M-AMBI revisited: looking inside a widely-used benthic index
详细信息    查看全文
  • 作者:Marco Sigovini (1)
    Erica Keppel (1)
    Davide Tagliapietra (1)
  • 关键词:Biotic index ; Diversity ; Macrozoobenthos ; Multimetric index ; Open source ; Water Framework Directive
  • 刊名:Hydrobiologia
  • 出版年:2013
  • 出版时间:October 2013
  • 年:2013
  • 卷:717
  • 期:1
  • 页码:41-50
  • 全文大小:349KB
  • 参考文献:1. Armstrong, J. S., 1967. Derivation of theory by means of factor analysis or Tom Swift and his magic factor analysis machine. The American Statistician 21: 17鈥?1.
    2. Bakalem, A., T. Ruellet & J. C. Dauvin, 2009. Benthic indices and ecological quality of shallow Algeria fine sand community. Ecological Indicators 9: 395鈥?08. CrossRef
    3. Bald, J., 脕. Borja, I. Muxika, J. Franco & V. Valencia, 2005. Assessing reference conditions and physico-chemical status according to the European Water Framework Directive: a case-study from the Basque Country (Northern Spain). Marine Pollution Bulletin 50: 1508鈥?522. marpolbul.2005.06.019">CrossRef
    4. Borja, 脕. & I. Muxika, 2005. Guidelines for the use of AMBI (AZTI鈥檚 Marine Biotic Index) in the assessment of the benthic ecological quality. Marine Pollution Bulletin 50: 787鈥?89. marpolbul.2005.04.040">CrossRef
    5. Borja, 脕. & B. G. Tunberg, 2011. Assessing benthic health in stressed subtropical estuaries, eastern Florida, USA using AMBI and M-AMBI. Ecological Indicators 11: 295鈥?03. CrossRef
    6. Borja, 脕., J. Franco & V. P茅rez, 2000. A marine biotic index to establish the ecological quality of soft-bottom benthos within European estuarine and coastal environments. Marine Pollution Bulletin 40: 1100鈥?114. CrossRef
    7. Borja, 脕., J. Franco, V. Valencia, J. Bald, I. Muxika, M. J. Belzunce & O. Solaun, 2004. Implementation of the European water framework directive from the Basque country (northern Spain): a methodological approach. Marine Pollution Bulletin 48: 209鈥?18. marpolbul.2003.12.001">CrossRef
    8. Borja, 脕., D. M. Dauer, R. D铆az, R. J. Llans贸, I. Muxika, J. G. Rodr铆guez & L. Schaffner, 2008a. Assessing estuarine benthic quality conditions in Chesapeake Bay: a comparison of three indices. Ecological Indicators 8: 395鈥?03. CrossRef
    9. Borja, 脕., J. Mader, I. Muxika, J. Germ谩n Rodr铆guez & J. Bald, 2008b. Using M-AMBI in assessing benthic quality within the Water Framework Directive: some remarks and recommendations. Marine Pollution Bulletin 56: 1377鈥?379. marpolbul.2007.12.003">CrossRef
    10. Borja, 脕., I. Galparsoro, X. Irigoien, A. Iriondo, I. Menchaca, I. Muxika, M. Pascual, I. Quincoces, M. Revilla, J. G. Rodr铆guez, M. Santurt煤n, O. Solaun, A. Uriarte, V. Valencia & I. Zorita, 2011. Implementation of the European Marine Strategy Framework Directive: a methodological approach for the assessment of environmental status, from the Basque Country (Bay of Biscay). Marine Pollution Bulletin 62: 889鈥?04. marpolbul.2011.03.031">CrossRef
    11. Borja, 脕., D. M. Dauer & A. Gr茅marec, 2012a. The importance of setting targets and reference conditions in assessing marine ecosystem quality. Ecological Indicators 12: 1鈥?. CrossRef
    12. Borja, 脕., J. Mader & I. Muxika, 2012b. Instructions for the use of the AMBI index software (version 5.0). Revista de Investigaci贸n Marina, AZTI-Tecnalia 19: 71鈥?2.
