Integrative diagnosis and molecular phylogeny of dagger and needle nematodes of olives and grapevines in the island of Crete, Greece, with description of Xiphinema cretense n. sp. (Nematoda, Longidoridae)
详细信息    查看全文
  • 作者：Emmanuel A. Tzortzakakis ; Antonio Archidona-Yuste…
  • 关键词：Bayesian inference ; Longidorids ; Longidorus ; Maximum likelihood ; rDNA ; New geographic record ; Xiphinema
  • 刊名：European Journal of Plant Pathology
  • 出版年：2014
  • 出版时间：November 2014
  • 年：2014
  • 卷：140
  • 期：3
  • 页码：563-590
  • 全文大小：2,980 KB
  • 参考文献：1. Altherr, E. (1974). Nématodes de la nappe phréatique du réseau fluvial de la Saale (Thuringe) II. / Limnologica, 9, 81-32.
    2. Altherr, E. (1976). La faune des eaux profondes interstitielles de la région de Wiesbaden. / Bulletin de la Société Vaudoise des Sciences Naturelles, 73, 97-16.
    3. Barsi, L. (1994). Species of the / Xiphinema americanum-group (Nematoda: Dorylaimida) on the territory of the former Yugoslavia. / Nematologia Mediterranea, 22, 25-4.
    4. Barsi, L., Lamberti, F., & Agostinelli, A. (1998). / Xiphinema densispinatum sp. n. From Bosnia and Herzegovina and / X. montenegrinum sp. n. From Montenegro, Yugoslavia (Nematoda: Dorylaimida). / Nematologia Mediterranea, 26, 67-7.
    5. Barsi, L., & Lamberti, F. (2002). Morphometrics of three putative species of the / Xiphinema americanum group (Nematoda: Dorylaimida) from the territory of the former Yugoslavia. / Nematologia Mediterranea, 30, 59-2.
    6. Barsi, L., & Lamberti, F. (2004). Morphometrics of / Longidorus juvenilis and first record of / L. aetnaeus and / L. moesicus (Nematoda: Dorylaimida) from Serbia. / Nematologia Mediterranea, 32, 5-4.
    7. Bravo, M. A., & Roca, F. (1995). / Xiphinema cadavalense sp. n. (Nemata: Longidoridae) from Portugal. / Fundamental and Applied Nematology, 18, 17-0.
    8. Brown, D. J. F., & Boag, B. (1988). An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples. / Nematologia Mediterranea, 16, 93-9.
    9. Brown, D. J. F., Neilson, R., Connolly, T., & Boag, B. (1997). An assessment of morphometric variability between populations of / Longidorus vineacola Sturhan & Weischer, 1964 (Nematoda: Longidoridae) and morphologically related species. / Systematic Parasitology, 37, 93-03. CrossRef
    10. Brown, D. J. F., & Taylor, C. E. (1987). Comments on the occurrence and geographical distribution of longidorid nematodes in Europe and the Mediterranean region. / Nematologia Mediterranea, 15, 333-73.
    11. Castillo, P., Vovlas, N., Subbotin, S., & Troccoli, A. (2003). A new root-knot nematode, / Meloidogyne baetica n. sp. (Nematoda: Heteroderidae), parasitizing wild olive in Southern Spain. / Phytopathology, 93, 1093-102. CrossRef
    12. Chen, Q. W., Hooper, D. J., Loof, P. A. A., & Xu, J. (1997). A revised polytomous key for the identification of species of the genus / Longidorus Micoletzky, 1922 (Nematoda: Dorylaimoidea). / Fundamental and Applied Nematology, 20, 15-8.
    13. Coiro, M. I., Lamberti, F., Vindimian, M. E., & Agostinelli, A. (1988). I longidoridae nei vigneti del Trentino. I: Il genere / Longidorus (Micoletzky) Filipjev. / Nematologia Mediterranea, 16, 53-8.
    14. Coomans, A., & Heyns, J. (1997). Three species of the / Xiphinema americanum-group (Nematoda: Longidoridae) from Kenya. / Nematologica, 43, 259-74. CrossRef
    15. Darriba, D., Taboada, G. L., Doallo, R., & Posada, D. (2012). jModelTest 2: more models, new heuristics and parallel computing. / Nature Methods, 9, 772. CrossRef
    16. De Luca, F., Reyes, A., Grunder, J., Kunz, P., Agostinelli, A., De Giorgi, C., & Lamberti, F. (2004). Characterization and sequence variation in the rDNA region of six nematode species of the genus / Longidorus (Nematoda). / Journal of Nematology, 36, 147-52.
