Quantitative trait loci mapping for yield components and kernel-related traits in multiple connected RIL populations in maize
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  • 作者:Chunhui Li ; Yongxiang Li ; Baocheng Sun ; Bo Peng ; Cheng Liu ; Zhizhai Liu
  • 关键词:Maize ; QTL ; Yield ; Kernel ; related traits
  • 刊名:Euphytica
  • 出版年:2013
  • 出版时间:October 2013
  • 年:2013
  • 卷:193
  • 期:3
  • 页码:303-316
  • 全文大小:400KB
  • 参考文献:1. Ajmone Marsan P, Gorni C, Chitto A, Redaelli R, Van Vijk R, Stam P, Motto M (2001) Identification of QTLs for grain yield and grain-related traits of maize ( / Zea mays L.) using an AFLP map, different testers, and cofactor analysis. Theor Appl Genet 102:230-43 CrossRef
    2. Ajnone-Marsan P, Monfredini G, Ludwig W, Melchinger A, Franceschini P, Pagnotto G, Motto M (1995) In an elite cross of maize a major quantitative trait locus controls one-fourth of the genetic variation for grain yield. Theor Appl Genet 90:415-24 CrossRef
    3. Austin D, Lee M (1996) Comparative mapping in F2:3 and F6:7 generations of quantitative trait loci for grain yield and yield components in maize. Theor Appl Genet 92:817-26 CrossRef
    4. Austin DF, Lee M, Hallauer AR, Veldboom LR (2000) Genetic mapping in maize with hybrid progeny across testers and generations: grain yield and grain moisture. Crop Sci 40:30-9 CrossRef
    5. Azanza F, Tadmor Y, Klein B, Rocheford T, Juvik J (1996) Quantitative trait loci influencing chemical and sensory characteristics of eating quality in sweet corn. Genome 39:40-0 CrossRef
    6. Beavis W, Grant D, Albertsen M, Fincher R (1991) Quantitative trait loci for plant height in four maize populations and their associations with qualitative genetic loci. Theor Appl Genet 83:141-45 CrossRef
    7. Brown PJ, Upadyayula N, Mahone GS, Tian F, Bradbury PJ, Myles S, Holland JB, Flint-Garcia S, McMullen MD, Buckler ES (2011) Distinct genetic architectures for male and female inflorescence traits of maize. PLoS Genet 7:e1002383 CrossRef
    8. Buckler ES, Holland JB, Bradbury PJ, Acharya CB, Brown PJ, Browne C, Ersoz E, Flint-Garcia S, Garcia A, Glaubitz JC (2009) The genetic architecture of maize flowering time. Science 325:714-18 CrossRef
    9. Chen DH, Ronald P (1999) A rapid DNA minipreparation method suitable for AFLP and other PCR applications. Plant Mol Biol Rep 17:53-7 CrossRef
    10. Cook JP, McMullen MD, Holland JB, Tian F, Bradbury P, Ross-Ibarra J, Buckler ES, Flint-Garcia SA (2012) Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiol 158:824-34 CrossRef
    11. Fan C, Xing Y, Mao H, Lu T, Han B, Xu C, Li X, Zhang Q (2006) / GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet 112:1164-171 CrossRef
    12. Goldman IL, Rocheford TR, Dudley JW (1994) Molecular markers associated with maize kernel oil concentration in an Illinois high protein?×?Illinois low protein cross. Crop Sci 34:908-15 CrossRef
    13. Gupta PK, Rustgi S, Kumar N (2006) Genetic and molecular basis of grain size and grain number and its relevance to grain productivity in higher plants. Genome 49:565-71 CrossRef
    14. Hallauer AR, Miranda JB (1988) Quantitative genetics in maize breeding, 2nd edn. Iowa State University, Ames
    15. Holland JB (2007) Genetic architecture of complex traits in plants. Curr Opin In Plant Biol 10:156-61 CrossRef
    16. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newberg LA, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174 CrossRef
    17. Lee M, Austin DF (1998) Detection of quantitative trait loci for grain yield and yield components in maize across generations in stress and nonstress environments. Crop Sci 38:1296-308 CrossRef
    18. Lee M, Veldboom LR (1996) Genetic mapping of quantitative trait loci in maize in stress and nonstress environments: I. Grain yield and yield components. Crop Sci 36:1310-319 CrossRef
    19. Li Y, Wang TY (2010) Germplasm base of maize breeding in China and formation of foundation parents. J Maize Sci 18(5):1- CrossRef
    20. Li Z, Pinson SRM, Stansel JW, Paterson AH (1998) Genetic dissection of the source-sink relationship affecting fecundity and yield in rice ( / Oryza sativa L.). Mol Breed 4:419-26 CrossRef
    21. Li Y, Niu S, Dong Y, Cui D, Wang Y, Liu Y, Wei M (2007) Identification of trait-improving quantitative trait loci for grain yield components from a dent corn inbred line in an advanced backcross BC2F2 population and comparison with its F2:3 population in popcorn. Theor Appl Genet 115:129-40 CrossRef