    13. Bulmer, M. G., 1974. On fitting the Poisson lognormal distribution to species-abundance data. Biometrics 30: 101鈥?10. CrossRef
    14. Carletti, A. & A.-S. Heiskanen (eds), 2009. Water Framework Directive Intercalibration Technical Report. Part 3: Coastal and Transitional Waters. EUR 23838 EN/3.
    15. Chainho, P., J. L. Costa, M. L. Chaves, D. M. Dauer & M. J. Costa, 2007. Influence of seasonal variability in benthic invertebrate community structure on the use of biotic indices to assess the ecological status of a Portuguese estuary. Marine Pollution Bulletin 54: 1586鈥?597. marpolbul.2007.06.009">CrossRef
    16. Clarke, K. R. & R. N. Gorley, 2006. PRIMER v6: User Manual/Tutorial. PRIMER-E, Plymouth.
    17. Costa-Dias, S., R. Sousa & C. Antunes, 2010. Ecological quality assessment of the lower Lima Estuary. Marine Pollution Bulletin 61: 234鈥?39. marpolbul.2010.02.019">CrossRef
    18. Dauvin, J. C. & T. Ruellet, 2007. Polychaete/amphipod ratio revisited. Marine Pollution Bulletin 55: 215鈥?24. marpolbul.2006.08.045">CrossRef
    19. European Community, 2000. Directive 2000/60/EC of the European Parliament and of the Council of 23 October 2000 Establishing a Framework for Community Action in the Field of Water Policy. Official Journal of the European Communities L327, Bruxelles.
    20. European Community, 2008. Directive 2008/56/EC of the European Parliament and of the Council of 17 June 2008 Establishing a Framework for Community Action in the Field of Marine Environmental Policy (Marine Strategy Framework Directive). Official Journal of the European Union L164, Bruxelles.
    21. Gl茅marec, M. & C. Hily, 1981. Perturbations apport茅es 脿 la macrofaune benthique de la baie de Concarneau par les effluents urbains et portuaires. Acta Oecologica, Oecologia Applicata 2: 139鈥?50.
    22. Grall, J. & M. Gl茅marec, 1997. Using biotic indices to estimate macrobenthic community perturbations in the Bay of Brest. Estuarine, Coastal and Shelf Science 44(Suppl. A): 43鈥?3. CrossRef
    23. Grall, J. & M. Gl茅marec, 2003. L鈥檌ndice d鈥櫭﹙aluation de l鈥檈ndofaune c么ti猫re. In Alzieu, C. (ed.), Bio茅valuation de la qualit茅 environnementale des s茅diments portuaires et des zones d鈥檌mmersion. Edition IFREMER: 51鈥?5.
    24. Gray, J. S., K. R. Clarke, R. M. Warwick & G. Hobbs, 1990. Detection of initial effects of pollution on marine benthos: an example from the Ekofisk and Eldfisk oilfields, North Sea. Marine Ecology Progress Series 66: 285鈥?99. meps066285">CrossRef
    25. Grice, J. W., 2001. Computing and evaluating factor scores. Psychological Methods 6: 430鈥?50. CrossRef
    26. Gr酶tan, V. & S. Engen, 2008. poilog: Poisson Lognormal and Bivariate Poisson Lognormal Distribution. R package version 0.4.
    27. Hair, J. F. Jr., R. E. Anderson, R. L. Tatham & W. C. Black, 1998. Multivariate Data Analysis, 5th ed. Prentice Hall, Upper Saddle River, NJ.
