Genetic diversity and population structure of the threatened freshwater catfish, Tandanus tandanus, in Victoria, Australia

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• 作者：Erin Hill (1)
  Brett A. Ingram (2)
  Meaghan Rourke (3)
  John Mitchell (1)
  Jan M. Strugnell (1)
  
  1. Department of Genetics ; La Trobe Institute for Molecular Sciences ; La Trobe University ; Melbourne ; VIC ; 3086 ; Australia
  2. Department of Environment and Primary Industries ; Alexandra ; VIC ; 3714 ; Australia
  3. Department of Primary Industries ; Narrandera Fisheries Centre ; P.O. Box 182 ; Narrandera ; NSW ; 2700 ; Australia
  
• 关键词：Catfish ; Tandanus tandanus ; Genetic diversity ; Population structure ; Conservation ; Broodstock management
• 刊名：Conservation Genetics
• 出版年：2015
• 出版时间：April 2015
• 年：2015
• 卷：16
• 期：2
• 页码：317-329
• 全文大小：1,588 KB
• 参考文献：1. Backhouse, G, Lyon, J, Cant, B (2008) National recovery plan for the Murray Hardyhead Craterocephalus fluviatilis. Department of Sustainability and Environment, Heidelberg
  2. Blacket, MJ, Robin, C, Good, RT, Lee, SF, Miller, AD (2012) Universal primers for fluorescent labelling of PCR fragments鈥攁n efficient and cost-effective approach to genotyping by fluorescence. Mol Ecol Resour 12: pp. 456-463 CrossRef
  3. Cadwallader, PL, Backhouse, GN (1983) A guide to the freshwater fish of Victoria. Victorian Government Printing Office, Melbourne
  4. Cadwallader, PL, Rogan, PL (1977) The Macquarie perch, Macquria australasica (Pisces: Percichthyidae), of Lake Eildon, Victoria. Aust J Ecol 2: pp. 409-418 CrossRef
  5. Chapuis, MP, Estoup, A (2007) Microsatellite null alleles and estimation of population differentiation. Mol Biol Evol 24: pp. 621-631 molbev/msl191" target="_blank" title="It opens in new window">CrossRef
  6. Clunie P, Koehn J (2001) Freshwater catfish: a resource document. Victoria
  R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna
  7. Cowx, IG (1994) Rehabilitation of freshwater fisheries. Fishing News Books, Oxford
  8. Crabb, P (1988) Managing the Murray鈥揇arling Basin. Aust Geogr 19: pp. 64-88 CrossRef
  9. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Heled J, Kearse M, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A (2010) GENEIOUS v5.6.4. Biomatters Ltd, Auckland
  10. Edmands, S (2007) Between a rock and a hard place: evaluating the relative risks of inbreeding and outbreeding for conservation and management. Mol Ecol 16: pp. 463-475 CrossRef
  11. Evanno, G, Regnaut, S, Goudet, J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: pp. 2611-2620 CrossRef
  12. Excoffier, L, Lischer, HE (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: pp. 564-567 CrossRef
  13. Faulks, LK, Gilligan, DM, Beheregaray, LB (2010) Evolution and maintenance of divergent lineages in an endangered freshwater fish Macquaria australasica. Conserv Genet 11: pp. 921-934 CrossRef
  14. Faulks, LK, Gilligan, DM, Beheregaray, LB (2010) Clarifying an ambiguous evolutionary history: range-wide phylogeography of an Australian freshwater fish, the golden perch (Macquaria ambigua). J Biogeogr 37: pp. 1329-1340 CrossRef
  15. Faulks, LK, Gilligan, DM, Beheregaray, LB (2010) Islands of water in a sea of dry land: hydrological regime predicts genetic diversity and dispersal in a widespread fish from Australia鈥檚 arid zone, the golden perch (Macquaria ambigua). Mol Ecol 19: pp. 4723-4737 CrossRef
  16. Faulks, LK, Gilligan, DM, Beheregaray, LB (2011) The role of anthropogenic versus natural in-stream structures in determining connectivity and genetic diversity in an endangered freshwater fish, Macquarie perch (Macquaria australasica). Evol Appl 4: pp. 589-601 CrossRef
  17. Fu, YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: pp. 915-925
  18. George, AL, Kuhajda, BR, Williams, JD, Cantrell, MA, Rakes, PL, Shute, J (2009) Guidelines for propagation and translocation for freshwater fish conservation. Fisheries 34: pp. 529-545 CrossRef
  19. Goldberg, TL, Grant, EC, Inendino, KR, Kassler, TW, Claussen, JE, Philipp, DP (2005) Increased infectious disease susceptibility resulting from outbreeding depression. Conserv Biol 19: pp. 455-462 CrossRef
  20. Goudet, J (1995) FSTAT (vers. 1.2): a computer program to calculate F-statistics. J Hered 86: pp. 485-486
  21. Hammer, MP, Unmack, PJ, Adams, M, Raadik, TA, Johnson, JB (2014) A multigene molecular assessment of cryptic biodiversity in the iconic freshwater blackfishes (Teleosti: Percichthyidae: Gadopsis) of south-eastern Australia. Biol J Linn Soc 111: pp. 521-540 CrossRef
  22. Hughes, J, Ponniah, M, Hurwood, D, Chenoweth, S, Arthington, A (1999) Strong genetic structuring in a habitat specialist, the Oxleyan Pygmy Perch Nannoperca oxleyana. Heredity 83: pp. 5-14 CrossRef
  23. Hughes, JM, Real, KM, Marshall, JC, Schmidt, DJ (2012) Extreme genetic structure in a small-bodied freshwater fish, the purple spotted gudgeon, Mogurnda adspersa (Eleotridae). PLoS One 7: pp. e40546 CrossRef
  24. Ingram, BA, Barlow, CG, Burchmore, JJ, Gooley, GJ, Rowland, SJ, Sanger, AC (1990) Threatened native freshwater fishes in Australia鈥撯€搒ome case histories. J Fish Biol 37: pp. 175-182 CrossRef
  25. Ingram, BA, Hayes, B, Rourke, ML (2011) Impacts of stock enhancement strategies on the effective population size of Murray cod Maccullochella peelii, a threatened Australian fish. Fish Manag Ecol 18: pp. 467-481 CrossRef
