Rice allelopathy and its properties of molecular ecology
详细信息    查看全文
  • 作者:Wenxiong Lin (1) (2)
    Changxun Fang (1) (2)
    Ting Chen (1) (2)
    Ruiyu Lin (1) (2)
    Jun Xiong (1) (2)
    Haibin Wang (1) (2)
  • 关键词:Allelopathy ; rice ; molecular mechanism ; stress
  • 刊名:Frontiers in Biology
  • 出版年:2010
  • 出版时间:June 2010
  • 年:2010
  • 卷:5
  • 期:3
  • 页码:255-262
  • 全文大小:144KB
  • 参考文献:1. Belz R G (2007). Allelopathy in crop/weed interactions鈥攁n update. Pest Manag Sci, 63(4): 308鈥?26 CrossRef
    2. Bennett L T, Kasela S, Tibbits J (2008). Non-parametric multivariate comparisons of soil fungal composition: Sensitivity to thresholds and indications of structural redundancy in T-RFLP data. Soil Biol Biochem, 40(7): 1601鈥?611 CrossRef
    3. Berendji S, Asghari J B, Matin A A (2008). Allelopathic potential of rice ( / Oryza sativa) varieties on seedling growth of barnyardgrass ( / Echinochloa crus-galli). J Plant Interact, 3(3): 175鈥?80 CrossRef
    4. Bi H H, Zeng R S, Su L M, An M, Luo S M (2007). Rice allelopathy induced by methyl jasmonate and methyl salicylate. J Chem Ecol, 33(5): 1089鈥?103 CrossRef
    5. Blum U (1998). Effects of microbial utilization of phenolic acids and their phenolic acid breakdown products on allelopathic interactions. J Chem Ecol, 24(4):685鈥?08 CrossRef
    6. Chou C H, Chang F J, Oka H I (1991). Allelopathic potential of wild rice / Oryza perennis. Taiwania, 36: 201鈥?10
    7. Dilday R H, Mattice J D, Moldenhauer K A (2000). An overview of rice allelopathy in the USA. In: Kim K U, Shin D H, eds. Rice allelopathy. Kyungpook National University, Taegu, 15鈥?6
    8. Dilday R H, Nastasi P, Lin J, Smith R J (1991). Allelopathic activity in rice ( / Oryza sativa L.) against ducksalad ( / Heteranthea limosa (sw.) Wild.). In: Hanson J N, Shaffer M J, Ball D A, Cole C V, eds. Proceedings of the Symposium for Sustainable agriculture for the Great Plains. ARS, USDA, 193鈥?01
    9. Dilday R H, Yan W G, Moldenhauer K A K, Gravois K A (1998). Allelopathic activity in rice for controlling major aquatic weeds. In: Olofsdotter M, ed. Allelopathy in rice. International Rice Research Institute, Los Banos, Philippines, 7鈥?6
    10. Dong Z H (2002). Study on dynamic genetics of allelopathy and its interactions with environment in rice ( / Oryza sativa L.). MS Thesis, Fujian Agriculture and Forestry University, Fujian, China (in Chinese)
    11. Ebana K, Yan WG, Dilday R H, Namai H, Okuno K (2001). Analysis of QTL associated with the allelopathic effect of rice using watersoluble extracts. Breed Sci, 51(1): 47鈥?1 CrossRef
    12. Einhellig F A (1999). An integrated view of allelochemicals amid multiple stresses. In: Inderjit, Dakshini K M M, Foy C L, eds. Principles and practices of plant ecology: Allelochemical Interactions. Boca Raton, Florida, USA: CRC Press, 479鈥?94
    13. Euringer K, Lueders T (2008). An optimised PCR/T-RFLP fingerprinting approach for the investigation of protistan communities in groundwater environments. J Microbiol Methods, 75(2): 262鈥?68 CrossRef
    14. Fang C X, Xiong J, Qiu L, Wang H B, Song B Q, He H B, Lin R Y, Lin W X (2009). Analysis of gene expressions associated with increased allelopathy in rice ( / Oryza sativa L.) induced by exogenous salicylic acid. Plant Growth Regul, 57(2): 163鈥?72 CrossRef
    15. Foy C L (1999). How to make bioassays for allelopathy more relevant to field conditions with particular reference to cropland weeds. In: Inderjit, Dakshini K M M, Foy C L, eds. Principles and practices in plant ecology: Allelopathic interactions. Boca Raton, Florida, USA: CRC Press, 25鈥?3
    16. Griffin T J, Gygi S P, Ideker T, Rist B, Eng J, Hood L, Aebersold R (2002). Complementary profiling of gene expression at the transcriptome and proteome levels in / Saccharomyces cerevisiae. Mol Cell Proteomics, 1(4): 323鈥?33 CrossRef
    17. Gygi S P, Rochon Y, Franza B R, Aebersold R (1999). Correlation between protein and mRNA abundance in yeast. Mol Cell Biol, 19(3): 1720鈥?730
