Invasion genetics of Chromolaena odorata (Asteraceae): extremely low diversity across Asia
详细信息 查看全文
- 作者：Xiangqin Yu (1) (2)
Tianhua He (3)
Jianli Zhao (4)
Qiaoming Li (1) - 关键词：Chromolaena odorata ; Genetic diversity ; Haplotype network ; Invasion genetics ; Phylogeography ; Source location
- 刊名：Biological Invasions
- 出版年：2014
- 出版时间：November 2014
- 年：2014
- 卷：16
- 期：11
- 页码：2351-2366
- 全文大小：2,803 KB
- 参考文献：1. Allendorf FW, Lundquist LL (2003) Introduction: population biology, evolution, and control of invasive species. Conserv Biol 17(1):24鈥?0 CrossRef
2. Bandelt HJ, Forster P, R枚hl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16(1):37鈥?8 CrossRef
3. Bennette F, Rao V (1968) Distribution of an introduced weed / Eupatorium odoratum Linn. (Compositae) in Asia and Africa and possibility of its biological control. Int J Pest Manag 14(3):277鈥?81 CrossRef
4. Biswas K (1934) Some foreign weeds and their distribution in India and Burma. Indian For 60(12):862鈥?65
5. Bossdorf O, Auge H, Lafuma L, Rogers WE, Siemann E, Prati D (2005) Phenotypic and genetic differentiation between native and introduced plant populations. Oecologia 144(1):1鈥?1 CrossRef
6. Chiang TY, Schaal BA, Peng CI (1998) Universal primers for amplification and sequencing a noncoding spacer between the / atpB and / rbcL genes of chloroplast DNA. Bot Bull Acad Sin 39(4):245鈥?50
7. Colautti RI, Maron JL, Barrett SCH (2009) Common garden comparisons of native and introduced plant populations: latitudinal clines can obscure evolutionary inferences. Evol Appl 2(2):187鈥?99 CrossRef
8. Coleman JR (1989) Embryology and cytogenetics of apomictic hexaploid / Eupatorium odoratum L. (Compositae). Rev Bras Genet 12:803鈥?17
9. Cruz Z, Muniappan R, Reddy GVP (2006) Establishment of / Cecidochares connexa (Diptera: Tephritidae) in Guam and its effect on the growth of / Chromolaena odorata (Asteraceae). Ann Entomol Soc Am 99(5):845鈥?50 CrossRef
10. De Rouw A (1991) The invasion of / Chromolaena odorata (L.) King & Robinson (ex / Eupatorium odoratum), and competition with the native flora, in a rain forest zone, south-west Cote d鈥橧voire. J Biogeogr 18(1):13鈥?3 CrossRef
11. Dlugosch K, Parker I (2008) Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions. Mol Evol 17(1):431鈥?49
12. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19(1):11鈥?5
13. Dukes JS, Mooney HA (1999) Does global change increase the success of biological invaders? Trends Ecol Evol 14(4):135鈥?39 CrossRef
14. Ellstrand NC, Schierenbeck KA (2000) Hybridization as a stimulus for the evolution of invasiveness in plants? Proc Natl Acad Sci USA 97(13):7043鈥?050 CrossRef
15. Estoup A, Guillemaud T (2010) Reconstructing routes of invasion using genetic data: why, how and so what? Mol Evol 19(19):4113鈥?130
16. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Evol 14(8):2611鈥?620
17. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131(2):479鈥?91
18. Excoffier L, Laval G, Schneider S (2005) ARLEQUIN (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47鈥?0
19. Frankham R, Ralls K (1998) Conservation biology-Inbreeding leads to extinction. Nature 392(6675):441鈥?42 CrossRef
20. Fuentes-Contreras E, Figueroa C, Reyes M, Briones L, Niemeyer H (2004) Genetic diversity and insecticide resistance of / Myzus persicae (Hemiptera: Aphididae) populations from tobacco in Chile: evidence for the existence of a single predominant clone. Bull Entomol Res 94(01):11鈥?8 CrossRef
21. Garcia-Rossi D, Rank N, Strong DR (2003) Potential for self-defeating biological control? Variation in herbivore vulnerability among invasive / Spartina genotypes. Evol Appl 13(6):1640鈥?649
