Chinese Cornus officinalis: genetic resources, genetic diversity and core collection
详细信息 查看全文
- 作者：Guishuang Li (1)
Longjin Zhang (1)
Chengke Bai (1) (2) - 关键词：Core collection ; Cornus officinalis ; Germplasm resource ; Genetic diversity ; ISSR ; LDSS
- 刊名：Genetic Resources and Crop Evolution
- 出版年：2012
- 出版时间：December 2012
- 年：2012
- 卷：59
- 期：8
- 页码：1659-1671
- 全文大小：508KB
- 参考文献：1. Arshad M, Ashraf M, Arif N (2006) Morphological variability of / Prosopis cineraria (L.) Druce, from the Cholistan desert, Pakistan. Genet Resour Crop Evol 53:1589-596 CrossRef
2. Bai CK, Wang ZZ, Zheng P, Zhang ZQ, Guan M, Liu XF (2009a) High yield and quality / C. officinalis “Shigunzao No.1-breeding and variety characteristics. J Chin Med Mat 32:1017-020
3. Bai CK, Yu JR, Yu F, Zheng P (2009b) Genetic diversity and construction of primary core germplasm in / C. officinalis by ISSR marker. Acta Botanica Boreali-Occidentalia Sinica 12:2401-407
4. Baik MC, Hoang HD, Hanmer K (1986) A checklist of the Korean cultivated plants. Kulturpflanze 34:69-44 CrossRef
5. Baranger A, Aubert G, Arnau G, Laine AL, Deniot G, Potier J, Weinachter C, Lejeune HI, Lallemand J, Burstin J (2004) Genetic diversity within / Pisum sativum using protein and PCR- based markers. Theor Appl Genet 108:1309-321 CrossRef
6. Brown AHD (1989) Core collection: a practical approach to genetic resources management. Genome 31:818-24 CrossRef
7. Brown GL, Thompson JA, Nelson RL, Warburton ML (2000) Evaluation of genetic diversity of soybean introductions and North American ancestors using RAPD and SSR markers. Crop Sci 40:815-23 CrossRef
8. Chabane JCK, Valkoun J (2004) Characterizations of genetic diversity in ICARDA core collection of cultivated barley ( / Hordeum vulgare L.). Czech J Genet Plant Breed 40:134-36
9. Chen SQ, Wang LL, Gong CR (2006) RAPD analysis on different cultivars of / C. officinalis. Chin Tradit Herb Drugs 3:43-5
10. Dai Y, Hang BQ, Huang ZL, Li PZ (1990) Effect of Fructus Corni on immune system in mice. J China Pharm Univ 4:226-28
11. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure from small quantities of fresh leaf tissues. Phytochem Bull 19:11-5
12. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13-5
13. Esayas A, Endashaw B, Tomas B (2005) Inter-simple sequence repeat (ISSR) variation in forest coffee trees ( / Coffea arabica L.) populations from Ethiopia. Genetica 124:213-21 CrossRef
14. Esselman EJ LJQ, Crawford DJ, Winduss JL, Wolfe AD (1999) Clonal diversity in the rare / Calamagrostis porteri ssp. / insperata (Poaceae): comparative results for allozymes and random amplified polymorphic DNA (RAPD) and inter simple sequence repeat (ISSR) markers. Mol Ecol 8:443-51 CrossRef
15. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-587
16. Fang WP, Hu WG (1990) Flora of China. Science Press, Beijing, pp 83-5
17. Frank O, Rotem D (1993) Random sampling from databases: a survey. Stat comput 5:25-2
18. Frankel OH (1984) Genetic perspectives of germplasm conservation. In: Arber WK, Llimensee K, Peacock WJ, Starlinger P (eds) Genetic manipulation: impact on man and society. Cambridge University Press, Cambridge, pp 161-70
19. Frankel OH, Brown AHD (1984) Plant genetic resources today: a critical appraisal. In: Hoden HW, Williams JT (eds) Crop genetic resources: conservation and evaluation. George Allen and Urwin, London, pp 249-57
20. Golkar P, Arzani A, Rezaei AM (2011) Genetic variation in safflower ( / Carthamus tinctorius L.) for seed quality-related traits and inter-simple sequence repeat (ISSR) markers. Int J Mol Sci 12:2664-677 CrossRef
21. Guan M, Bai CK, Liu J, Wang ZZ (2008a) Genetic diversity of / C. officinalis accessions based on morphological and ISSR analysis. Mol Plant Breed 5:912-20
22. Guan M, Bai CK, Wang ZZ (2008b) Study on optimization for ISSR-PCR reaction system in / C. officinalis using orthogonal design. J Shaanxi Norm Univ (Natural Science Edition) 2:80-4