    28. Harman, H. H., 1976. Modern Factor Analysis, 3rd ed. revised. University of Chicago Press, Chicago.
    29. Hatton-Ellis, T., 2008. The Hitchhiker鈥檚 Guide to the Water Framework Directive. Aquatic Conservation: Marine and Freshwater Ecosystems 18: 111鈥?16. CrossRef
    30. Henson, R. K. & J. K. Roberts, 2006. Use of exploratory factor analysis in published research: common errors and some comment on improved practice. Educational and Psychological Measurement 66: 393鈥?16. CrossRef
    31. Kaiser, H. F., 1958. The Varimax criterion for analytic rotation in factor analysis. Psychometrika 23: 187鈥?00. CrossRef
    32. Lasserre, P. & A. Marzollo (eds), 2000. The Venice Lagoon Ecosystem: Inputs and Interactions Between Land and Sea. MAB series 25, UNESCO and The Parthenon Publishing Group, Paris, New York, Carnforth.
    33. Margalef, R., 1958. Information theory in ecology. General Systems Bulletin 3: 36鈥?1.
    34. Mulaik, S. A., 1972. The Foundations of Factor Analysis. McGraw-Hill, New York.
    35. Munari, C. & M. Mistri, 2010. Towards the application of the Water Framework Directive in Italy: assessing the potential of benthic tools in Adriatic coastal transitional ecosystems. Marine Pollution Bulletin 60: 1040鈥?050. marpolbul.2010.01.022">CrossRef
    36. Muxika, I., 脕. Borja & W. Bonne, 2005. The suitability of the marine biotic index (AMBI) to new impact sources along European coasts. Ecological Indicators 5: 19鈥?1. CrossRef
    37. Muxika, I., 脕. Borja & J. Bald, 2007. Using historical data, expert judgement and multivariate analysis in assessing reference conditions and benthic ecological status, according to the European Water Framework Directive. Marine Pollution Bulletin 55: 16鈥?9. marpolbul.2006.05.025">CrossRef
    38. Pearson, T. & R. Rosenberg, 1978. Macrobenthic succession in relation to organic enrichment and pollution of the marine environment. Oceanography and Marine Biology Annual Review 16: 229鈥?11.
    39. Preacher, K. J. & R. C. MacCallum, 2003. Repairing Tom Swift鈥檚 electric factor analysis machine. Understanding Statistics 2: 13鈥?3. CrossRef
    40. R Development Core Team, 2012. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria, http://www.R-project.org (Accessed on 1/10/2012).
    41. Revelle, W., 2012. psych: Procedures for Personality and Psychological Research. Northwestern University, Evanston. R package version 1.2.1.
    42. Riba, I., J. M. Forja, A. G贸mez-Parra & T. 脕. DelValls, 2004. Sediment quality in littoral regions of the Gulf of C谩diz: a triad approach to address the influence of mining activities. Environmental Pollution 132: 341鈥?53. CrossRef
    43. Rosenberg, R., M. Blomqvist, H. C. Nilsson & A. Dimming, 2004. Marine quality assessment by use of benthic species abundance distributions: a proposed new protocol within the European Union Water Framework Directive. Marine Pollution Bulletin 49: 728鈥?39. marpolbul.2004.05.013">CrossRef
    44. Ruellet, T. & J. C. Dauvin, 2008. Comments on Muxika et al. 鈥淯sing historical data, expert judgement and multivariate analysis in assessing reference conditions and benthic ecological status, according to the European Water Framework Directive鈥?[Marine Pollution Bulletin 55 (2007): 16鈥?9]. Marine Pollution Bulletin 56: 1234鈥?235. marpolbul.2007.11.014">CrossRef
    45. Shannon, C. E. & W. Weaver, 1949. The Mathematical Theory of Communication. University of Illinois Press, Urbana.
    46. Simboura, N. & A. Zenetos, 2002. Benthic indicators to use in ecological quality classification of Mediterranean soft bottoms marine ecosystems, including a new biotic index. Mediterranean Marine Science 3: 77鈥?11. mms.249">CrossRef
    47. Spearman, C., 1904. General intelligence objectively determined and measured. American Journal of Psychology 15: 201鈥?93. CrossRef
    48. Stewart, D. W., 1981. The application and misapplication of factor analysis in marketing research. Journal of Marketing Research 18: 51鈥?2. CrossRef
