Mapping and validation of quantitative trait loci associated with wheat yellow mosaic bymovirus resistance in bread wheat

详细信息    查看全文

• 作者：Xiaobiao Zhu (1)
  Haiyan Wang (1)
  Jiao Guo (1)
  Zhenzhen Wu (1)
  Aizhong Cao (1)
  Tongde Bie (2)
  Mingjuan Nie (1)
  Frank M. You (3)
  Zhaobang Cheng (4)
  Jin Xiao (1)
  Yangyang Liu (1)
  Shunhe Cheng (2)
  Peidu Chen (1)
  Xiue Wang (1)
  
• 刊名：Theoretical and Applied Genetics
• 出版年：2012
• 出版时间：January 2012
• 年：2012
• 卷：124
• 期：1
• 页码：177-188
• 全文大小：584KB
• 参考文献：1. Anderson JA, Stack RW, Liu S, Waldron BL, Fjeld AD, Coyne C et al (2001) DNA markers for Fusarium head blight resistance QTLs in two wheat populations. Theor Appl Genet 102:1164-168 CrossRef
  2. Bassam BJ, Gresshoff PM (2007) Silver staining DNA in polyacrylamide gels. Nat Protoc 2:2649-654 CrossRef
  3. Chen JP (2005) Research status and prospect of cereal viruses transmitted by / Polymyxa graminis in China. Proc Natural Sci 15:524-33
  4. Choulet F, Wicker T, Rustenholz C, Paux E, Salse J, Leroy P et al (2010) Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell 22:1686-701 CrossRef
  5. Clover GRG, Henry CM (1999) Detection and discrimination of wheat spindle streak mosaic virus and wheat yellow mosaic virus using multiplex RT-PCR. Eur J Plant Pathol 105:891-96 CrossRef
  6. Devos KM, Atkinson MD, Chinoy CN, Liu CJ, Gale MD (1992) RFLP-based genetic map of the homoeologous group 3 chromosomes of wheat and rye. Theor Appl Genet 83:931-39 CrossRef
  7. Dilbirligi M, Erayman M, Sandhu D, Sidhu D, Gill KS (2004) Identification of wheat chromosomal regions containing expressed resistance genes. Genetics 166:461-81 CrossRef
  8. Doerge RW, Churchill GA (1996) Permutation tests for multiple loci affecting a quantitative character. Genetics 142:285-94
  9. Gupta PK, Roy JK (2002) Molecular markers in crop improvement: present status and future needs in India. Plant Cell Tiss Org Cult 70:229-34 CrossRef
  10. Inouye T (1969) Viral pathogen of the wheat yellow mosaic disease. Nogaku Kenkyu 53:61-8
  11. Jiang G-L, Dong Y, Shi JR, Ward RW (2007a) QTL analysis of resistance to Fusarium head blight in the novel wheat germplasm CJ 9306. II. Resistance to deoxynivalenol accumulation and grain yield loss. Theor Appl Genet 115:1043-052 CrossRef
  12. Jiang G-L, Shi JR, Ward RW (2007b) QTL analysis of resistance to Fusarium head blight in the novel wheat germplasm CJ 9306. I. Resistance to fungal spread. Theor Appl Genet 116:3-3 CrossRef
  13. Khan A, Bergstrom G, Nelson J, Sorrells M (2000) Identification of RFLP markers for resistance to wheat spindle streak mosaic bymovirus (WSSMV) disease. Genome 43:477-82 CrossRef
  14. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12:172-75 CrossRef
  15. Krattinger SG, Lagudah ES, Spielmeyer W, Singh RP, Huerta-Espino J, McFadden H et al (2009) A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat. Science 323:1360-363 CrossRef
  16. Liu WH, He ZT, Geng B, Hou MS, Zhang M, Nie H et al (2004) Identification of resistance to yellow mosaic disease of wheat and analysis for its inheritance of some varieties. Acta Phytopathol Sin 34:542-47
  17. Liu WH, Nie H, He ZT, Chen XL, Han YP, Wang JR et al (2005a) Mapping of a wheat resistance gene to yellow mosaic disease by amplified fragment length polymorphism and simple sequence repeat markers. J Integr Plant Biol 47:1133-139 CrossRef
  18. Liu WH, Nie H, Wang SB, Li X, He ZT, Han CG et al (2005b) Mapping a resistance gene in wheat cultivar Yangfu 9311 to yellow mosaic virus, using microsatellite markers. Theor Appl Genet 111:651-57 CrossRef
  19. Mangin B, Goffinet B, Rebai A (1994) Constructing confidence intervals for QTL location. Genetics 138:1301-308
  20. Nishio Z, Kojima H, Hayata A, Iriki N, Tabiki T, Ito M et al (2010) Mapping a gene conferring resistance to wheat yellow mosaic virus in European winter wheat cultivar‘Ibis- / Triticum aestivum L.). Euphytica 176:223-29 CrossRef
  21. Ordon F, Habekuss A, Kastirr U, Rabenstein F, Kühne T (2009) Virus resistance in cereals: sources of resistance, genetics and breeding. J Phytopathol 157:535-45 CrossRef
  22. Paillard S, Schnurbusch T, Winzeler M, Messmer M, Sourdille P, Abderhalden O et al (2003) An integrative genetic linkage map of winter wheat ( / Triticum aestivum L.). Theor Appl Genet 107:1235-242 CrossRef
