Microsatellite polymorphism and its association with body weight and selected morphometrics of farm red fox (Vulpes vulpes L.)
详细信息    查看全文
  • 作者:Magdalena Zatoń-Dobrowolska ; Anna Mucha ; Heliodor Wierzbicki
  • 关键词:Body weight ; Marker assisted selection ; Microsatellites ; Morphometrics ; Red fox
  • 刊名:Journal of Applied Genetics
  • 出版年:2014
  • 出版时间:November 2014
  • 年:2014
  • 卷:55
  • 期:4
  • 页码:475-484
  • 全文大小:496 KB
  • 参考文献:1. Bardeleben C, Moore RL, Wayne RK (2005) A molecular phylogeny of the Canidae based on six nuclear loci. Mol Phylogenet Evol 37:815-31 CrossRef
    2. Boyko AR, Quignon P, Li L, Schoenebeck JJ, Degenhardt JD et al (2010) A simple genetic architecture underlies morphological variation in dogs. PLoS Biol 8(8):1-3 CrossRef
    3. Breen M, Jouquand S, Renier C, Mellersh CS, Hitte C, Holmes NG, Chéron A, Suter N, Vignaux F, Bristow AE, Priat C, McCann E, André C, Boundy S, Gitsham P, Thomas R, Bridge WL, Spriggs HF, Ryder EJ, Curson A, Sampson J, Ostrander EA, Binns MM, Galibert F (2001) Chromosome-specific single-locus FISH probes allow anchorage of an 1800-marker integrated radiation-hybrid/linkage map of the domestic dog genome to all chromosomes. Genome Res 11:1784-795 CrossRef
    4. Gaunt TR, Rodriguez S, Zapata C, Day NMI (2006) MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers. BMC Bioinforma 7:227. doi:10.1186/1471-2105-7-227 CrossRef
    5. Grzes M, Szczerbal I, Fijak-Nowak H, Szydlowski M, Switonski M (2011) Two candidate genes (FTO and INSIG2) for fat accumulation in four canids: chromosome mapping, gene polymorphisms and association studies of body and skin weight of red foxes. Cytogenet Genome Res 135:25-2 CrossRef
    6. Guyon R, Lorentzen TD, Hitte C, Kim L, Cadieu E, Parker HG, Quignon P, Lowe JK, Renier C, Gelfenbeyn B, Vignaux F, DeFrance HB, Gloux S, Mahairas GG, André C, Galibert F, Ostrander EA (2003) A 1-Mb resolution radiation hybrid map of the canine genome. PNAS 100(9):5296-301 CrossRef
    7. Holmes NG, Dickens HF, Parker HL, Binns MM, Mellersh CS, Sampson J (1995) Eighteen canine microsatellites. Anim Genet 26:132-33 CrossRef
    8. Jouquand S, Priat C, Hitte C, Lachaume P, André C, Galibert F (2000) Identification and characterization of a set of 100 tri- and dinucleotide microsatellites in the canine genome. Anim Genet 31:266-72 CrossRef
    9. Klukowska J, Szyd?owski M, ?witoński M (2002) Linkage of the canine-derived microsatellites in the red fox (Vulpes vulpes) and arctic fox (Alopex lagopus) genomes. Hereditas 137:234-36 CrossRef
    10. Kukekova AV, Trut LN, Oskina IN, Kharlamova AV, Shikhevich SG, Kirkness EF, Aguirre GD, Acland GM (2004) A marker set for construction of a genetic map of the silver fox (Vulpes vulpes). J Hered 95:185-94 CrossRef
    11. Kukekova AV, Trut LN, Oskina IN, Johnson JL, Temnykh SV, Kharlamova AV, Shepeleva DV, Gulievich RG, Shikhevich SG, Graphodatsky AS, Aguirre GD, Acland GM (2007) A meiotic linkage map of the silver fox, aligned and compared to the canine genome. Genome Res 17:387-99 CrossRef
    12. Kukekova AV, Trut LN, Chase K, Kharlamova AV, Johnson JL, Temnykh SV, Oskina IN, Gulevich RG, Vladimirova AV, Klebanov S, Shepeleva DV, Shikhevich SG, Acland GM, Lark KG (2011a) Mapping loci for fox domestication: deconstruction/reconstruction of a behavioral phenotype. Behav Genet 41:593-06 CrossRef
    13. Kukekova AV, Johnson JL, Teiling C, Li L, Oskina IN, Kharlamova AV, Gulevich RG, Padte R, Dubreuil MM, Vladimirova AV, Shepeleva DV, Shikhevich SG, Sun O, Ponnala L, Temnykh SV, Trut LN, Acland GM (2011b) Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes). BMC Genomics 12:482. doi:10.1186/1471-2164-12-482 CrossRef
    14. Ladon D, Schelling C, Dolf G, Switonski M, Schl?pfer J (1998) The highly polymorphic canine microsatellite ZuBeCa6 is localized on canine chromosome 5q12-q13. Anim Genet 29:466-67
    15. Lindblad-Toh K et al (2005) Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438:803-19 CrossRef
    16. Neff MW, Broman KW, Mellersh CS, Ray K, Acland GM, Aguirre GD, Ziegle JS, Ostrander EA, Rine J (1999) A second-generation genetic linkage map of the domestic dog, canis familiaris. Genetics 151:803-20
    17. Nowacka-Woszuk J, Skorczyk A, Flisikowski K, Szydlowski M, Switonski M (2011) Polymorphic variants within a putative upstream open reading frame of the MC4R gene do not affect body weight of farmed red foxes. Anim Genet 43:480-81 CrossRef
    18. Ostrander EA, Wayne RK (2005) The canine genome. Genome Res 15:1706-716 CrossRef
    19. Peura J, Serenius T, Stranden I (2004) Economic weights for litter size and skin character traits in Finnish blue fox production. Anim Sci Pap Rep 22(suppl 2):81-6
