Consolidation of the genetic and cytogenetic maps of turbot (Scophthalmus maximus) using FISH with BAC clones
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- 作者：Xoana Taboada (1)
Jose C. Pansonato-Alves (2)
Fausto Foresti (2)
Paulino Martínez (3)
Ana Vi?as (1)
Belén G. Pardo (3)
Carmen Bouza (3) - 关键词：BAC library ; BAC ; FISH ; Genetic map ; Cytogenetic map ; Turbot
- 刊名：Chromosoma
- 出版年：2014
- 出版时间：June 2014
- 年：2014
- 卷：123
- 期：3
- 页码：281-291
- 全文大小：
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Jose C. Pansonato-Alves (2)
Fausto Foresti (2)
Paulino Martínez (3)
Ana Vi?as (1)
Belén G. Pardo (3)
Carmen Bouza (3)
1. Departamento de Genética, Facultad de Biología, CIBUS, Universidad de Santiago de Compostela, 15782, Campus Vida, Santiago de Compostela, Spain
2. Departamento de Morfologia, Universidade Estadual Paulista, Botucatu, Brazil
3. Departamento de Genética. Facultad de Veterinaria, Universidad de Santiago de Compostela, 27002, Lugo, Spain - ISSN：1432-0886
文摘
Bacterial artificial chromosomes (BAC) have been widely used for fluorescence in situ hybridization (FISH) mapping of chromosome landmarks in different organisms, including a few in teleosts. In this study, we used BAC-FISH to consolidate the previous genetic and cytogenetic maps of the turbot (Scophthalmus maximus), a commercially important pleuronectiform. The maps consisted of 24 linkage groups (LGs) but only 22 chromosomes. All turbot LGs were assigned to specific chromosomes using BAC probes obtained from a turbot 5× genomic BAC library. It consisted of 46,080 clones with inserts of at least 100?kb and <5?% empty vectors. These BAC probes contained gene-derived or anonymous markers, most of them linked to quantitative trait loci (QTL) related to productive traits. BAC clones were mapped by FISH to unique marker-specific chromosomal positions, which showed a notable concordance with previous genetic mapping data. The two metacentric pairs were cytogenetically assigned to LG2 and LG16, and the nucleolar organizer region (NOR)-bearing pair was assigned to LG15. Double-color FISH assays enabled the consolidation of the turbot genetic map into 22 linkage groups by merging LG8 with LG18 and LG21 with LG24. In this work, a first-generation probe panel of BAC clones anchored to the turbot linkage and cytogenetical map was developed. It is a useful tool for chromosome traceability in turbot, but also relevant in the context of pleuronectiform karyotypes, which often show small hardly identifiable chromosomes. This panel will also be valuable for further integrative genomics of turbot within Pleuronectiformes and teleosts, especially for fine QTL mapping for aquaculture traits, comparative genomics, and whole-genome assembly.