  26. Jerry, DR (2008) Phylogeography of the freshwater catfish Tandanus tandanus (Plotosidae): a model species to understand evolution of the eastern Australian freshwater fish fauna. Mar Freshw Res 59: pp. 351-360 CrossRef
  27. Jerry, DR, Woodland, DJ (1997) Electrophoretic evidence for the presence of the undescribed 鈥楤ellinger鈥檆atfish (Tandanus sp.) (Teleostei: Plotosidae) in four New South Wales mid-northern coastal rivers. Mar Freshw Res 48: pp. 235-240 CrossRef
  28. Jombart, T (2008) Adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 24: pp. 1403-1405 matics/btn129" target="_blank" title="It opens in new window">CrossRef
  29. Jombart, T, Ahmed, I (2011) Adegenet 1.3鈥?: new tools for the analysis of genome-wide SNP data. Bioinformatics 27: pp. 3070-3071 matics/btr521" target="_blank" title="It opens in new window">CrossRef
  30. Koehn, JD, Harrington, DJ (2006) Environmental conditions and timing for the spawning of Murray cod (Maccullochella peelii peelii) and the endangered trout cod (M. macquariensis) in southeastern Australian rivers. River Res Appl 22: pp. 327-342 CrossRef
  31. Koehn, JD, Lintermans, M (2012) A strategy to rehabilitate fishes of the Murray鈥揇arling Basin, south-eastern Australia. Endanger Species Res 16: pp. 165-181 CrossRef
  32. Lee, WJ, Conroy, J, Howell, WH, Kocher, TD (1995) Structure and evolution of teleost mitochondrial control regions. J Mol Evol 41: pp. 54-66 CrossRef
  33. Leigh J, Bryant D, Steel M (2013) PopART (Population Analysis with Reticulate Trees). ml" class="a-plus-plus">http://www.popart.otago.ac.nz/downloads.shtml. Accessed 1 October 2013
  34. Lintermans, M (2009) Fishes of the Murray鈥揇arling Basin: an introductory guide. Murray鈥揇arling Basin Authority, Canberra
  35. Mallen-Cooper M (1993) Habitat changes and declines of freshwater fish in Australia: what is the evidence and do we need more. In: Proceedings of the sustainable fisheries through sustaining fish habitats: 118鈥?23
  36. Musyl, MK, Keenan, CP (1996) Evidence for cryptic speciation in Australian freshwater eel-tailed catfish, Tandanus tandanus (Teleostei: Plotosidae). Copeia 3: pp. 526-534 CrossRef
  37. Peakall, ROD, Smouse, PE (2006) GENALEX 6: genetic analysis in Excel: population genetic software for teaching and research. Mol Ecol Notes 6: pp. 288-295 CrossRef
  38. Piry, S, Luikart, G, Cornuet, JM (1999) BOTTLENECK: a computer program for detecting recent reductions in the effective size using allele frequency data. J Hered 90: pp. 502-503 CrossRef
  39. Pollard, D, Ingram, B, Harris, J, Reynolds, L (1990) Threatened fishes in Australia鈥揳n overview. J Fish Biol 37: pp. 67-78 CrossRef
  40. Pritchard, JK, Stephens, M, Donnelly, P (2000) Inference of population structure using multilocus genotype data. Genetics 155: pp. 945-959
  41. Raymond, M, Rousset, F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered 86: pp. 248-249
  42. Roni P (2005). Habitat rehabilitation for inland fisheries: global review of effectiveness and guidance for rehabilitation of freshwater ecosystems. FAO Fisheries Technical Paper 484. Food and Agriculture Organisation, Rome
  43. Rourke M, Clunie P (2010) Provision of advice to guide the design of a genetically sound breeding and stocking program for freshwater catfish for conservation and recreational fishing in Victoria [unpublished observation]
  44. Rourke M, Gilligan D (2010) Population genetic structure of freshwater catfish ( / Tandanus tandanus) in the Murray鈥揇arling Basin and coastal catchments of New South Wales: implications for future re-stocking programs. IAI NSW, Narrandera http://www.dpi.nsw.gov.au/__data/assets/pdf_file/0003/352974/AE_2010_Output-1687_Rourke_Catfish-Genetics-Final-No-123_REPORT.pdf
  45. Rourke, ML, Teske, PR, Attard, CR, Gilligan, DM, Beheregaray, LB (2010) Isolation and characterisation of microsatellite loci in the Australian freshwater catfish (Tandanus tandanus). Conserv Genet Resour 2: pp. 245-248 CrossRef
  46. Rozas, LP, Rozas, J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: pp. 1451-1452 matics/btp187" target="_blank" title="It opens in new window">CrossRef
  47. Hill E, Ingram BA, Duncan ML, Mitchell RJ, Strugnell, JM (2014) Managing genetic viability of freshwater catfish in Victoria. Department of Primary Industries Victoria. Australia. Recreation Fishing Grants Program Research Report (in Press)
  48. Tajima, F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: pp. 585-595
  49. Tallmon, DA, Luikart, G, Waples, RS (2004) The alluring simplicity and complex reality of genetic rescue. Trends Ecol Evol 19: pp. 489-496 CrossRef
  50. Taniguchi, N (2003) Genetic factors in broodstock management for seed production. Rev Fish Biol Fish 13: pp. 177-185 CrossRef
  51. Tessier, N, Bernatchez, L, Presa, P, Angers, B (1995) Gene diversity analysis of mitochondrial DNA, microsatellites and allozymes in landlocked Atlantic salmon. J Fish Biol 47: pp. 156-163 CrossRef
  52. Van-Oosterhout, C, Hutchinson, WF, Wills, DP, Shipley, P (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: pp. 535-538 CrossRef
  53. Weatherley, AH (1967) Australian inland waters and their fauna: eleven studies. Australian National University Press, Canberra
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Biomedicine
  Human Genetics
  Animal Anatomy, Morphology and Histology
  Plant Sciences
  Evolutionary Biology
  