  23. Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, Leroy P et al (2008) A physical map of the 1-gigabase bread wheat chromosome 3B. Science 322:101-04 CrossRef
  24. Pestsova E, Salina E, B?rner A, Korzun V, Maystrenko OI, R?der MS (2000) Microsatellites confirm the authenticity of inter-varietal chromosome substitution lines of wheat ( / Triticum aestivum L.). Theor Appl Genet 101:95-9 CrossRef
  25. Qi LL, Echalier B, Chao S, Lazo GR, Butler GE, Anderson OD et al (2004) A chromosome bin map of 16, 000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat. Genetics 168:701-12 CrossRef
  26. Qian CM, Zhou CF, Yao GC, Yao JB, Sheng PY, Yang XM (1999) Breeding and application of a new wheat variety, Ningmai 9. Jiangsu Agric Sci 3:19-0
  27. Qin JZ, Li ZM, Tao JF, Qin Y (1986) Primary study on resistance inheritance to yellow mosaic disease of wheat. J Sichuan Agric Univ 4:17-8
  28. Ren L-J, Zhang X, Zhou M-P, Chen Q-B, Ma H-X (2008) Heritability of resistance to wheat spindle streak mosaic virus. J Triticeae Crops 28:154-59
  29. R?der MS, Korzun V, Gill BS, Ganal MW (1998) The physical mapping of microsatellite markers in wheat. Genome 41:278-83 CrossRef
  30. Ruan YL, Zou WH, Chen JP (1991) Simple extraction method for the resting spores of / Polymyxa graminis. Acta Agric Zhejiangensis 3:65-7
  31. Sawada E (1927) Wheat yellow mosaic prevention. J Plant Protect (Byochugai-Zasshi) 14:444-49
  32. Sharp PJ, Kreis M, Shewry PR, Gale MD (1988) Location of / β-amylase sequences in wheat and its relatives. Theor Appl Genet 75:286-90 CrossRef
  33. Slykhuis JT (1960) Evidence of soil-borne mosaic of wheat in Ontario. Can J Plant Dis Surv 40:43
  34. Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat ( / Triticum aestivum L.). Theor Appl Genet 109:1105-114 CrossRef
  35. Song QJ, Shi JR, Singh S, Fickus EW, Costa JM, Lewis J et al (2005) Development and mapping of microsatellite (SSR) markers in wheat. Theor Appl Genet 110:550-60 CrossRef
  36. Van Koevering M, Haufler KZ, Fulbright DW, Isleib TG, Everson EH (1987) Heritability of resistance in winter wheat to wheat spindle streak mosaic virus. Phytopathology 77:742-44 CrossRef
  37. Van Ooijen JW (2006) JoinMap 4.0. Software for the calculation of genetic linkage maps in experimental populations. Kyazma BV, Wageningen
  38. Wang S, Basten CJ, Zeng Z-B (2006) Windows QTL Cartographer V2.5. User manual. Bioinformatics Research Centre, North Carolina State University, Raleigh
  39. Wiese MV, Ravenscroft AV, Everson EH (1974) Incidence of wheat spindle streak mosaic among ten wheat cultivars and its effect on yield. Plant Dis Rep 58:522-25
  40. Xue SL, Zhang ZZ, Lin F, Kong Z, Cao Y, Li CJ et al (2008) A high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags. Theor Appl Genet 117:181-89 CrossRef
  41. Yan W, Cai SB, Wu JZ, Ren LJ, Zhang XY, Wu XY (2008) Molecular marker analysis and preliminary QTL mapping for wheat spindle streak mosaic bymovirus resistance. J Triticeae Crops 28:900-04
  42. Yang J, Zhu J, Williams RW (2007) Mapping the genetic architecture of complex traits in experimental populations. Bioinformatics 23:1527-536 CrossRef
  43. Yang J, Hu CC, Hu H, Yu RD, Xia Z, Ye XZ et al (2008) QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics 24:721-23 CrossRef
  44. Yao JB, Yang XM, Yao GC, Wang JY, Huang SD, Qian CM et al (1999) Inheritance of resistance to spindle streak mosaic virus in wheat varieties. Jiangsu Agric Res 20:12-5
  45. Yao JB, Yao GC, Yang XM, Ma HX, Zhang P, Zhang PP (2009) Breeding and cultural practices of a new high yield and quality wheat cultivar, Ningmai 16. Jiangsu Agric Sci 3:98-9
  46. Yu JL, Yan LY, Su N, Huo ZJ, Li DW, Han CG et al (1999) Analysis of nucleotide sequence of wheat yellow mosaic virus genomic RNAs. Sci China (Ser C) 42:554-60 CrossRef
  47. Zeng Z-B (1993) Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc Natl Acad Sci USA 90:10972-0976 CrossRef
  48. Zeng Z-B (1994) Precision mapping of quantitative trait loci. Genetics 136:1457-468
  49. Zhang BQ (2009) Utilizing rolling convergent backcross method to breed new wheat variety Yangmai 18 with powdery mildew resistance. Chinese Agric Sci Bullet 25:74-7
  50. Zhou YJ, Cheng ZB, Hou QS, Fan YJ, Wu SH (2000) Resistance of wheat varieties to wheat spindle streak mosaic disease. Acta Phytophyl Sin 27:102-06
  