    17. Decraemer, W., & Robbins, R. T. (2007). The who, what and where of longidoridae and trichodoridae. / Journal of Nematology, 39, 295-97.
    18. Flegg, J. J. M. (1967). Extraction of / Xiphinema and / Longidorus species from soil by a modification of Cobb’s decanting and sieving technique. / Annals of Applied Biology, 60, 429-37. CrossRef
    19. Gutiérrez-Gutiérrez, C., Cantalapiedra-Navarrete, C., Montes-Borrego, M., Palomares-Rius, J. E., & Castillo, P. (2013a). Molecular phylogeny of the nematode genus / Longidorus (Nematoda: Longidoridae) with description of three new species. / Zoological Journal of the Linnean Society, 167, 473-00. CrossRef
    20. Gutiérrez-Gutiérrez, C., Cantalapiedra-Navarrete, C., Remesal, E., Palomares-Rius, J. E., Navas-Cortés, J. A., & Castillo, P. (2013b). New insight into the identification and molecular phylogeny of dagger nematodes of the genus / Xiphinema (Nematoda: Longidoridae) with description of two new species. / Zoological Journal of the Linnean Society, 169, 548-79. CrossRef
    21. Gutiérrez-Gutiérrez, C., Castillo, P., Cantalapiedra-Navarrete, C., Landa, B. B., Derycke, S., & Palomares-Rius, J. E. (2011a). Genetic structure of / Xiphinema pachtaicum and / X. index populations based on mitochondrial DNA variation. / Phytopathology, 101, 1168-175. CrossRef
    22. Gutiérrez-Gutiérrez, C., Palomares-Rius, J. E., Cantalapiedra-Navarrete, C., Landa, B. B., Esmenjaud, D., & Castillo, P. (2010). Molecular analysis and comparative morphology to resolve a complex of cryptic / Xiphinema species. / Zoologica Scripta, 39, 483-98. CrossRef
    23. Gutiérrez-Gutiérrez, C., Palomares-Rius, J. E., Cantalapiedra-Navarrete, C., Landa, B. B., & Castillo, P. (2011b). Prevalence, polyphasic identification, and molecular phylogeny of dagger and needle nematodes infesting vineyards in southern Spain. / European Journal of Plant Pathology, 129, 427-53. CrossRef
    24. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. / Nucleic Acids Symposium Series, 41, 95-8.
    25. He, Y., Subbotin, S., Rubtsova, T. V., Lamberti, F., Brown, D. J. F., & Moens, M. (2005). A molecular phylogenetic approach to Longidoridae (Nematoda: Dorylaimida). / Nematology, 7, 111-24. CrossRef
    26. Heyns, J. (1969). / Longidorus cohni n sp., a nematode parasite of alfalfa and Rhodes grass in Israel. / The Israel Journal of Agricultural Research, 19, 179-83.
    27. Huelsenbeck, J. P., & Ronquist, F. (2001). MrBAYES: Bayesian inference of phylogenetic trees. / Bioinformatics, 17, 754-55. CrossRef
    28. Jairajpuri, M. S., & Ahmad, W. (1992). / Dorylaimida. Freeliving, predaceous and plant-parasitic nematodes (p. 458). New Delhi: IBH Publishing Co.
    29. Jones, J. T., Haegeman, A., Dancin, E. G. J., Gaur, H. S., Helder, J., Jones, M. G. K., Kikuchi, T., Manzanilla-López, R., Palomares-Rius, J. E., Wesemael, W. M. L., & Perry, R. N. (2013). Top 10 plant-parasitic nematodes in molecular plant pathology. / Molecular Plant Pathology, 14, 946-61. CrossRef
    30. Katoh, K., Misawa, K., Kuma, K., & Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. / Nucleic Acids Resources, 30, 3059-066. CrossRef
    31. Kirjanova, E. S. (1951). Soil nematodes found in cotton fields and in virgin soil of Golodnaya Steppe (Uzbekistan). / Trudy Zoologie Institute Akademie Nauk SSSR, 9, 625-57.
    32. Krnjaic, D., Lamberti, F., Krnjaic, S., Agostinelli, A., & Radicci, V. (2002). Longidoridae (Nematoda) occurring in the Topchider park of Belgrade, Serbia, with the description of / Paralongidorus serbicus sp. n. / Nematologia Mediterranea, 30, 185-00.