23. Hanelt P and Institute of Plant Genetics and Crop Plant Research (IPK) (eds) (2001) Mansfeld’s encyclopedia of agricultural and horticultural crops, vol 3. Springer, Berlin
24. Hintum TL (1995) Core collections of plant genetic resources. Wiley, Chichester, pp 23-4
25. Hu J, Xu HM, Zhu J (2000a) A method of constructing core collection reserving special germplasm materials. J Biomath 16:348-52
26. Hu J, Xu HM, Zhu J (2000b) Constructing core collection of crop germplasm by multiple clusters based on genotypic values. J Biomath 15:103-09
27. Hu J, Zhu J, Xu HM (2000c) Methods of constructing core collections by stepwise clustering with three sampling strategies based on the genotypic values of crops. Theor Appl Genet 101:264-68 CrossRef
28. Lee KY, Sung SH, Kim SH, Jang YP, Oh TH, Kim YC (2009) Cognitive-enhancing activity of loganin isolated from / C. officinalis in scopolamine-induced amnesic mice. Archiv Pharm Res 32:677-83 CrossRef
29. Li HS, Chen GZ (2009) Genetic variation within the endangered mangrove species / Sonneratia paracaseolaris (Sonneratiaceae) in China detected by inter-simple sequence repeats analysis. Biochem Syst Ecol 4:260-65 CrossRef
30. Lu Z, Wang Y, Peng Y, Korpelainen H, Li C (2006) Genetic diversity of / Populus cathayana Rehd. populations in southwestern China revealed by ISSR markers. Plant Sci 170:407-12 CrossRef
31. Matthew WB, Lucy MD, Hector F, Buendía M, Duque C (2009) Genetic diversity seed size associations and population structure of a core collection of common beans ( / Phaseolus vulgaris L.). Theor Appl Genet 119:955-72 CrossRef
32. Nagaoka T, Ogihara Y (1997) Applicability of inter-simple sequence repeat polymorphism in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor Appl Genet 93:133-39
33. National Pharmacopoeia Committee (2005) Pharmacopoeia of People’s Republic of China. Chemical Industry Press, Beijing, p 20
34. Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD (2004) Genetic structure of the purebred domestic dog. Science 304:1160-164 CrossRef
35. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-59
36. Remington DL, Jevry MT, Matsuoka Y, Wilson LM, Whitt SR, Doebley J, Kresovich S, Goodman MM, Buckler ES (2001) Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc Natl Acad Sci 98:11479-1484 CrossRef
37. Richardson JA (1998) Wildlife utilization and biodiversity conservation in Namibia: conflicting or complementary objectives? Biodivers Conserv 7:549-59 CrossRef
38. Rohlf FJ (1998) NTSYS-PC, Numerical taxonomy and multivariate analysis system, version 2.02a. Exeter Publications, Setauket, New York
39. Rosenberg NA, Prichard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW (2002) Genetic structure of human populations. Science 298:2381-385 CrossRef
40. Roussel V, Koenig J, Bechert M, Balfouriter F (2004) Molecular diversity in French bread wheat accessions related to temporal trends and breeding programs. Theor Appl Genet 108:920-30 CrossRef
41. Shu XY, Hou DB, Ruan QP (2007) Study progress of / C. officinalis. China Pharm 16:60-2
42. Sivalingam PN, Samadia DK, Singh D, Changal HK, Khan H, Sharma SK (2011) Characterization of / Prosopis cineraria (L.) Druce germplasm with suitable horticultural traits from the hot arid region of Rajasthan, India. Genet Resour Crop Evol 58:1095-103 CrossRef
43. Volk GM, Richards CM, Reilley AA, Henk AD, Forsline PL, Aldwinckle HS (2005) / Ex situ conservation of vegetative propagated species: development of a seed-based core collection for / Malus sieversii. J Am Soc Horticult Sci 130:203-10
44. Wang JC, Hu J, Xu HM, Zhang S (2007) A strategy on constructing core collections by least distance stepwise sampling. Theor Appl Genet 115:l-
45. Xue YD, Li L, Wu GS, Zhou Y (2011) Concepts and techniques of landscape genetics. Acta Ecologica Sinica 31:1756-762
