Genetic structure of wild boar (Sus scrofa) populations from East Asia based on microsatellite loci analyses
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- 作者：Sung Kyoung Choi (18)
Ji-Eun Lee (18)
Young-Jun Kim (19)
Mi-Sook Min (18)
Inna Voloshina (20)
Alexander Myslenkov (20)
Jang Geun Oh (21)
Tae-Hun Kim (22)
Nickolay Markov (23)
Ivan Seryodkin (24)
Naotaka Ishiguro (25)
Li Yu (26)
Ya-Ping Zhang (27)
Hang Lee (18)
Kyung Seok Kim (18) (28)
18. College of Veterinary Medicine ; Seoul National University ; Seoul ; Republic of Korea
19. National Institute of Ecology ; Seocheon-gun ; Chungcheongnam-do ; Republic of Korea
20. Lazovsky State Nature Reserve ; Lazo ; Primorsky Krai ; Russia
21. Research Institute for Hallasan ; Jeju Special Self-Governing Province ; Jeju ; Republic of Korea
22. Division of Animal Genomics and Bioinformatics ; National Institute of Animal Science ; Rural Development Administration ; Suwon ; Gyeonggi-do ; Republic of Korea
23. Institute of Plant and Animal Ecology Urals Branch of Russian Academy of Sciences ; Yekaterinburg ; Russia
24. Pacific Geographical Institute Far Eastern Branch of Russian Academy of Sciences ; Vladivostok ; Russia
25. Laboratory of Food and Environmental Hygiene ; Veterinary Medicine ; Gifu University ; Gifu ; Japan
26. Laboratory for Conservation and Utilization of Bio-resource and Key Laboratory for Microbial Resources of the Ministry of Education ; Yunnan University ; Kunming ; China
27. State Key Laboratory of Genetic Resources and Evolution ; Kunming Institute of Zoology ; Chinese Academy of Sciences ; Kunming ; China
28. Department of Ecology ; Evolution ; and Organismal Biology ; Iowa State University ; Ames ; IA ; USA - 关键词：Microsatellites ; East Asia ; Genetic diversity ; Genetic structure ; Wild boar
- 刊名：BMC Genetics
- 出版年：2014
- 出版时间：December 2014
- 年：2014
- 卷：15
- 期：1
- 全文大小：891 KB
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- 出版者：BioMed Central
- ISSN：1471-2156
文摘
Background Wild boar, Sus scrofa, is an extant wild ancestor of the domestic pig as an agro-economically important mammal. Wild boar has a worldwide distribution with its geographic origin in Southeast Asia, but genetic diversity and genetic structure of wild boar in East Asia are poorly understood. To characterize the pattern and amount of genetic variation and population structure of wild boar in East Asia, we genotyped and analyzed microsatellite loci for a total of 238 wild boar specimens from ten locations across six countries in East and Southeast Asia. Results Our data indicated that wild boar populations in East Asia are genetically diverse and structured, showing a significant correlation of genetic distance with geographic distance and implying a low level of gene flow at a regional scale. Bayesian-based clustering analysis was indicative of seven inferred genetic clusters in which wild boars in East Asia are geographically structured. The level of genetic diversity was relatively high in wild boars from Southeast Asia, compared with those from Northeast Asia. This gradient pattern of genetic diversity is consistent with an assumed ancestral population of wild boar in Southeast Asia. Genetic evidences from a relationship tree and structure analysis suggest that wild boar in Jeju Island, South Korea have a distinct genetic background from those in mainland Korea. Conclusions Our results reveal a diverse pattern of genetic diversity and the existence of genetic differentiation among wild boar populations inhabiting East Asia. This study highlights the potential contribution of genetic variation of wild boar to the high genetic diversity of local domestic pigs during domestication in East Asia.