Lampropedia puyangensis sp. nov., isolated from symptomatic bark of Populus?×?euramericana canker and emended description of Lampropedia?hyalina?(Ehrenberg 1832) Lee et al. 2004
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  • 作者:Yong Li ; Tao Wang ; Chun-gen Piao ; Lai-fa Wang ; Guo-zhong Tian…
  • 关键词:Lampropedia puyangensis ; Polyphasic taxonomy ; DNA–DNA hybridization ; Chemotaxonomic analysis
  • 刊名:Antonie van Leeuwenhoek
  • 出版年:2015
  • 出版时间:August 2015
  • 年:2015
  • 卷:108
  • 期:2
  • 页码:321-328
  • 全文大小:715 KB
  • 参考文献:Austin JW, Murray RG (1990) Isolation and in vitro assembly of the components of the outer S layer of Lampropedia hyalina. J Bacteriol 172:3681-689PubMed Central PubMed
    De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133-42PubMed View Article
    Del Sal G, Manfioletti G, Schneider C (1989) The?CTAB-DNA?precipitation method: a common mini-scale preparation of template?DNA?from phagemids, phages or plasmids suitable for sequencing. Biotechniques 7:514-20PubMed
    Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-91View Article
    Forbes L (1981) Rapid flagella stain. J Clin Microbiol 13:807-09PubMed Central PubMed
    Jenkins D, Richard MG, Daigger GT (1986) Manual on the causes and control of activated sludge bulking and foaming. Water Research Commission
    Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH et al (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716-21PubMed View Article
    Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Chichester, Wiley, pp 115-75
    Lee N, Cellamare CM, Bastianutti C, Rosselló-Mora R, K?mpfer P, Ludwig W, Schleifer K, Stante L (2004) Emended description of the species Lampropedia hyalina. Int J Syst Evol Microbiol 54:1709-715PubMed View Article
    Li Y, Piao CG, Ma YC, He W et al (2013) Acinetobacter puyangensis sp. nov., isolated from the healthy and diseased part of Populus?×?euramericana canker bark. Int J Syst Evol Microbiol 63:2963-969PubMed View Article
    Li Y, He W, Ren FJ, Guo LM et al (2014a) A canker disease of Populus?×?euramericana in China, caused by Lonsdalea quercina subsp. populi. Plant Dis 98:368-78View Article
    Li Y, He W, Wang T, Piao CG et al (2014b) Acinetobacter qingfengensis sp. nov., isolated from Populus?×?euramericana canker bark. Int J Syst Evol Microbiol 64:3417-421View Article
    Li Y, Fang W, Xue H, Liang WX, Wang LF, Tian Z.G et al (2014c) Brenneria populi sp. nov., isolated from symptomatic bark of Populus?×?euramericana canker. Int J Syst Evol Microbiol Nov 10. doi:10.-099/?ijs.-.-66068-0
    Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208-18View Article
    Marmur J, Doty P (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109-18PubMed View Article
    Minnikin DE, O’Donnell AG, Goodfellow M et al (1984) An integrated procedure for the extraction of isoprenoid quinones and polar lipids. J Microbiol Metheods 2:233-41View Article
    Murray RGE (1984) Genus Lampropedia Schoreter 1886, 151AL. In: NR Krieg, JG Holt (eds) Bergey’s Manual of Systematic Bacteriology. Baltimore: Williams & Wilkins, vol. 1, pp 402-06
    Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Inc, Newark
    Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Manual of methods for general and bacteriology. American Society for Microbiology, Washington DC, pp 607-54
    Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-739PubMed Central PubMed View Article
    Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-882PubMed Central PubMed View Article
    Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH et al (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-64View Article
    Willems A, De Ley J, Gillis M, Kersters K (1991) Comamonadaceae, a new family encompassing the acidovorans rRNA complex, including Variovorax paradoxus gen. nov., comb. nov., for Alcaligenes paradoxus (Davis) 1969. Int J Syst Bacteriol 41:445-50View Article
    Xie CH, Yokota A (2003) Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA sequence. J Gen Appl Microbiol 49:345-49PubMed View Article
  • 作者单位:Yong Li (1)
    Tao Wang (1) (2)
    Chun-gen Piao (1)
    Lai-fa Wang (1)
    Guo-zhong Tian (1)
    Tian-hui Zhu (2)
    Min-wei Guo (1)

    1. The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, 100091, China
    2. College of Forestry, Sichuan Agricultural University, Ya’an, 625014, China
  • 刊物类别:Biomedical and Life Sciences
  • 刊物主题:Life Sciences
    Microbiology
    Medical Microbiology
    Plant Sciences
    Soil Science and Conservation
  • 出版者:Springer Netherlands
  • ISSN:1572-9699
文摘
A Gram-stain negative, Neisser-stain negative, aerobic, non-motile, non-spore-forming, slimy, glossy bacterial strain with single or clustered coccoid cells and white colony colour, designated as 2-binT, was isolated from cankered bark tissue of Populus?×?euramericana. The strain was found to grow at 15-0?°C and pH 5-0, with an optimum of 30?°C and pH 8.0. The strain was found to be negative with respect to catalase and positive for oxidase activity, nitrate reduction and Voges–Proskauer reaction. Analysis of 16S rRNA gene sequence data indicated that the isolate belongs to the genus Lampropedia, having sequence similarity of 96.24?% with Lampropedia hyalina ATCC11041T. DNA–DNA relatedness of strain 2-binT with L. hyalina JCM 21380T was 26.7?±?4.6?%. The DNA G+C content of strain 2-binT was determined to be 57?% and the major cellular fatty acids were identified as C16:0, C16:1 ω7c/C16:1 ω6c and C18:1 ω7c. The polar lipid profile of strain 2-binT was found to contain diphosphatidylglycerol, a glycolipid, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, a phospholipid, phosphatidylmonomethylethanolamine and three unidentified lipids (L1, L2, L3). Based on molecular data and physiological and biochemical characteristics, strain 2-binT is considered to represent a novel species in the genus Lampropedia, for which the name Lampropedia puyangensis sp. nov. is proposed. The type strain is 2-binT (=?CFCC 10925T?=?KCTC 32235T).

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