Comprehensive analysis of NAC transcription factors in diploid Gossypium: sequence conservation and expression analysis uncover their roles during fiber development

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• 作者：Haihong Shang ; Zhongna Wang ; Changsong Zou ; Zhen Zhang…
• 关键词：cotton ; NAC gene family ; phylogeny ; expression patterns
• 刊名：Science China Life Sciences
• 出版年：2016
• 出版时间：February 2016
• 年：2016
• 卷：59
• 期：2
• 页码：142-153
• 全文大小：5,423 KB
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• 作者单位：Haihong Shang (1)
  Zhongna Wang (1)
  Changsong Zou (1)
  Zhen Zhang (1)
  Weijie Li (1)
  Junwen Li (1)
  Yuzhen Shi (1)
  Wankui Gong (1)
  Tingting Chen (1)
  Aiying Liu (1)
  Juwu Gong (1)
  Qun Ge (1)
  Youlu Yuan (1)
  
  1. State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China
  
• 刊物主题：Life Sciences, general;
• 出版者：Springer Berlin Heidelberg
• ISSN：1869-1889

文摘

Determining how function evolves following gene duplication is necessary for understanding gene expansion. Transcription factors (TFs) are a class of proteins that regulate gene expression by binding to specific cis-acting elements in the promoters of target genes, subsequently activating or repressing their transcription. In the present study, we systematically examined the functional diversification of the NAC transcription factor (NAC-TFs) family by analyzing their chromosomal location, structure, phylogeny, and expression pattern in Gossypium raimondii (Gr) and G. arboreum (Ga). The 145 and 141 NAC genes identified in the Gr and Ga genomes, respectively, were annotated and divided into 18 subfamilies, which showed distinct divergence in gene structure and expression patterns during fiber development. In addition, when the functional parameters were examined, clear divergence was observed within tandem clusters, which suggested that subfunctionalization had occurred among duplicate genes. The expression patterns of homologous gene pairs also changed, suggestive of the diversification of gene function during the evolution of diploid cotton. These findings provide insights into the mechanisms underlying the functional differentiation of duplicated NAC-TFs genes in two diploid cotton species. Keywords cotton NAC gene family phylogeny expression patterns