    33. Kumari, S. (2006). / Xiphinema simile (Nematoda: Longidoridae) in the Czech Republic and a note on other / Xiphinema species. / Helminthologia, 43, 43-0. CrossRef
    34. Kumari, S., & Cesare, A. (2013). Nicotinamide dehydrogenase subunit 4 analysis of / Xiphinema diversicaudatum and / Xiphinema simile (Nematoda: Longidoridae). / European Journal of Plant Pathology, 137, 525-34. CrossRef
    35. Lamberti, F., Choleva, B., & Agostinelli, A. (1983). Longidoridae from Bulgaria (Nematoda, Dorylaimida) with description of three new species of Longidorus and two new species of Xiphinema. / Nematologia Mediterranea, 11, 49-2.
    36. Lamberti, F., Roca, F., & Agostinelli, A. (1989). / Xiphinema macroacanthum (Nematoda: Dorylaimida) a new species from southern Italy closely resembling / X. ingens Luc et Dalmasso. / Nematologia Mediterranea, 17, 115.
    37. Lamberti, F., Vouyoukalou, E., & Agostinelli, A. (1996). Longidorids (Nematoda: Dorylaimoidea) occurring in the rhizosphere of olive trees in Western Crete, Greece. / Nematologia Mediterranea, 24, 79-5.
    38. Lamberti, F., Molinari, S., Moens, M., & Brown, D. J. F. (2000). The / Xiphinema americanum group. I. Putative species, their geographical occurrence and distribution, and regional polytomous identification keys for the group. / Russian Journal of Nematology, 8, 65-4.
    39. Lamberti, F., Hockland, S., Agostinelli, A., Moens, M., & Brown, D. J. F. (2004). The / Xiphinema americanum group. III. Keys to species identification. / Nematologia Mediterranea, 32, 53-6.
    40. Lisková, M., & Brown, D. J. F. (1996). Taxonomic validity and ecological relations of / Xiphinema pachtaicum and / X. simile (Nematoda: Dorylaimida), two members of the / X. americanum group occurring in Slovakia. / Helminthologia, 33, 137-42.
    41. Loof, P. A. A. (1982). Two new species of Longidoridae (Dorylaimida) from Saudi Arabia. / Nematologica, 28, 307-17. CrossRef
    42. Loof, P. A. A., Luc, M., & Baujard, P. (1996). A revised polytomous key for the identification of species of the genus / Xiphinema cobb, 1913 (Nematoda: Longidoridae) with exclusion of the / X. americanum-group: Supplement 2. / Systematic Parasitology, 33, 23-9.
    43. Loof, P. A. A., & Chen, Q. (1999). A revised polytomous key for the identification of the species of the genus / Longidorus Micoletzky, 1922 (Nematoda: Dorylaimoidea). Supplement 1. / Nematology, 1, 55-9. CrossRef
    44. Loof, P. A. A., & Coomans, A. (1972). The oesophageal gland nuclei of Longidoridae (Dorylaimida). / Nematologica, 18, 213-33. CrossRef
    45. Loof, P. A. A., & Luc, M. (1990). A revised polytomous key for the identification of species of the genus / Xiphinema Cobb, 1913 (Nematoda: Longidoridae) with exclusion of the / X. americanum-group. / Systematic Parasitology, 16, 36-6. CrossRef
    46. Luc, M., Brown, D. J. F., & Cohn, E. (1982). / Xiphinema israeliae n. sp. (Nematoda: Dorylaimoidea). / Revue de Nématologie, 5, 233-39.
    47. Luc, M., & Coomans, A. (1988). / Xiphinema smoliki n. sp. and / Longidorus pawneenis n. sp. Nemata: Longidoridae from Colorado, USA. / Revue de Nématologie, 2, 137-42.
    48. Meyl, A. H. (1953). Beitrage zur Kenntnis der Nematodenfauna vulkanisch erhitzter biotope. 1. Mitt., die terrikolen nematoden in bereich von fumarolen auf der insel ischia. / Zeitschrift fuer Morphologie und Okologie der Tiere, 42, 67-16. CrossRef
    49. Navas, A., Bello, A., & Arias, M. (1988). Ecology and potential distribution of / Xiphinema diversicaudatum and / X. pachtaicum (Nematoda: Longidoridae) in continental Spain. / Nematologica, 34, 314-30. CrossRef
    50. Page, R. D. (1996). TreeView: an application to display phylogenetic trees on personal computers. / Computer Applications in the Biosciences, 12, 357-58.
