Micromonospora violae sp. nov., isolated from a root of Viola philippica Car

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• 作者：Yuejing Zhang (1)
  Hui Liu (1)
  Xinhui Zhang (1)
  Shurui Wang (1)
  Chongxi Liu (1)
  Chao Yu (2)
  Xiangjing Wang (1)
  Wensheng Xiang (1) (2)
  
• 关键词：Micromonospora violae sp. nov. ; 16S rRNA gene ; gyrB gene ; Polyphasic taxonomy
• 刊名：Antonie van Leeuwenhoek
• 出版年：2014
• 出版时间：August 2014
• 年：2014
• 卷：106
• 期：2
• 页码：219-225
• 全文大小：579 KB
• 参考文献：1. Ara I, Kudo T (2007) Two new species of the genus / Micromonospora: / Micromonospora chokoriensis sp. nov. and / Micromonospora coxensis sp. nov., isolated from sandy soil. J Gen Appl Microbiol 53(1):29-7 CrossRef
  2. Collins MD (1985) Isoprenoid quinone analyses in bacterial classification and identification. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 267-84
  3. De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12(1):133-42 CrossRef
  4. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17(6):368-76 CrossRef
  5. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39(4):783-91 CrossRef
  6. Gao RX, Liu CX, Zhao JW, Jia FY, Yu C, Yang LY, Wang XJ, Xiang WS (2014) / Micromonospora jinlongensis sp. nov., isolated from muddy soil in China and emended description of the genus / Micromonospora. Antonie Van Leeuwenhoek 105(2):307-15 CrossRef
  7. Garcia LC, Martínez-Molina E, Trujillo ME (2010) / Micromonospora pisi sp. nov., isolated from root nodules of / Pisum sativum. Int J Syst Evol Microbiol 60(2):331-37 CrossRef
  8. Gordon RE, Barnett DA, Handerhan JE, Pang C (1974) / Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24(1):54-3 CrossRef
  9. Hayakawa M, Nonomura H (1987) Humic acid-vitamin agar, a new medium for selective isolation of soil actinomycetes. J Ferment Technol 65(5):501-09 CrossRef
  10. Huss VAR, Festl H, Schleifer KH (1983) Studies on the spectrometric determination of DNA hybridisation from renaturation rates. Syst Appl Microbiol 4(2):184-92 CrossRef
  11. Jia FY, Liu CX, Wang XJ, Zhao JW, Liu QF, Zhang J, Gao RX, Xiang WS (2013) / Wangella harbinensis gen. nov., sp. nov., a new member of the family / Micromonosporaceae. Antonie Van Leeuwenhoek 103(2):399-08 CrossRef
  12. Jones KL (1949) Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57(2):141-45
  13. Kelly KL (1964) Inter-Society Color Council–National Bureau of Standards color-name charts illustrated with centroid colors published in US
  14. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716-21 CrossRef
  15. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16(2):111-20 CrossRef
  16. Lechevalier MP, Lechevalier HA (1980) The chemotaxonomy of actinomycetes. In: Dietz A, Thayer WD (eds) Actinomycete taxonomy. Special publication no. 6. Society for Industrial Microbiology, Arlington, pp 277-84
  17. Lee YK, Kim HW, Liu CL, Lee HK (2003) A simple method for DNA extraction from marine bacteria that produce extracellular materials. J Microbiol Methods 52(2):245-50 CrossRef
  18. Loqman S, Barka EA, Clément C, Ouhdouch Y (2009) Antagonistic actinomycetes from Moroccan soil to control the grapevine gray mold. World J Microbiol Biotechnol 25(1):81-1 CrossRef
  19. Mandel M, Marmur J (1968) Use of ultraviolet absorbance-temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12:195-06 CrossRef
  20. McKerrow J, Vagg S, McKinney T, Seviour EM, Maszenan AM, Brooks P, Seviour RJ (2000) A simple HPLC method for analysing diaminopimelic acid diastereomers in cell walls of Gram-positive bacteria. Lett Appl Microbiol 30(3):178-82 CrossRef
  21. Minnikin DE, Hutchinson IG, Caldicott AB, Goodfellow M (1980) Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr 188(1):221-33 CrossRef
  22. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal K, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2(5):233-41 CrossRef
  23. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406-25
  24. Shirling EB, Gottlieb D (1966) Methods for characterization of / Streptomyces species. Int J Syst Bacteriol 16:313-40 CrossRef
  25. Su X, Sun K, Chen W, Zhang H, Ma RJ (2009) Molecular identification and genetic relationship between / Viola yedoensis with its related species by RAPD. J Tradit Chin Vet Med 28:8-0
  26. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731-739 CrossRef
  27. Trujillo ME, Fernández-Molinero C, Velázquez E, Kroppenstedt RM, Schumann P, Mateos PF, Martínez-Molina E (2005) / Micromonospora mirobrigensis sp. nov. Int J Syst Evol Microbiol 55(2):877-80 CrossRef
  28. Trujillo ME, Kroppenstedt RM, Fernández-Molinero C, Schumann P, Martínez-Molina E (2007) / Micromonospora lupini sp. nov. and / Micromonospora saelicesensis sp. nov., isolated from root nodules of / Lupinus angustifolius. Int J Syst Evol Microbiol 57(12):2799-804 CrossRef
  29. Waksman SA (1961) The / Actinomycetes, vol 2., Classification, identification and descriptions of genera and species. Battimore: Williams & Wilkins
  30. Wang XJ, Zhao JW, Liu CX, Wang JD, Shen Y, Jia FY, Wang L, Zhang J, Yu C, Xiang WS (2013) / Nonomuraea solani sp. nov., a novel actinomycete isolated from eggplant root ( / Solanum melongena L.). Int J Syst Evol Microbiol 63(Pt 7):2418-423 CrossRef
  31. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE et al (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-64 CrossRef
  32. Williams ST, Goodfellow M, Alderson G, Wellington EMH, Sneath PHA, Sackin MJ (1983) Numerical classification of / Streptomyces and related genera. J Gen Microbiol 129(6):1743-813
  33. Zhang BF (2008) Progress on studies of herba Violae. I J. Yichun Coll 30:88-0
  34. Zhang YY, Hou HC, Yang JY (2010) Comparison and identification of / Violea herba and its adulterants. Modern Chinese Medicine 12:25-7
  35. Zhang YJ, Zhao JW, Liu CX, Shen Y, Jia FY, Wang XJ, Xiang WS (2014) / Nonomuraea shaanxiensis sp. nov., a novel actinomycete isolated from a soil sample. Antonie Van Leeuwenhoek 105(1):57-4 CrossRef
  