    20. Sidjanin DJ, Lowe JK, McElwee JL, Milne BS, Phippen TM, Sargan DR, Aguirre GD, Acland GM, Ostrander EA (2002) Canine CNGB3 mutations establish cone degeneration as orthologous to the human achromatopsia locus ACHM3. Hum Mol Genet 11:1823-833 CrossRef
    21. Skorczyk A, Flisikowski K, Szydlowski M, Cieslak M, Fries R, Switonski M (2010) Association of MC3R gene polymorphisms with body weight in the red fox and comparative gene organization in four canids. Anim Genet 42:104-07 CrossRef
    22. Skorczyk A, Flisikowski K, Switonski M (2012) A comparative analysis of MC4R gene sequence, polymorphism, and chromosomal localization in Chinese raccoon dog and arctic fox. DNA Cell Biol 31:732-38 CrossRef
    23. Spady TC, Ostrander EA (2007) Canid genomics: mapping genes for behavior in the silver fox. Genome Res 17:259-63 CrossRef
    24. Switonski M, Szczerbal I, Nowacka-Woszuk J (2009) Comparative genomics of 3 farm canids in relation to the dog. Cytogenet Genome Res 126:86-6 CrossRef
    25. Vaysse A, Ratnakumar A, Derrien T, Axelsson E, Rosengren Pielberg G et al (2011) Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping. PLoS Genet 7(10):1-1 CrossRef
    26. Wayne RK (2001) Consequences of domestication: morphological diversity of the dog. In: Ruvinsky A, Sampson J (eds) The genetic of the dog. CAB International, Wallingford, UK, pp 43-0
    27. Wierzbicki H, Jagusiak W (2006) Breeding value evaluation in Polish fur animals: Estimates of (co)variances due to direct and litter effects for fur coat and reproduction traits. Czech J Anim Sci 51(1):39-6
    28. Wierzbicki H, ?uk B, Chudoba K (2006) Total merit index to estimate the breeding value of Polish arctic foxes. Anim Sci Pap Rep 24(2):11-5
    29. Wierzbicki H, Peura J, Filistowicz A, Przysiecki P (2007) Economic weights for litter size and fur coat traits of arctic fox in Poland. J Anim Feed Sci 16:140-52
    30. Zajac M, Klukowska J, Slomski R, Switonski M (2000) Polymorphism of nine canine-derived microsatellites in farm silver foxes (Vulpes fulvus). J Appl Genet 41:43-0
    31. Zatoń-Dobrowolska M, Moska M, Wierzbicki H, Przysiecki P, Mucha A (2012) Comparative analysis of morphometrics of wild and farm foxes (Vulpes vulpesL.) -preliminary results. Proceedings of the Xth International Scientific Congress in fur animal production. Copenhagen, Denmark, 21-4.08.2012. Scientifur 36(3/4):275-79
    32. Zhang Q, Acland GM, Wu WX, Johnson JL, Pearce-Kelling S, Tulloch B, Vervoort R, Wright AF, Aguirre GD (2002) Different RPGR exon ORF15 mutations in canids provide insights into photoreceptor cell degeneration. Hum Mol Genet 11:993-003 CrossRef
  • 作者单位:Magdalena Zatoń-Dobrowolska (1)
    Anna Mucha (1)
    Heliodor Wierzbicki (1)
    David Morrice (2)
    Magdalena Moska (1)
    Maciej Dobrowolski (3)
    Piotr Przysiecki (4)

    1. Department of Genetics, Wroclaw University of Environmental and Life Sciences, Kozuchowska 7, 51-631, Wroclaw, Poland
    2. The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, Scotland, UK
    3. Institute of Animal Breeding, Wroclaw University of Environmental and Life Sciences, Wroclaw, Poland
    4. Institute of Agriculture, State School of Higher Education, Leszno, Poland
  • ISSN:2190-3883
文摘
Polymorphism of 30 canine-derived microsatellites was studied in a group of 200 red foxes kept on 2 Polish farms. 22 out of 30 microsatellites were selected to study association between marker genotypes and body weight (BW), body length (BL), body circumference (BC), tail length (TL), ear height (EH), length of the right front limb (FRLL), length of the right rear limb (RRLL), length of the right front foot (FRFL) and length of the right rear foot (RRFL). A total of 112 alleles and 243 genotypes were found at 22 autosomal microsatellite loci. Three monomorphic loci deemed as uninformative were excluded from the study. The association between marker genotypes and the studied traits was analysed using general linear model (GLM) procedure and least squares means (LSM). Linkage disequilibrium (LD) was estimated to assess non-random association between microsatellite loci. Out of 19 microsatellites studied four markers showed no association with the studied traits, three markers had a significant effect on one trait, and another three markers had significant effect on two traits. Among ten microsatellites with significant effect on four economically important traits (BW, BL, BC, TL) four were associated with two characters: marker FH2613 with BW and BC, marker FH2097withBL and BC, marker ZUBECA6 with BW and BC, whereas marker REN75M10 was associated with BL and TL. The strongest LD (r2 ranged from 0.15 to 0.33) was estimated between nine loci with significant effect on economically important traits (BW, BL, BC, TL).

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700