    51. Palomares-Rius, J. E., Landa, B. B., Tanha Maafi, Z., Hunt, D. J., & Castillo, P. (2010). Comparative morphometrics and ribosomal DNA sequence analysis of / Longidorus orientalis Loof, 1983 (Nematoda: Longidoridae) from Spain and Iran. / Nematology, 12, 631-40. CrossRef
    52. Palomares-Rius, J. E., Subbotin, S. A., Landa, B. B., Vovlas, N., & Castillo, P. (2008). Description and molecular characterisation of / Paralongidorus litoralis sp. n. and / P. paramaximus Heyns, 1965 (Nematoda: Longidoridae) from Spain. / Nematology, 10, 87-01. CrossRef
    53. Peneva, V., & Choleva, B. (1992). Nematodes of the family Longidoridae from forest nurseries in Bulgaria. II. The genus / Xiphinema Cobb, 1913. / Helminthology, 32, 46-8.
    54. Peneva, V., Orion, D., Shlevin, E., Bar-Eyal, M., & Brown, D. J. F. (1998). / Longidorus israelensis sp. n. (Nematoda: Dorylaimoidea) a parasite of carrot in Israel. / Fudamental and Applied Nematology, 21, 715-21.
    55. Roca, F., & Lamberti, F. (1994). I longidoridae (Nematoda, Dorylaimida) delle regioni italiane. Xiv.Il friuli-venezia giula. / Nematologia Mediterranea, 22, 89-00.
    56. Roca, F., Lamberti, F., & Agostinelli, A. (1989). I Longidoridae (Nematoda, Dorylaimida) delle rigioni italiane. IX. La Sicilia. The Logidoridae (Nematdoa, Dorylaimida) of the Italian Regions. IX. Sicily. / Nematologia Mediterranea, 17, 151.
    57. Sasser, J. N., & Freckman, D. W. (1987). A world perspective on nematology: the role of the society. In J. A. Veech & D. W. Dickson (Eds.), / Vistas on nematology: a commemoration of the twenty-fifth anniversary of the society of nematologists (pp. 7-4). Maryland: Society of Nematologists.
    58. Seinhorst, J. W. (1966). Killing nematodes for taxonomic study with hot f.a. 4:1. / Nematologica, 12, 178. CrossRef
    59. Sirca, S., & Urek, G. (2009). Morphological and molecular characterization of six / Longidorus species (Nematoda: Longidoridae) from Slovenia. / Russian Journal of Nematology, 17, 95-05.
    60. Stoyanov, D. (1964). A contribution to the nematofauna of the grapevine. / Rastitelna Zashtita Sofia, 12, 16-4.
    61. Sturhan, D., & Argo, D. (1983). Studies on / Longidorus closelongatus Stoyanov and L. cohni Heyns, with description of / L. proximus sp. nov. (Nematoda, Dorylaimida). / Revue de Nématologie, 6, 57-4.
    62. Sturhan, D., & Barooti, S. (1983). / Longidorus iranicus n sp. (Nematoda: Dorylaimida). / Systematic Parasitology, 5, 21-4. CrossRef
    63. Swofford, D. L. (2003). / PAUP*. phylogenetic analysis using parsimony (*and other methods), version 4.0b 10. Sunderland: Sinauer Associates.
    64. Taylor, C. E., & Brown, D. J. F. (1997). / Nematode vectors of plant viruses (p. 296). Wallingford: CABI.
    65. Thorne, G., & Allen, M. W. (1950). / Paratylenchus hamatus n. sp. and / Xiphinema index n. sp., two nematodes associated with fig roots with a note on / Paratylenchus anceps Cobb. / Proc. Helminthological Society of Washington, 17, 27-5.
    66. Tulaganov, A. T. (1938). The fauna of nematodes of cotton and surrounding soil in Katta-Kurgan district of the Uzbeck SSE. / Tr Uzbekskistan Gos. University, 12, 1-5.
    67. Tzortzakakis, E. A. (2012). On the occurrence of / Xiphinema index Thorne et Allen in grapevine areas of the Heraklion, province, Crete, Greece. / Nematologia Mediterranea, 40, 67-8.