    18. He H B (2009). Change in allelopathic potential of rice and its molecular mechanism in the responses to barnyardgrass stress. DR Thesis, Fujian Agriculture and Forestry University, Fujian, China (in Chinese)
    19. He H B, Lin W X, Wang H B, Fang C X, Gan Q F, Wu W X, Chen X X, Liang Y Y (2006). Analysis of metabolites in root exudates from allelopathic and non allelopathic rice seedlings. Allelopathy J, 18(2): 247鈥?54
    20. He H Q, Jia X L, Liang Y Y, Ke Y Q, Guo Y C, Liang K J, Lin W X (2005). Analyzing the molecular mechanism of crop allelopathy by using differential proteomics. Chinese Acta Ecol Sin, 12: 3141鈥?145 (in Chinese)
    21. He H Q, Shen L H, Xiong J, Jia X L, Lin W X, Wu H (2004). Conditional genetic effect of allelopathy in rice ( / Oryza sativa L.) under different environmental conditions. Plant Growth Regul, 44(3): 211鈥?18 CrossRef
    22. Hong H, Pruden A, Reardon K F (2007). Comparison of CE-SSCP and DGGE for monitoring a complex microbial community remediating mine drainage. J Microbiol Methods, 69(1): 52鈥?4 CrossRef
    23. Hu Q, Dou M N, Qi H Y, Xie X M, Zhuang G Q, Yang M (2007). Detection, isolation, and identification of cadmium-resistant bacteria based on PCR-DGGE. J Environ Sci (China), 19(9): 1114鈥?119
    24. Inderjit (1996). Plant phenolics in allelopathy. Bot Rev, 62: 186鈥?02 CrossRef
    25. Jensen L B, Courtois B, Shen L S, Li Z K, Olofsdotter M, Mauleon R P (2001). Locating genes controlling allelopathic effects against / Echinochloa crus-galli (L.) in upland rice. Agron J, 93: 21鈥?6
    26. Kim K W, Kim K U, Shin D H, Lee I J, Kim H Y, Koh J C, Nam S H (2000). Searching for allelochemicals from the allelopathic rice cultivar, / Kouketsumochi. Korean J Weed Sci, 20: 197鈥?07
    27. Lee S B, Seo K I, Koo J H, Hur H S, Shin J C (2005). QTLs and molecular markers associated with rice allelopathy. In: Haper J D I, An M, Kent J H, eds. Proceedings of the Fourth World Congress on Allelopathy 鈥淓stablishing the scientific base鈥?Charles Sturt University, Wagga Wagga, NSW, Australia. 505鈥?07
    28. Lin R Y, Rong H, Zhou J J, Yu C P, Ye C Y, Chen L S, Lin W X (2007). Impact of rice seedling allelopathy on rhizospheric microbial populations and their functional diversities. Chinese Acta Ecol Sin, 27: 3644鈥?654 (in Chinese) CrossRef
    29. Lin WX, He H B, Xiong J, Shen L H, Wu M H, Lin R Y, He H Q, Liang Y Y, Li Z W, Chen T (2006). Advances in the investigation of rice allelopathy and its molecular ecology. Acta Ecol Sin, 8: 2687鈥?694 (in Chinese)
    30. Lin W X, He H Q, Guo Y C, Chen F Y, Liang Y Y (2001). Rice allelopathy and its physiobiochemical characteristics. Chin J Appl Ecol, 6: 871鈥?75 (in Chinese)
    31. Lin W X, He H Q, Kim K U (2003). The performance of allelopathic heterosis in rice ( / Oryza sativa L.). Allelopathy J, 12: 179鈥?88
    32. Lin W X, Kim K U, Shin D H (2000). Allelopathic potential in rice ( / Oryza sativa L.) and its modes of action on barnyardgrass ( / Echinochloa crus-galli). Allelopathy J, 7: 215鈥?24
    33. Mac铆as F A, Molinillo J M G, Varela R M, Galindo J C G (2007). Allelopathy鈥攁 natural alternative for weed control. Pest Manag Sci, 63(4): 327鈥?48 CrossRef
    34. Mattice J D, Dilday R H, Gbur E E, Skulman BW(2001). Barnyardgrass growth inhibition with rice using high performance liquid chromatography to identify rice accession activity. Agron J, 93: 8鈥?1
    35. Mattice J D, Lavy T, Skulman B W, Dilday R H (1998). Searching for allelochemicals in rice that control ducksalad. In: Olofsdotter M, ed. Allelopathy in rice. Proc. Workshop on Allelopathy in Rice. Manila, Philippines, 25鈥?7 Nov. 1996. IRRI, Manila, Philippines. 81鈥?8
    36. Moody K (1991). Weed management in rice. In: Pimentel D, ed. Handbook of Pest Management in Agriculture. Boca Raton, Florida, USA: CRC Press, 301鈥?28
    37. Navarez D C, Olofsdotter M (1996). Relay seeding technique for screening allelopathic rice ( / Oryza sativa). Proceedings of the 2nd International Weed Control Congress, Copenhagen, Denmark. 1285鈥?290
    38. Nie L, Wu G, Zhang W (2006). Correlation between mRNA and protein abundance in Desulfovibrio vulgaris: a multiple regression to identify sources of variations. Biochem Biophys Res Commun, 339(2): 603鈥?10 CrossRef