• 出版者：Springer Netherlands
• ISSN：1572-9737

文摘

In Australia, many species of freshwater fish have rapidly declined following European settlement in the late eighteenth century. The freshwater catfish (Tandanus tandanus) is listed as threatened in Victoria and accordingly, broodstock management and a captive breeding program to facilitate the reintroduction of hatchery bred fish into depleted populations have been suggested. Little work has been conducted on Victorian populations of T. tandanus, despite its threatened status. This study assessed the genetic diversity and genetic structure of T. tandanus in Victoria, using mitochondrial and microsatellite markers. Genetic diversity of T. tandanus in Victoria varied greatly between sites, with the Mallee containing the highest diversity at both markers. Sites where T. tandanus had been introduced in the past typically contained lower measures of genetic diversity, with the exception of the Wimmera site for microsatellite markers. Populations could be assigned to one of four broodfish zones in Victoria, based on levels of genetic differentiation; (1) Mallee, Little Murray, Wimmera, Gum Lagoon and Safe Lagoon; (2) Loddon and Avoca; (3) Turners Lagoon and Phyland Lagoon; and (4) Goulburn. These results will assist managers with implementing broodstock management and a captive breeding program by identifying which sites should be sourced for broodstock and where to reintroduce their progeny, without compromising genetic variation or structure in T. tandanus populations in Victoria.