22. Gautier L (1992) Taxonomy and distribution of a tropical weed: / Chromolaena odorata (L.) R. King and H. Robinson. Candollea 47(2):645鈥?62
23. Gautier L (1993) Reproduction of a pantropical weed: / Chromolaena odorata (L.) R. King and H. Robinson. Candollea 48(1):179鈥?93
24. Genton BJ, Shykoff JA, Giraud T (2005) High genetic diversity in French invasive populations of common ragweed, / Ambrosia artemisiifolia, as a result of multiple sources of introduction. Mol Evol 14(14):4275鈥?285
25. Ghazoul J (2004) Alien abduction: disruption of native plant-pollinator interactions by invasive species. Biotropica 36(2):156鈥?64
26. Goodall J, Erasmus D (1996) Review of the status and integrated control of the invasive alien weed, / Chromolaena odorata, in South Africa. Agric Ecosyst Environ 56(3):151鈥?64 CrossRef
27. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9. 3). http://www.unil.ch/izea/softwares/fstat.html
28. H盲nfling B, Kollmann J (2002) An evolutionary perspective of biological invasions. Trends Ecol Evol 17(12):545鈥?46 CrossRef
29. Harrison JS, Mondor EB (2011) Evidence for an invasive aphid 鈥渟uperclone鈥? extremely low genetic diversity in oleander aphid ( / Aphis nerii) populations in the southern United States. PLoS ONE 6(3):e17524 CrossRef
30. Hawley DM, Hanley D, Dhondt AA, Lovette IJ (2006) Molecular evidence for a founder effect in invasive house finch ( / Carpodacus mexicanus) populations experiencing an emergent disease epidemic. Mol Evol 15(1):263鈥?75
31. Hodgins KA, Lai Z, Nurkowski K, Huang J, Rieseberg LH (2013) The molecular basis of invasiveness: differences in gene expression of native and introduced common ragweed ( / Ambrosia artemisiifolia) in stressful and benign environments. Mol Evol 22(9):2496鈥?510
32. Keller SR, Taylor DR (2008) History, chance and adaptation during biological invasion: separating stochastic phenotypic evolution from response to selection. Ecol Lett 11(8):852鈥?66 CrossRef
33. Kirk H, Paul J, Straka J, Freeland JR (2011) Long-distance dispersal and high genetic diversity are implicated in the invasive spread of the common reed, / Phragmites australis (Poaceae), in northeastern North America. Am J Bot 98(7):1180鈥?190
34. Kriticos D, Yonow T, McFadyen R (2005) The potential distribution of / Chromolaena odorata (Siam weed) in relation to climate. Weed Res 45(4):246鈥?54 CrossRef
35. Lakshmi PV, Raju AJS, Ram DJ, Ramana KV (2011) Floral biology, psychophily, anemochory and zoochory in / Chromolaena odorata (L.) King and HE Robins (Asteraceae). Pak J Sci Ind Res 54(1):1鈥?
36. Lavergne S, Molofsky J (2007) Increased genetic variation and evolutionary potential drive the success of an invasive grass. Proc Natl Acad Sci USA 104(10):3883鈥?888 CrossRef
37. Le Roux JJ, Wieczorek AM, Wright MG, Tran CT (2007) Super-genotype: global monoclonality defies the odds of nature. PLoS ONE 2(7):e590 CrossRef
38. Librado P, Rozas J (2009) DNASP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25(11):1451鈥?452 CrossRef
39. Liu J, Dong M, Miao SL, Li ZY, Song MH, Wang RQ (2006) Invasive alien plants in China: role of clonality and geographical origin. Biol Invasions 8(7):1461鈥?470 CrossRef
40. Lowe S, Browne M, Boudjelas S, De Poorter M (2000) 100 of the world鈥檚 worst invasive alien species: a selection from the global invasive species database. Hollands Printing Ltd, Auckland
41. Marrs RA, Sforza R, Hufbauer RA (2008) Evidence for multiple introductions of / Centaurea stoebe micranthos (spotted knapweed, Asteraceae) to North America. Mol Evol 17(19):4197鈥?208