    39. Park S, Ku Y K, Seo MJ, Kim D Y, Yeon J E, Lee KM, Jeong S C, Yoon W K, Harn C H, Kim H M (2006). Principal component analysis and discriminant analysis (PCA-DA) fordiscriminating profiles of terminal restriction fragment lengthpolymorphism (T-RFLP) in soil bacterial communities. Soil Biol Biochem, 38(8): 2344鈥?349 CrossRef
    40. Paterson A H, Tanksley S D, Sorrells ME (1991). DNA markers in plant improvement. Adv Agron, 46: 39鈥?0 CrossRef
    41. Putnam A R, Duke W B (1974). Biological suppression of weeds: Evidence for allelopathy in accessions of cucumber. Science, 185(4148): 370鈥?72 CrossRef
    42. Rice E L (1984). Allelopathy, 2nd ed. Orlando, Florida, USA: Academic Press, 422
    43. Rice E L (1987). Allelopathy: An overview. Allelochemical: Role in agriculture in forestry. In: American Chemical Society Symposium Series No. 330. 8鈥?2
    44. Rimando A M, Olofsdotter M, Dayan F E, Duke S O (2001). Searching for rice allelochemicals. an example of bioassay-guided isolation. Agron J, 93: 16鈥?0
    45. Schmalenberger A, Tebbe C C, Kertesz M A, Drake H, K眉sel K (2008). Two-dimensional single strand conformation polymorphism (SSCP) of 16S rRNA gene fragments reveals highly dissimilar bacterial communities in an acidic fen. Eur J Soil Biol, 44(5鈥?): 495鈥?00 CrossRef
    46. Seal A N, Haig T, Pratley J E (2004). Evaluation of putative allelochemicals in rice root exudates for their role in the suppression of arrowhead root growth. J Chem Ecol, 30(8): 1663鈥?678 CrossRef
    47. Shen L H, Liang Y Y, He H Q, He J, Liang K J, Lin W X (2004). Comparative analysis on the evaluation efficiency of allelopathic potential in rice ( / Oryza sativa L.) by using different bioassay methods and its application. Chin J Appl Ecol, 9: 1575鈥?579 (in Chinese)
    48. Shen L H, Lin W X (2007). Effects of phosphorus levels on allelopathic potential of rice co-cultured with barnyardgrass. Allelopathy J, 19: 23鈥?2
    49. Shen L H, Xiong J, Lin W X (2008). Rice allelopathy research in China. In: Zeng R S, Mallik A U, Luo S M, eds. Allelopathy in sustainable agriculture and forestry. New York: Springer, 215鈥?33 CrossRef
    50. Smalla K, Oros-Sichler M, Milling A, Heuer H, Baumgarte S, Becker R, Neuber G, Kropf S, Ulrich A, Tebbe C C (2007). Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCRamplified 16S rRNA gene fragments: do the different methods provide similar results? J Microbiol Methods, 69(3): 470鈥?79 CrossRef
    51. Song B Q, Xiong J, Fang C X, Qiu L, Lin R Y, Liang Y Y, Lin W X (2008). Allelopathic enhancement and differential gene expression in rice under low nitrogen treatment. J Chem Ecol, 34(5): 688鈥?95 CrossRef
    52. Sun X X (2009a). Allelopathic weed-suppressing effects of rice accessions and the rihzosphere properties under dry-raising condition in the field. DR Thesis, Fujian Agriculture and Forestry University, Fujian, China (in Chinese)
    53. Sun X X, Wang H B, Lin H F, He H B, Lu J C, Zeng C M, Xiong J, Lin W X (2009b). Effects of weed suppression by different allelopathic rice varieties under dry-raising condition. Chin J Eco-Agric, 17(5): 842鈥?46 CrossRef
    54. Taylor E B, Williams M A (2010). Microbial protein in soil: influence of extraction method and C amendment on extraction and recovery. Microb Ecol, 59(2): 390鈥?99 CrossRef
    55. Wang H B, He H B, Qiu L, Shen L H, Fang C X, Lin R Y, Lin W X (2009a). Molecular physiological properties of the enhanced weedsuppression ability of rice allelopathy induced by lower phosphorus supplies. Chin J Appl Environ Biol, 15(3): 289鈥?94 (in Chinese)
    56. Wang H B, He H B, Ye C Y, Lu J C, Chen R S, Guo X K, Liu C H, Lin W X (2009b). Physiological responses of allelopathic rice accessions to low phosphorus stress. Allelopathy J, 23(1): 175鈥?84
    57. Wang H B, Xiong J, Fang C X, Qiu L, Wu W X, He H B, Lin W X (2007). FQ-PCR analysis on the differential expression of the key enzyme genes involved in isoprenoid metabolic pathway in allelopathic and weak allelopathic rice accessions ( / Oryza sativa L.) under nitrogen stress condition. Acta Agron Sin, 33(8): 1329鈥?334 (in Chinese)
