. Rzhetsky A, Nei M: lass="a-plus-plus">A simple method for estimating and testing minimum-evolution trees. / Mol Biol Evol 1992,lass="a-plus-plus">9(5)lass="a-plus-plus">:945.
  41. Felsenstein J: lass="a-plus-plus">Confidence limits on phylogenies: an approach using the bootstrap. / Evolution 1985,lass="a-plus-plus">39(4)lass="a-plus-plus">:783-91. lass="external" href="http://dx.doi.org/10.2307/2408678">CrossRef
  42. Jones DT, Taylor WR, Thornton JM: lass="a-plus-plus">The rapid generation of mutation data matrices from protein sequences. / Comput Appl Biosci 1992,lass="a-plus-plus">8(3)lass="a-plus-plus">:275-82.
  43. Nei M, Kumar S: / Molecular Evolution and Phylogenetics. New York: Oxford University Press; 2000.
  44. Saitou N, Nei M: lass="a-plus-plus">The neighbor-joining method: a new method for reconstructing phylogenetic trees. / Mol Biol Evol 1987,lass="a-plus-plus">4(4)lass="a-plus-plus">:406-25.
  45. Tamura K, Dudley J, Nei M, Kumar S: lass="a-plus-plus">MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. / Mol Biol Evol 2007,lass="a-plus-plus">24(8)lass="a-plus-plus">:1596-599. lass="external" href="http://dx.doi.org/10.1093/molbev/msm092">CrossRef
  46. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R: lass="a-plus-plus">Clustal W and Clustal X version 2.0. / Bioinformatics 2007,lass="a-plus-plus">23(21)lass="a-plus-plus">:2947-948. lass="external" href="http://dx.doi.org/10.1093/bioinformatics/btm404">CrossRef
  47. Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP: lass="a-plus-plus">Exploration, normalization, and summaries of high density oligonucleotide array probe level data. / Biostatistics 2003,lass="a-plus-plus">4(2)lass="a-plus-plus">:249-64. lass="external" href="http://dx.doi.org/10.1093/biostatistics/4.2.249">CrossRef
  48. Johnson WE, Li C, Rabinovic A: lass="a-plus-plus">Adjusting batch effects in microarray expression data using empirical Bayes methods. / Biostatistics 2007,lass="a-plus-plus">8(1)lass="a-plus-plus">:118-27. lass="external" href="http://dx.doi.org/10.1093/biostatistics/kxj037">CrossRef
  49. Lillie RD, Ashburn LL: lass="a-plus-plus">Supersaturated solutions of fat stains in dilute isopropanol for demonstration of acute fatty degeneration not shown by Herxheimer’s technique. / ArchsPath 1943, lass="a-plus-plus">46:432.
  
• 作者单位：Meagan J Gillespie (1) (2)
  Tamsyn M Crowley (1) (3)
  Volker R Haring (1)
  Susanne L Wilson (1)
  Jennifer A Harper (1)
  Jean S Payne (1)
  Diane Green (1)
  Paul Monaghan (1)
  John A Donald (2)
  Kevin R Nicholas (3)
  Robert J Moore (1)
  
  1. Australian Animal Health Laboratory, CSIRO Animal, Food and Health Sciences, 5 Portarlington Road, Geelong, Victoria, Australia
  2. School of Life and Environmental Sciences, Deakin University, Pigdons Road, Geelong, Victoria, 3216, Australia
  3. Centre for Chemistry and Biotechnology, Deakin University, Geelong, Victoria, 3216, Australia
  

文摘

Background The pigeon crop is specially adapted to produce milk that is fed to newly hatched young. The process of pigeon milk production begins when the germinal cell layer of the crop rapidly proliferates in response to prolactin, which results in a mass of epithelial cells that are sloughed from the crop and regurgitated to the young. We proposed that the evolution of pigeon milk built upon the ability of avian keratinocytes to accumulate intracellular neutral lipids during the cornification of the epidermis. However, this cornification process in the pigeon crop has not been characterised. Results We identified the epidermal differentiation complex in the draft pigeon genome scaffold and found that, like the chicken, it contained beta-keratin genes. These beta-keratin genes can be classified, based on sequence similarity, into several clusters including feather, scale and claw keratins. The cornified cells of the pigeon crop express several cornification-associated genes including cornulin, S100-A9 and A16-like, transglutaminase 6-like and the pigeon ‘lactating-crop-specific annexin cp35. Beta-keratins play an important role in ‘lactating-crop, with several claw and scale keratins up-regulated. Additionally, transglutaminase 5 and differential splice variants of transglutaminase 4 are up-regulated along with S100-A10. Conclusions This study of global gene expression in the crop has expanded our knowledge of pigeon milk production, in particular, the mechanism of cornification and lipid production. It is a highly specialised process that utilises the normal keratinocyte cellular processes to produce a targeted nutrient solution for the young at a very high turnover.