42. McFadyen REC (1989) Siam weed: a new threat to Australia鈥檚 north. Plant Prot Q 4(1):3鈥?
43. McFadyen REC (1993) National report from Australia and the Pacific. Proceedings of the third international workshop on biological control and management of / Chromolaena odorata. Abidjan, Ivory Coast, pp 39鈥?4
44. McFadyen REC (2002) / Chromolaena in Asia and the Pacific: spread continues but control prospects improve. Proceedings of the fifth international workshop on biological control and management of / Chromolaena odorata. Durban, South Africa, pp 13鈥?8
45. McFadyen RC, Skarratt B (1996) Potential distribution of / Chromolaena odorata (siam weed) in Australia, Africa and Oceania. Agric Ecosyst Environ 59(1鈥?):89鈥?6 CrossRef
46. McFadyen REC, Desmier de Chenon R, Sipayung A (2003) Biology and host specificity of the / Chromolaena stem gall fly, / Cecidochares connexa (Macquart) (Diptera: Tephritidae). Aust J Entomol 42(3):294鈥?97 CrossRef
47. M眉ller-Sch盲rer H, Schaffner U, Steinger T (2004) Evolution in invasive plants: implications for biological control. Trends Ecol Evol 19(8):417鈥?22 CrossRef
48. Muniappan R, Bamba J (2000) Biological control of / Chromolaena odorata: successes and failures. Proceedings of the tenth international symposium on biological control of weeds. Montana, USA, pp 81鈥?5
49. Muniappan R, Bamba J, Zachariades C, Strathie L (2002) Host-specificity testing of / Cecidochares connexa, a biological control agent for / Chromolaena odorata. Proceedings of the fifth international workshop on biological control and management of / Chromolaena odorata. Durban, South Africa, pp 134鈥?36
50. Muniappan R, Reddy GVP, Lai PY (2005) Distribution and biological control of / Chromolaena odorata. In: Inderjit I (ed) Invasive plants: ecological and agricultural aspects. Birkh盲user Verlag, Basel, pp 223鈥?33
51. Novak SJ, Mack RN (2005) Genetic bottlenecks in alien plant species: Influence of mating system and introduction dynamics. In: Sax DF, Stachowicz JJ, Gaines SD (eds) Species invasions: insights into ecology, evolution, and biogeography. Sinauer & Associates, Sunderland, pp 210鈥?28
52. Pairon M, Petitpierre B, Campbell M, Guisan A, Broennimann O, Baret PV, Jacquemart AL, Besnard G (2010) Multiple introductions boosted genetic diversity in the invasive range of black cherry ( / Prunus serotina; Rosaceae). Ann Bot 105(6):881鈥?90 CrossRef
53. Paterson ID, Zachariades C (2013) ISSRs indicate that / Chromolaena odorata invading southern Africa originates in Jamaica or Cuba. Biol Control 66(2):132鈥?39 CrossRef
54. Peakall ROD, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6(1):288鈥?95 CrossRef
55. Perdereau E, Bagn猫res AG, Bankhead-Dronnet S, Dupont S, Zimmermann M, Vargo E, Dedeine F (2013) Global genetic analysis reveals the putative native source of the invasive termite, / Reticulitermes flavipes in France. Mol Evol 22(4):1105鈥?119
56. P茅rez JE, Nirchio M, Alfonsi C, Mu帽oz C (2006) The biology of invasions: the genetic adaptation paradox. Biol Invasions 8(5):1115鈥?121 CrossRef
57. Pons O, Petit RJ (1996) Measuring and testing genetic differentiation with ordered versus unordered alleles. Genetics 144(3):1237鈥?245
58. Poulin J, Weller SG, Sakai AK (2005) Genetic diversity does not affect the invasiveness of fountain grass ( / Pennisetum setaceum) in Arizona California and Hawaii. Divers Distrib 11(3):241鈥?47 CrossRef
59. Prentis PJ, Wilson JRU, Dormontt EE, Richardson DM, Lowe AJ (2008) Adaptive evolution in invasive species. Trends Plant Sci 13(6):288鈥?94 CrossRef