    58. Wu H, Pratley J, Lemerle D, Haig T (1999). Crop cultivars with allelopathy capability. Weed Res, 39(3): 171鈥?80 CrossRef
    59. Xiong J (2008). Studies on Molecular Ecological Mechanisms of Rice Allelotathy in the Suppression of Weed Mediated by Nitrogen Nutrient. DR Thesis, Fujian Agriculture and Forestry University, Fujian, China (in Chinese)
    60. Xiong J, Jia X L, Deng J Y, Jiang B Y, He H B, Lin W X (2007a). Analysis of epistatic effect and QTL interactions with environment for allelopathy in rice ( / Oryza sativa L.). Allelopathy J, 20(2): 259鈥?68
    61. Xiong J, Wang H B, Fang C X, Qiu L, Wu W X, He H B, Lin W X (2007b). The differential expression of the genes of the key enzymes involved in phenolic compound metabolism in rice ( / Oryza sativa L.) under different nitrogen supply. J Plant Physiol Mol Biol, 33(5): 387鈥?94 (in Chinese)
    62. Xu Z H, He Y, Cui S, Zhao M, Zhang X, Li D (2003). Genes mapping on rice allelopathy against barnyardgrass. Chin J Appl Ecol, 14(12): 2258鈥?260 (in Chinese)
    63. Yang C M, Chou C H, Chang I F, Lin S J (2004). Effects of three allelopathic phenolics on chlorophyll accumulation of rice ( / Oryza sativa) seedlings: II Stimulation of consumption-orientation. Bot Bull Acad Sin, 45: 119鈥?25
    64. Ying Y L, Lv Z M, Min H, Cheng J (2008). Dynamic changes of microbial community diversity in a photohydrogen producing reactor monitored by PCR-DGGE. J Environ Sci (China), 20(9): 1118鈥?125
    65. Zeng D L, Qian Q, Teng S, Dong G J, Fujimoto H, Kunihifo Y, Zhu L H (2003). Genetic analysis of rice allelopathy. Chin Sci Bull, 48(3): 265鈥?68 (in Chinese)
    66. Zhu J (1995). Analysis of conditional genetic effects and variance components in developmental genetics. Genetics, 141(4): 1633鈥?639
  • 作者单位:Wenxiong Lin (1) (2)
    Changxun Fang (1) (2)
    Ting Chen (1) (2)
    Ruiyu Lin (1) (2)
    Jun Xiong (1) (2)
    Haibin Wang (1) (2)

    1. Key Laboratory of Biopesticide and Chemical Biology, Ministry of Education, Fuzhou, 350002, China
    2. Agroecological Institute/School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
  • ISSN:1674-7992
文摘
Crop allelopathy is a promising and environmentally friendly method in weed control; however, the inducible genetic trait for allelopathy in the suppression of weeds needs to be overcome for practical use. Further study needs to be directed to this end to elucidate the molecular genetics and its physiologic mechanism. In this paper, the authors review recent advances in the investigation of rice allelopathy and its molecular regulatory mechanism, especially in responses to stressful conditions including biotic and abiotic factors in China. Previous studies show that rice allelopathy could be enhanced when the rice accession was exposed to stressful conditions, and further analysis by the transcriptomics and proteomics approaches conducted in our laboratory indicated that the increase in allelopathic potential of rice, when exposed to the stresses, was attributed to increased expression level of genes involved in phenolic synthetic metabolism. The increasing phenolic compounds have been confirmed as the main allelochemicals and they jointly act to suppress the target, especially in responses to stressful condition, but it seems to be the primary effect in phenolic allelopathy. We still wonder how the exudates from rice root, which were released into rhizosphere soil, are transformed by soil microorganism to produce the higher secondary effect of phenolic allelopathy in the suppression of weeds. Therefore, the authors suggest that rhizosphere biologic properties of allelopathy in rice and its mechanism are being the key research areas in the world now, and systems biology and its approaches, such as metagenomics and metaproteomics, would be helpful to reveal the process and its molecular ecological mechanism regarding rhizospheric biology of rice allelopathy.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700