    49. Stodden, V., 2011. Trust your science? Open your data and code. AMSTAT News 409: 21鈥?2.
    50. Tagliapietra, D., M. Pavan & C. Wagner, 1998. Macrobenthic community changes related to eutrophication in Palude della Rosa (Venetian lagoon, Italy). Estuarine Coast and Shelf Science 47: 217鈥?26. CrossRef
    51. Tagliapietra, D., M. Pavan & C. Wagner, 2000. Benthic patterns in a salt marsh basin: a snapshot of Palude della Rosa (Venetian Lagoon, Italy). Wetlands Ecology and Management 8: 287鈥?92. CrossRef
    52. Tagliapietra, D., M. Sigovini & A. Volpi Ghirardini, 2009. A review of terms and definitions to categorise estuaries, lagoons and associated environments. Marine and Freshwater Research 60: 497鈥?09. CrossRef
    53. Tagliapietra, D., M. Sigovini & P. Magni, 2012. Saprobity: a unified view of benthic succession models for coastal lagoon. Hydrobiologia 686: 15鈥?8. CrossRef
    54. Teixeira, H., F. Salas, J. M. Neto, J. Patr铆cio, R. Pinto, H. Ver铆ssimo, J. A. Garc铆a-Charton, C. Marcos, A. P茅rez-Ruzafa & J. C. Marques, 2008. Ecological indices tracking distinct impacts along disturbance-recovery gradients in a temperate NE Atlantic Estuary 鈥?guidance on reference values. Estuarine Coastal and Shelf Science 80: 130鈥?40. CrossRef
    55. Teixeira, H., J. M. Neto, J. Patr铆cio, H. Ver铆ssimo, R. Pinto, F. Salas & J. C. Marques, 2009. Quality assessment of benthic macroinvertebrates under the scope of WFD using BAT, the Benthic Assessment Tool. Marine Pollution Bulletin 58: 1477鈥?486. marpolbul.2009.06.006">CrossRef
    56. Thurstone, L. L., 1931. Multiple factor analysis. Psychological Review 38: 406鈥?27. CrossRef
    57. Thurstone, L. L., 1947. Multiple Factor Analysis. University of Chicago Press, Chicago.
    58. Vega, M., R. Pardo, E. Barrado & L. Deban, 1998. Assessment of seasonal and polluting effects on the quality of river water by exploratory data analysis. Water Research 32: 3581鈥?592. CrossRef
  • 作者单位:Marco Sigovini (1)
    Erica Keppel (1)
    Davide Tagliapietra (1)

    1. CNR鈥擭ational Research Council of Italy, ISMAR鈥擬arine Sciences Institute, Arsenale-Tesa 104, Castello 2737/F, 30122, Venice, Italy
  • ISSN:1573-5117
文摘
M-AMBI is a multimetric index for assessing the ecological quality status of marine and transitional waters. It is based on benthic macroinvertebrates and integrates AMBI, a biotic index based on species sensitivity/tolerance, with diversity and richness, making it compliant with the European Water Framework Directive. The success of AMBI paved the way for the introduction of M-AMBI, which was subsequently incorporated into the regulations of several European countries. The M-AMBI algorithm integrates the metrics by means of factor analysis (FA). In this paper, we first reproduced the algorithm using the open source R software. This enabled us to point out that FA is not functional to M-AMBI, and its omission does not appreciably change the results. We then enhanced the applicability of the index, making it independent of the number of samples. In this way, M-AMBI is closely approximated by the simple mean of the normalised metrics with no need for multivariate techniques. Finally, we further simplified the approach, presenting a bivariate version that is still highly correlated with M-AMBI, in which the constitutive metrics are reduced to a diversity measure and a species sensitivity index. The properties of this bivariate version include simplicity, transparency, robustness, and openness.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700