• 作者单位：Yuejing Zhang (1)
  Hui Liu (1)
  Xinhui Zhang (1)
  Shurui Wang (1)
  Chongxi Liu (1)
  Chao Yu (2)
  Xiangjing Wang (1)
  Wensheng Xiang (1) (2)
  
  1. Key Laboratory of Agriculture Biological Functional Gene of Heilongjiang Provincial Education Committee, Northeast Agricultural University, No. 59 Mucai Street, Xiangfang District, Harbin, 150030, People’s Republic of China
  2. State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, People’s Republic of China
  
• ISSN：1572-9699

文摘

A novel actinomycete, designated strain NEAU-zh8T, was isolated from a root of Viola philippica Car collected in China and characterized using a polyphasic approach. 16S rRNA gene sequence similarity studies showed that strain NEAU-zh8T belongs to the genus Micromonospora, being most closely related to Micromonospora chokoriensis 2-9(6)T (99.9?%), Micromonospora saelicesensis Lupac 09T (99.3?%) and Micromonospora lupini Lupac 14NT (99.0?%). gyrB gene analysis also indicated that strain NEAU-zh8T should be assigned to the genus Micromonospora. The cell-wall peptidoglycan consisted of meso-diaminopimelic acid and glycine. The major menaquinones were MK-10(H4), MK-10(H2) and MK-10(H6). The phospholipid profile contained diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol. The major fatty acids were iso-C15:0, C16:0 and C17:0 10-methyl. A combination of DNA–DNA hybridization results and some physiological and biochemical properties indicated that strain NEAU-zh8T could be readily distinguished from the closest phylogenetic relatives. Therefore, it is proposed that strain NEAU-zh8T represents a novel Micromonospora species, for which the name Micromonospora violae sp. nov. is proposed. The type strain is NEAU-zh8T (=CGMCC 4.7102T=DSM 45888T).