46. Yeh FC, Yang RC, Boyle TBJ, Ye ZH, Mao JX (1997) POPGENE. the User-friendly Shareware for Population Genetic Analysis, Molecular Biology and Biotechnology Center. University of Alberta, Canada
47. Ying HL, Guan RX, Liu ZX, Ma YS (2008) Genetic structure and diversity of cultivated soybean ( / Glycine max (L.) Merr.) landraces in China. Theor Appl Genet 117:857-71 CrossRef
48. Yonezawa K, Nomura T, Morishima H (1995) Sampling strategies for use in stratified germplasm collections. In: Hodgkin T, Brown AHD, Hintum TJL, van Morales EAV (eds) Core collections of plant genetic resources. Wiley, Chichester, pp 35-3
49. Zewdie Y, Tong NK, Bosland P (2004) Establishing a core collection of / Capsicum using a cluster analysis with enlightened selection of accessions. Genet Resour Crop Evol 51:147-51 CrossRef
50. Zhang GY, Wang XF, Liu SJ, Ma ZY (2004a) Cluster analysis and sampling methods for core collection construction in glandless cotton. Cotton Sci 16:8-2
51. Zhang LT, Yuan ZF, Du YF, Wang CY (2004b) Recent development and prospect of / C. officinalis. Chin Tradit Herb Drugs 8:952-55
52. Zhao WS, Zhang YQ, Li J, Hu HM, Zhao SP, Xue Z (1990) Study on the immunopharmacological effect of Japanese cornel dogwood ( / C. officinalis) components. Chin Tradit Herb Drugs 3:17-0
53. Zhou JH, Li CS, Li DD (2001) Progress in research of the active chemical components of / C. officinalis. Chin J New Drug 10:808-11
54. Zietkiewicz E, Rafalski A, Labuda D (1994) Genome finger printing by simple sequence repeat (ISSR) anchored polymerase chain reaction amplification. Genomics 20:176-83 CrossRef - 作者单位：Guishuang Li (1)
Longjin Zhang (1)
Chengke Bai (1) (2)
1. College of Life Sciences, Shaanxi Normal University, Xi’an, 710062, Shaanxi, People’s Republic of China
2. National Engineering Laboratories for Resource Developing of Endangered Chinese Crude Drugs in Northwest of China, Xi’an, 710062, Shaanxi, People’s Republic of China - ISSN：1573-5109
文摘
Cornus officinalis is plant species that is widely used in traditional Chinese medicine. To help the efficient utilization and conservation of this species, the genetic diversity of 73 germplasm resources collected from Zhejiang, Henan and Shaanxi provinces in China were used in a primary core collection. The germplasm resources were classified nine types and the analysis of morphological traits and chemical components showed wide variations among the germplasm types. The primary core collection of C. officinalis was evaluated by using 18 inter-simple sequence repeat (ISSR) markers and a mini core collection was developed based on three strategies on construction of a core germplasm resources. The ISSR results showed that a total of 233 alleles were identified in these 73 accessions, the genetic diversity (P?=?91.02%, H?=?0.293, I?=?0.446) revealed with an average of 2 alleles per locus. The genetic diversity index analysis suggested that there is a great richness and uniqueness of genetic variation in this primary core collection. Cluster analysis by UPGMA and STRUCTURE placed the 73-germplasm resources into four linkage clusters. Almost all samples from one sampling location were clustered together. Compared to the RS and SW strategy, the LDSS strategy proved to be more representative in the core collection of C. officinalis. Finally, a mini core collections by LDSS, composed of 18 accessions (24.66% of the primary core collection), let more than 94.85% of polymorphic loci remained, 97.55% of the observed number of alleles and 99.28% of the effective number of alleles of the mini core collection, respectively. The Nei’s gene diversity and Shannon’s Information index of core collection were 0.294 and 0.443, respectively. Taken all together, the results indicated that mini core collections constructed by the LDSS strategy represented their primary core collections and provided a rational framework for intensive surveys of natural variation in C. officinalis genetic resources.