• 作者单位：Xiaobiao Zhu (1)
  Haiyan Wang (1)
  Jiao Guo (1)
  Zhenzhen Wu (1)
  Aizhong Cao (1)
  Tongde Bie (2)
  Mingjuan Nie (1)
  Frank M. You (3)
  Zhaobang Cheng (4)
  Jin Xiao (1)
  Yangyang Liu (1)
  Shunhe Cheng (2)
  Peidu Chen (1)
  Xiue Wang (1)
  
  1. State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cytogenetics Institute, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
  2. Department of Wheat Breeding, Agricultural Sciences Institute of the Lixiahe District, Yangzhou, 225007, Jiangsu, China
  3. Department of Plant Sciences, University of California, Davis, CA, 95616, USA
  4. Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, Jiangsu, China
  
• ISSN：1432-2242

文摘

Wheat yellow mosaic (WYM) caused by wheat yellow mosaic bymovirus (WYMV) has been growing as one of the most serious diseases affecting wheat production in China. In this study, the association of quantitative trait loci (QTLs) governing WYMV resistance with molecular markers was established using 164 recombinant inbred lines (RILs) derived from ‘Xifeng Wheat-(highly resistant)?×?‘Zhen 9523-(highly susceptible). Phenotypic data of WYMV resistance of the RILs were collected from 4-year, two-location replicated field trials. A molecular marker-based linkage map, which was comprised of 273 non-redundant loci and represented all the 21 wheat chromosomes, was constructed with the JoinMap 4.0 software. Using the Windows QTL Cartographer V2.5 software, three QTLs associated with WYMV resistance, QYm.njau-3B.1, QYm.njau-5A.1 and QYm.njau-7B.1, were detected on chromosomes 3BS, 5AL, and 7BS, respectively. The favorable allele effects were all contributed by ‘Xifeng Wheat- Among the three QTLs, QYm.njau-3B.1 and QYm.njau-5A.1 were detected in all the four trials and the overall mean, and could explain 3.3-0.2% and 25.9-3.7% of the phenotypic variation, respectively, while QYm.njau-7B.1 was detected in one trial and the overall mean and explained 4.9 and 3.3% of the phenotypic variation, respectively. A large portion of the variability for WYMV response was explained by a major QTL, QYm.njau-5A.1. The relationship of the molecular markers linked with QYm.njau-5A.1 and the WYMV resistance was further validated using a secondary F2 population. The results showed that three markers, i.e., Xwmc415.1, CINAU152, and CINAU153, were closely linked to QYm.njau-5A.1 with the genetic distances of 0.0, 0.0, and 0.1?cM, respectively, indicating they should be useful in marker-assisted selection (MAS) wheat breeding for WYMV resistance. A panel of germplasm collection consisting of 46 wheat varieties with known WYMV response phenotypes was further used to validate the presence and effects of QYm.njau-5A.1 and the above three markers. It was found that QYm.njau-5A.1 was present in 12 of the 34 WYMV-resistant varieties.