    68. Tzortzakakis, E. A., Peneva, V., Terzakis, M., Neilson, R., & Brown, D. J. F. (2001). / Longidorus cretensis n. sp. (Nematoda: Longidoridae) from a vineyard infected with a foliar ‘yellow mosaic-on Crete, Greece. / Systematic Parasitology, 48, 131-39. CrossRef
    69. Villate, L. (2008). / Origine, variabilité et gestion des populations de Xiphinema index, le nématode vecteur du Grapevine fanleaf virus (GFLV). Rennes: PhD. Université de Rennes.
    70. Vovlas, N., & Avgelis, A. (1988). Occurrence and distribution of / Xiphinema species in vineyards of the Heraklion Province, Crete (Greece). / Nematologia Mediterranea, 16, 197-00.
    71. Wang, X., Bosselut, N., Castagnone, C., Voisin, R., Abad, P., & Esmenjaud, D. (2003). Multiplex polymerase chain reaction identification of single individuals of the Longidorid nematodes / Xiphinema index, / X. diversicaudatum, / X. vuittenezi, and / X. italiae using specific primers from ribosomal genes. / Phytopathology, 93, 160-66. CrossRef
    72. Ye, W., Szalanski, A. L., & Robbins, R. T. (2004). Phylogenetic relationships and genetic variation in / Longidorus and / Xiphinema species (Nematoda: Longidoridae) using ITS1 sequences of nuclear ribosomal DNA. / Journal of Nematology, 36, 14-9.
    73. Yoder, M., Tandingan de Ley, I., King, I. W., Mundo-Ocampo, M., Mann, J., Blaxter, M., Poiras, L., & De Ley, P. (2006). DESS: a versatile solution for preserving morphology and extractable DNA of nematodes. / Nematology, 8, 367-76. CrossRef
  • 作者单位：Emmanuel A. Tzortzakakis (1)
    Antonio Archidona-Yuste (2)
    Carolina Cantalapiedra-Navarrete (2)
    Eleni Nasiou (1)
    Maria S. Lazanaki (1)
    Emmanouil M. Kabourakis (3)
    Juan E. Palomares-Rius (2)
    Pablo Castillo (2)

    1. Plant Protection Institute, N.AG.RE.F., Hellenic Agricultural Organization-DEMETER, PO BOX 2228, 71003, Heraklion, Crete, Greece
    2. Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Campus de Excelencia Internacional Agroalimentario, ceiA3, Apdo. 4084, 14080, Córdoba, Spain
    3. Institute of Viticulture and Horticulture, N.AG.RE.F., Hellenic Agricultural Organization-DEMETER, PO BOX 2228, 71003, Heraklion, Crete, Greece
  • ISSN：1573-8469
文摘
The occurrence and geographic distribution of longidorid nematode species inhabiting the rhizosphere of cultivated and wild olive and grapevine in Crete Island were investigated. Morphological and morphometrical studies identified five Longidorus and six Xiphinema species, with frequencies of prevalence (for wild and cultivated olives and grapevines, respectively) as follows: Longidorus closelongatus (2.0-3.3?%), L. cretensis (1.0-.7?%), L. moesicus (13.3?% only in grapevines), L. orientalis (3.3?% only in grapevines), L. pseudoelongatus (7.0?% only in olives), Xiphinema cretense n. sp. (3.0?% only in olives), X. index (3.0-3.3?%), X. israeliae (6.3?% only in olives), X. italiae (3.3-0.0?%), X. pachtaicum (26.7-2?%) and X. simile (3.3?% only in grapevines). Xiphinema cretense n. sp. is characterized by a body size 3,872-,135?μm long, lip region anteriorly rounded, separated from the rest of the body by a depression, odontostyle and odontophore 140.6 and 80.3?μm long respectively, vulva position at 46.0-0.5?%, female tail 31.0-8.0?μm long, nearly hemispherical with curvature essentially dorsal and with a tip completely rounded or presenting a very short bulge, c ratio (119.1-86.9), c-ratio (0.7-.8). Molecular characterisation using D2-D3 expansion regions of 28S rRNA, 18S rRNA and ITS1-rRNA was carried out and maximum likelihood and Bayesian inference analysis were used to reconstruct phylogenetic relationships among these species and with other longidorids.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址：北京市海淀区学院路29号 邮编：100083

电话：办公室：(+86 10)66554848；文献借阅、咨询服务、科技查新：66554700