High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass

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• 作者：Sivan Laviad ; Alla Lapidus ; Alex Copeland ; TBK Reddy…
• 关键词：Leucobacter chironomi ; Microbacteriaceae ; Chironomid ; Chironomus ; Egg mass ; Hexavalent chromium
• 刊名：Standards in Genomic Sciences
• 出版年：2015
• 出版时间：December 2015
• 年：2015
• 卷：10
• 期：1
• 全文大小：641KB
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• 作者单位：Sivan Laviad (1)
  Alla Lapidus (2) (3)
  Alex Copeland (4)
  TBK Reddy (4)
  Marcel Huntemann (4)
  Amrita Pati (4)
  Natalia N Ivanova (4)
  Victor M Markowitz (5)
  R眉diger Pukall (6)
  Hans-Peter Klenk (6)
  Tanja Woyke (4)
  Nikos C Kyrpides (4) (7)
  Malka Halpern (1) (8)
  
  1. Dept. of Evolutionary and Environmental Biology, Faculty of Natural Sciences, University of Haifa, Haifa, Israel
  2. Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia
  3. Algorithmic Biology Lab. St. Petersburg Academic University, St. Petersburg, Russia
  4. Dept. of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA, USA
  5. Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA
  6. Leibniz Institute DSMZ 鈥?German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
  7. Dept. of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia
  8. Dept. of Biology and Environment, Faculty of Natural Sciences, University of Haifa, Oranim, Kiryat Tivon, Israel
  
• 刊物类别：Microbial Genetics and Genomics; Plant Genetics & Genomics; Animal Genetics and Genomics;
• 刊物主题：Microbial Genetics and Genomics; Plant Genetics & Genomics; Animal Genetics and Genomics;
• 出版者：BioMed Central
• ISSN：1944-3277

文摘

Leucobacter chironomi strain MM2LBT (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironomi belongs to the family Microbacteriaceae, a family within the class Actinobacteria. Strain MM2LBT was isolated from a chironomid (Diptera; Chironomidae) egg mass that was sampled from a waste stabilization pond in northern Israel. In a phylogenetic tree based on 16S rRNA gene sequences, strain MM2LBT formed a distinct branch within the radiation encompassing the genus Leucobacter. Here we describe the features of this organism, together with the complete genome sequence and annotation. The DNA GC content is 69.90%. The chromosome length is 2,964,712 bp. It encodes 2,690 proteins and 61 RNA genes. L. chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project. Keywords Leucobacter chironomi Microbacteriaceae Chironomid Chironomus Egg mass Hexavalent chromium