    22. Li Y, Li X, Li J, Fu J, Wang Y, Wei M (2009a) Dent corn genetic background influences QTL detection for grain yield and yield components in high-oil maize. Euphytica 169:273-84 CrossRef
    23. Li Y, Wang Y, Shi Y, Song Y, Wand T, Li Y (2009b) Correlation analysis and QTL mapping for traits of kernel structure and yield components in maize. Sci Agric Sin 42:408-18
    24. Li Q, Li L, Yang X, Warburton M, Bai G, Dai J, Li J, Yan J (2010) Relationship, evolutionary fate and function of two maize co-orthologs of rice / GW2 associated with kernel size and weight. BMC Plant Biol 10:143 CrossRef
    25. Lima MLA, de Souza CL, Bento DAV, de Souza AP, Carlini-Garcia LA (2006) Mapping QTL for grain yield and plant traits in a tropical maize population. Mol Breed 17:227-39 CrossRef
    26. Lin HX, Qian HR, Zhuang JY, Lu J, Min SK, Xiong ZM, Huang N, Zheng KL (1996) RFLP mapping of QTLs for yield and related characters in rice ( / Oryza sativa L.). Theor Appl Genet 92:920-27 CrossRef
    27. Liu XH, Tan ZB, Rong TZ (2009) Molecular mapping of a major QTL conferring resistance to SCMV based on immortal RIL population in maize. Euphytica 167:229-35 CrossRef
    28. Lübberstedt T, Melchinger AE, Utz HF, Klein D, Sch?n CC (1997) QTL mapping in testcrosses of European flint lines of maize: I. Comparison of different testers for forage yield traits. Crop Sci 37:921-31 CrossRef
    29. McMullen MD, Kresovich S, Villeda HS, Bradbury P, Li H, Sun Q, Flint-Garcia S, Thornsberry J, Acharya C, Bottoms C (2009) Genetic properties of the maize nested association mapping population. Science 325:737-40 CrossRef
    30. Melchinger AE, Herrmann RG, Sch?n CC, Brunklaus-Jung E, Seitzer JF, Boppenmaier J (1994) RFLP mapping in maize: quantitative trait loci affecting testcross performance of elite European flint lines. Crop Sci 34:378-89 CrossRef
    31. Melchinger AE, Utz HF, Sch?n CC (1998) Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149:383-03
    32. Melchinger AE, Mihaljevic R, Utz HF (2004) Congruency of quantitative trait loci detected for agronomic traits in testcrosses of five populations of European maize. Crop Sci 44:114-24 CrossRef
    33. Messmer R, Fracheboud Y, B?nziger M, Vargas M, Stamp P, Ribaut JM (2009) Drought stress and tropical maize: QTL-by-environment interactions and stability of QTLs across environments for yield components and secondary traits. Theor Appl Genet 119:913-30 CrossRef
    34. Muranty H (1996) Power of tests for quantitative trait loci detection using full-sib families in different schemes. Heredity 76:156-65 CrossRef
    35. Peng B, Li Y, Wang Y, Liu C, Liu Z, Tan W, Zhang Y, Wang D, Shi Y, Sun B (2011) QTL analysis for yield components and kernel-related traits in maize across multi-environments. Theor Appl Genet 122:1305-320 CrossRef
    36. Qiao Y, Jiang W, Rahman ML, Chu SH, Piao R, Han L, Koh HJ (2008) Comparison of molecular linkage maps and QTLs for morphological traits in two reciprocal backcross populations of rice. Mol Cells 25:417
    37. Rahman ML, Chu SH, Choi M, Li Qiao Y, Jiang W, Piao R, Khanam S, Cho Y, Jeung J, Jena KK (2007) Identification of QTLs for some agronomic traits in rice using an introgression line from / Oryza minuta. Mol Cells 24:16
    38. Revilla P, Malvar R, Ordás R, Butrón A (1999) Relationship among kernel weight, early vigor, and growth in maize. Crop Sci 39:654-58 CrossRef
    39. Ribaut JM, Jiang C, Gonzalez-de-Leon D, Edmeades G, Hoisington D (1997) Identification of quantitative trait loci under drought conditions in tropical maize. 2. Yield components and marker-assisted selection strategies. Theor Appl Genet 94:887-96 CrossRef
    40. Rocheford TR, Berke TG (1995) Quantitative trait loci for flowering, plant and ear height, and kernel traits in maize. Crop Sci 35:1542-549 CrossRef
    41. SAS Institute Inc. (1999) SAS user’s guide, release 8.01 edition. SAS Institute Inc., Cary
    42. Shomura A, Izawa T, Ebana K, Ebitani T, Kanegae H, Konishi S, Yano M (2008) Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet 40:1023-028 CrossRef
    43. Smith O, Beavis W, Grant D, Fincher R (1994) Identification of quantitative trait loci using a small sample of topcrossed and F4 progeny from maize. Crop Sci 34:882-96 CrossRef
    44. Song XJ, Huang W, Shi M, Zhu MZ, Lin HX (2007) A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat Genet 39:623-30 CrossRef
