Enteractinococcus lamae sp. nov. and Enteractinococcus viverrae sp. nov., isolated from animal faeces
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  • 作者:Xiu Chen ; Gui-Ding Li ; Qin-Yuan Li ; Cai-Juan Hu ; Shu-Mei Qiu…
  • 关键词:Enteractinococcus lamae sp. nov. ; Enteractinococcus viverrae sp. nov. ; 16S rRNA
  • 刊名:Antonie van Leeuwenhoek
  • 出版年:2015
  • 出版时间:December 2015
  • 年:2015
  • 卷:108
  • 期:6
  • 页码:1477-1483
  • 全文大小:398 KB
  • 参考文献:Cao YR, Jiang Y, Jin RX, Han L, He WX, Li YL, Huang XS, Xue QH (2012) Enteractinococcus coprophilus gen. nov., sp. nov., of the family Micrococcaceae, isolated from Panthera tigris amoyensis faeces, and transfer of Yaniella fodinae Dhanjal, et al. 2011 to the genus Enteractinococcus as Enteractinococcus fodinae comb. nov. Int J Syst Evol Microbiol 62:2710-716PubMedCentral CrossRef PubMed
    Cerny G (1978) Studies on aminopeptidase for the distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5:113-22CrossRef
    Christensen H, Angen O, Mutters R, Olsen JE, Bisgaard M (2000) DNA–DNA hybridization determined in microwells using covalent attachment of DNA. Int J Syst Evol Microbiol 50:1095-102CrossRef PubMed
    Cui XL, Mao PH, Zeng M, Li WJ, Zhang LP, Xu LH, Jiang CL (2001) Streptomonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51:357-63CrossRef PubMed
    Dhanjal S, Ruckmani A, Cameotra SS, Pukall R, Klenk HP, Mayilraj S (2011) Yaniella fodinae sp. nov., a novel member of the genus Yaniella isolated from coal mine. Int J Syst Evol Microbiol 61:535-39CrossRef PubMed
    Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224-29CrossRef
    Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-79CrossRef PubMed
    Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-91CrossRef
    Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-16CrossRef
    He L, Li W, Huang Y, Wang LM, Liu ZH, Lanoot BJ, Vancanneyt M, Swings J (2005) Streptomyces jietaisiensis sp. nov., isolated from soil in northern China. Int J Syst Evol Microbiol 55:1939-944CrossRef PubMed
    Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH & other authors (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716-21
    Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-20CrossRef PubMed
    Kroppenstedt RM (1982) Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5:2359-367CrossRef
    Leifson E (1960) Atlas of Bacterial Flagellation. Academic Press, LondonCrossRef
    Li WJ, Xu P, Schumann P, Zhang YQ, Pukall R, Xu LH, Stackebrandt E, Jiang CL (2007) Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57:1424-428CrossRef PubMed
    Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-67CrossRef
    Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-41CrossRef
    Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4:406-25PubMed
    Schleifer KH, Kandler O (1972) Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407-77PubMedCentral PubMed
    Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725-729PubMedCentral CrossRef PubMed
    Tang SK, Wang Y, Chen Y, Lou K, Cao LL, Xu LH, Li WJ (2009) Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella. Int J Syst Evol Microbiol 59:2025-032CrossRef PubMed
    Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-882PubMedCentral CrossRef PubMed
    Tindall BJ, Sikorski J, Smibert RA, Krieg NR (2007) Phenotypic characterization and the principles of comparative systematics. In: Reddy CA, Beveridge TJ, Breznak JA, Marzluf GA, Schmidt TM, Snyder LR (eds) Methods for general and molecular microbiology. American Society for Microbiology, Washington DC, pp 330-93
    Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Trüper HG (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial s
  • 作者单位:Xiu Chen (1)
    Gui-Ding Li (2)
    Qin-Yuan Li (2)
    Cai-Juan Hu (1)
    Shu-Mei Qiu (3)
    Yi Jiang (2)
    Cheng-Lin Jiang (2)
    Li Han (1)
    Xue-Shi Huang (1)

    1. Institute of Microbial Pharmaceuticals, College of Life and Health Sciences, Northeastern University, Shenyang, 110819, People’s Republic of China
    2. Yunnan Institute of Microbiology, Yunnan University, Kunming, 650091, People’s Republic of China
    3. Yunnan Wild Animal Park, Kunming, 650218, People’s Republic of China
  • 刊物类别:Biomedical and Life Sciences
  • 刊物主题:Life Sciences
    Microbiology
    Medical Microbiology
    Plant Sciences
    Soil Science and Conservation
  • 出版者:Springer Netherlands
  • ISSN:1572-9699
文摘
Two novel actinobacteria, designated strains YIM 101617T and YIM 101632T, were isolated from Lama pacos (alpaca) and Viverra zibetha (civet) faeces in Yunnan Wild Animal Park in Yunnan province, southwestern China. Both strains should be placed in genus Enteractinococcus based on phylogenetic analysis. Based on 16S rRNA gene sequence analysis, strain YIM 101617T exhibits high similarity to Enteractinococcus fodinae DSM 22966T (97.70 %) and Enteractinococcus coprophilus YIM 100590T (97.45 %), whilst YIM 101632T exhibits high similarity to Enteractinococcus coprophilus YIM 100590T (97.25 %), and the similarity between YIM 101617T and YIM 101632T is 95.90 %. However, DNA–DNA hybridization values of the two strains with the type strains in the genus Enteractinococcus were low (<70 %). Most morphological and chemotaxonomic characteristics of the two strains were found to be similar to those of species in the genus Enteractinococcus but also some differences were observed. The DNA G+C contents of strains YIM 101617T and YIM 101632T were determined to be 55.9 and 56.4 mol%, respectively. Based on these data, the two strains are concluded to represent two different novel species in the genus Enteractinococcus. The names Enteractinococcus lamae sp. nov. (type strain YIM 101617T=DSM 27612T=CCTCC AB 2013230T) and Enteractinococcus viverrae sp. nov. (type strain YIM 101632T=KCTC 39552T=CCTCC AB 2013280T) are proposed, respectively. Keywords Enteractinococcus lamae sp. nov. Enteractinococcus viverrae sp. nov. 16S rRNA

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