Mitochondrial DNA genetic polymorphism in thirteen rice cytoplasmic male sterile lines

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• 作者：Ji Luan (1)
  Tianran Liu (1)
  Weiqi Luo (1)
  Wen Liu (1)
  Minqi Peng (1)
  Wenjia Li (1)
  Xiaojun Dai (1)
  Manzhong Liang (1)
  Liangbi Chen (1)
  
• 关键词：Mitochondrial DNA ; Genetic polymorphism ; Cytoplasmic male sterile ; Rice ; Segmental sequence variation ; Single nucleotide polymorphism
• 刊名：Plant Cell Reports
• 出版年：2013
• 出版时间：April 2013
• 年：2013
• 卷：32
• 期：4
• 页码：545-554
• 全文大小：317KB
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• 作者单位：Ji Luan (1)
  Tianran Liu (1)
  Weiqi Luo (1)
  Wen Liu (1)
  Minqi Peng (1)
  Wenjia Li (1)
  Xiaojun Dai (1)
  Manzhong Liang (1)
  Liangbi Chen (1)
  
  1. Laboratory of Plant Developmental and Molecular Biology, Hunan Normal University, Changsha, 410081, Hunan, People’s Republic of China
  
• ISSN：1432-203X

文摘

Key message Thirteen rice CMS lines derived from different cytoplasms were classified into eight groups by PCR amplification on mtDNA. The orf79 gene, which causes Boro II CMS, possibly results in Dian1-CMS. Abstract Thirteen rice cytoplasmic male sterile (CMS) lines derived from different cytoplasms are widely used for hybrid rice breeding. Based on 27 loci on mitochondrial DNA, including single nucleotide polymorphisms and segmental sequence variations between typical indica and japonica as well as high-polymorphism segmental sequence variations and single nucleotide polymorphisms among rice CMS lines, the 13 rice CMS lines were classified into eight groups: (I) wild-abortive CMS, Indonesian Shuitiangu CMS, K-CMS, Gang CMS, D-CMS and dwarf abortive CMS; (II) Maxie-CMS; (III) Honglian CMS; (IV) Boro II CMS; (V) Dian1-CMS; (VI) Liao-CMS; (VII) Lead CMS; and (VIII) Chinese wild rice CMS. According to their pollen abortion phenotypes, groups I and II (including 7 CMS lines) were classified as sporophytic CMS lines, the cytoplasmic genetic relationships among which were very close. They could have originated from similar, or even the same, cytoplasm donors. Groups III–VIII (including 6 CMS lines) were categorized as gametophytic CMS lines, the cytoplasms of which differed from one another, with some having relatively far genetic relationships. Dian1-CMS was found to harbor the orf79 gene, which causes Boro II CMS, whereas Liao-CMS had an orf79 structure that does not result in Lead CMS. Therefore, we speculated that orf79 is associated with Dian1-CMS but not with Liao-CMS. The atp6-em class="a-plus-plus">orf79 structure related to sterility was also found to experience multiple evolutionary turnovers. All sporophytic CMS lines were indica-like. Except the Honglian CMS line, which was indica-like, all gametophytic CMS lines were japonica-like.