60. Prentis PJ, Woolfit M, Thomas-Hall SR, Ortiz-Barrientos D, Pavasovic A, Lowe AJ, Schenk PM (2010) Massively parallel sequencing and analysis of expressed sequence tags in a successful invasive plant. Ann Bot 106(6):1009鈥?017 CrossRef
61. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155(2):945鈥?59
62. Qin RM, Zheng YL, Valiente-Banuet A, Callaway RM, Barclay GF, Pereyra CS, Feng YL (2013) The evolution of increased competitive ability, innate competitive advantages, and novel biochemical weapons act in concert for a tropical invader. New Phytol 197(3):979鈥?88 CrossRef
63. Raimundo RLG, Fonseca RL, Schachetti-Pereira R, Townsend Peterson A, Lewinsohn TM (2007) Native and exotic distributions of siamweed ( / Chromolaena odorata) modeled using the genetic algorithm for rule-set production. Weed Sci 55(1):41鈥?8 CrossRef
64. Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered 86(3):248鈥?49
65. Ren M, Zhang Q, Zhang D (2005) Random amplified polymorphic DNA markers reveal low genetic variation and a single dominant genotype in / Eichhornia crassipes populations throughout China. Weed Res 45(3):236鈥?44 CrossRef
66. Roman J, Darling J (2007) Paradox lost: genetic diversity and the success of aquatic invasions. Trends Ecol Evol 22(9):454鈥?64 CrossRef
67. Sakai AK, Allendorf FW, Holt JS, Lodge DM, Molofsky J, With KA, Baughman S, Cabin RJ, Cohen JE, Ellstrand NC (2001) The population biology of invasive species. Annu Rev Ecol Syst 32:305鈥?32 CrossRef
68. Sang T, Crawford DJ, Stuessy TF (1995) Documentation of reticulate evolution in peonies ( / Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implications for biogeography and concerted evolution. Proc Natl Acad Sci USA 92(15):6813鈥?817 CrossRef
69. Sang T, Crawford DJ, Stuessy TF (1997) Chloroplast DNA phylogeny, reticulate evolution, and biogeography of / Paeonia (Paeoniaceae). Am J Bot 84(8):1120 CrossRef
70. Schmidt GJ, Schilling EE (2000) Phylogeny and biogeography of / Eupatorium (Asteraceae: Eupatorieae) based on nuclear ITS sequence data. Am J Bot 87(5):716鈥?26 CrossRef
71. Scott LJ, Lange CL, Graham GC, Yeates DK (1998) Genetic diversity and origin of siam weed ( / Chromolaena odorata) in Australia. Weed Technol 12(1):27鈥?1
72. Stachowicz JJ, Terwin JR, Whitlatch RB, Osman RW (2002) Linking climate change and biological invasions: ocean warming facilitates nonindigenous species invasions. Proc Natl Acad Sci USA 99(24):15497鈥?5500 CrossRef
73. Stephens M, Donnelly P (2003) A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 73(5):1162鈥?169 CrossRef
74. Stephens M, Smith NJ, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68(4):978鈥?89 CrossRef
75. Tate JA (2002) Systematics and evolution of / Tarasa (Malvaceae): an enigmatic Andean polyploid genus. Dissertation, The University of Texas
76. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25(24):4876鈥?882 CrossRef
77. Tsutsui ND (2000) Reduced genetic variation and the success of an invasive species. Proc Natl Acad Sci USA 97(11):5948鈥?953 CrossRef
78. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4(3):535鈥?38 CrossRef
79. Wang XY, Shen DW, Jiao J, Xu NN, Yu S, Zhou XF, Shi MM, Chen XY (2012) Genotypic diversity enhances invasive ability of / Spartina alterniflora. Mol Evol 21:2542鈥?551
80. Ward SM, Jasieniuk M (2009) Sampling weedy and invasive plant populations for genetic diversity analysis. Weed Sci 57(6):593鈥?02 CrossRef
81. Waterhouse BM (1994) Discovery of / Chromolaena odorata in northern Queensland, Australia. / Chromolaena odorata Newsl 9:1鈥?
82. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358鈥?370 CrossRef
83. White TH, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and amplifications. Academic, San Diego, pp 315鈥?22 CrossRef
84. Wright S (1949) The genetical structure of populations. Ann Eugen 15(1):323鈥?54 CrossRef
85. Ye WH, Mu HP, Cao HL, Ge XJ (2004) Genetic structure of the invasive / Chromolaena odorata in China. Weed Res 44(2):129鈥?35 CrossRef
86. Yu XQ, Li QM (2011) Isolation and characterization of microsatellite markers for a worldwide invasive weed, / Chromolaena odorata (Asteraceae). Am J Bot 98(9):e259鈥揺261 CrossRef
87. Zachariades C, Day M, Muniappan R, Reddy GVP (2009) / Chromolaena odorata (L.) King and Robinson (Asteraceae). In: Muniappan R, Reddy GVP, Raman A (eds) Biological control of tropical weeds using arthropods. Cambridge University Press, Cambridge, pp 130鈥?62 CrossRef
88. Zalucki M, Day M, Playford J (2007) Will biological control of / Lantana camara ever succeed? Patterns, processes and prospects. Biol Control 42(3):251鈥?61 CrossRef
89. Zepeda-Paulo F, Simon JC, Ram铆rez C, Fuentes-Contreras E, Margaritopoulos J, Wilson A, Sorenson C, Briones L, Azevedo R, Ohashi D (2010) The invasion route for an insect pest species: the tobacco aphid in the New World. Mol Evol 19(21):4738鈥?752
90. Zhang YY, Zhang DY, Barrett SCH (2010) Genetic uniformity characterizes the invasive spread of water hyacinth ( / Eichhornia crassipes), a clonal aquatic plant. Mol Evol 19(9):1774鈥?786 - 作者单位：Xiangqin Yu (1) (2)
Tianhua He (3)
Jianli Zhao (4)
Qiaoming Li (1)
1. Laboratory of Plant Phylogenetics and Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, 650223, Yunnan, People鈥檚 Republic of China
2. Graduate University of Chinese Academy of Sciences, Beijing, 100049, People鈥檚 Republic of China
3. Department of Environment and Agriculture, Curtin University, GPO Box U1987, Perth, WA, 6845, Australia
4. The Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, 666303, Yunnan, People鈥檚 Republic of China - ISSN：1573-1464
文摘
Chromolaena odorata is a native of America while a weed in many parts of tropical and subtropical regions in the world. Research into the invasion mechanisms of C. odorata contributes to a broader understanding of factors that facilitate plant adaptation, and also helps developing effective management strategies. In this study, we used three DNA fragments and six microsatellite loci: (1) to compare genetic diversity of C. odorata in its native and invaded regions; (2) to elucidate the invasive routes and identify possible source locations of C. odorata from America to Asia, with attempt to evaluate the possible mechanisms facilitating the successful invasion of this species. Despite two recorded independent introductions, DNA sequence data revealed only one single haplotype of C. odorata present throughout tropical Asia. All six microsatellite loci consistently exhibited extremely low genetic diversity in Asian populations compared to those from native ranges. Our results implied that there was likely only a single introduction to Asia, and Trinidad, Tobago and adjacent areas in the West Indies were the most likely source location of that introduction. The successful invasion of C. odorata in Asia may have been facilitated by the genotype with strong competitive ability.