    45. Stuber CW, Lincoln SE, Wolff D, Helentjaris T, Lander E (1992) Identification of genetic factors contributing to heterosis in a hybrid from two elite maize inbred lines using molecular markers. Genetics 132:823-39
    46. Tang J, Yan J, Ma X, Teng W, Wu W, Dai J, Dhillon BS, Melchinger AE, Li J (2010) Dissection of the genetic basis of heterosis in an elite maize hybrid by QTL mapping in an immortalized F2 population. Theor Appl Genet 120:333-40 CrossRef
    47. Tian F, Bradbury PJ, Brown PJ, Hung H, Sun Q, Flint-Garcia S, Rocheford TR, McMullen MD, Holland JB, Buckler ES (2011) Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat Genet 43:159-62 CrossRef
    48. Utz HF (1997) PLABSTAT: a computer program for statistical analysis of plant breeding experiments. (Accessed 3Bwin of Feb 2010). Institute of Plant Breeding, Seed Science, and Population Genetics, University of Hohenheim, Stuttgart, Germany. http://www.uni-hohenheim.de/~ipspwww/soft.html
    49. Vargas M, van Eeuwijk FA, Crossa J, Ribaut JM (2006) Mapping QTLs and QTL?×?environment interaction for CIMMYT maize drought stress program using factorial regression and partial least squares methods. Theor Appl Genet 112:1009-023 CrossRef
    50. Veldboom LR, Lee M (1994) Molecular-marker-facilitated studies of morphological traits in maize. II: Determination of QTLs for grain yield and yield components. Theor Appl Genet 89:451-58 CrossRef
    51. Wan X, Weng J, Zhai H, Wang J, Lei C, Liu X, Guo T, Jiang L, Su N, Wan J (2008) Quantitative trait loci (QTL) analysis for rice grain width and fine mapping of an identified QTL allele / gw- / 5 in a recombination hotspot region on chromosome 5. Genetics 179:2239-252 CrossRef
    52. Wang Y, Liu C, Wang T, Shi Y, Song Y, Li Y (2007) QTL analysis of yield components in maize under different water regimes. J Plant Genet Resour 8:179-83
    53. Xing Y, Tan Y, Hua J, Sun X, Xu C, Zhang Q (2002) Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice. Theor Appl Genet 105:248-57 CrossRef
    54. Xu S (1998) Mapping quantitative trait loci using multiple families of line crosses. Genetics 148:517-24
    55. Yan J, Tang H, Huang Y, Zheng Y, Li J (2006) Quantitative trait loci mapping and epistatic analysis for grain yield and yield components using molecular markers with an elite maize hybrid. Euphytica 149:121-31 CrossRef
    56. Yang J, Zhu J, Williams RW (2007) Mapping the genetic architecture of complex traits in experimental populations. Bioinformatics 23:1527-536 CrossRef
    57. Zhao F, Meng X, Li W, Xu X, Wang B, Guo B (2008) Inheritance relation of maize resistant genes among foundation parent huangzaosi and its derivative lines and hybrids. J Maize Sci 16:15-8
  • 作者单位:Chunhui Li (1)
    Yongxiang Li (1)
    Baocheng Sun (2)
    Bo Peng (1)
    Cheng Liu (2)
    Zhizhai Liu (1)
    Zhaozhao Yang (1)
    Qingchao Li (1)
    Weiwei Tan (1)
    Yan Zhang (1)
    Di Wang (1)
    Yunsu Shi (1)
    Yanchun Song (1)
    Tianyu Wang (1)
    Yu Li (1)

    1. Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
    2. Institute of Food Crops, Xinjiang Academy of Agricultural Sciences, Urumqi, 830000, China
  • ISSN:1573-5060
文摘
Grain yield is one of the most important and complex quantitative traits in maize breeding. In the present study, a total of 11 connected RIL populations, derived from crosses between elite inbreed “Huangzaosi-as the common parent and 11 elite inbreeds, were evaluated for five yield components and kernel-related traits under six environments. Quantitative trait loci (QTL) were detected for the traits under each environment and in joint analysis across all environments for each population. A total of 146 major QTL with R2?>?10?% in at least one environment and also detected based on joint analysis across all environments were identified in the 11 populations. Lqkwei4 conferring kernel weight and Lqklen4-1 conferring kernel length both located in the adjacent marker intervals in bin 4.05 were stably expressed in four environments and in joint analysis across six environments, with the largest R2 over 27 and 24?% in a single environment, respectively. Moreover, all major QTL detected in the 11 populations were aligned on the IBM2 2008 neighbors reference map. Totally 16 common QTL (CQTL) were detected. Seven important CQTL (CQTL1-2, CQTL1-3, CQTL4-1, CQTL4-2, CQTL4-3, CQTL4-4, and CQTL6-1) were located in bin 1.07, 1.10, 4.03, 4.05, 4.08, 4.09 and 6.01-.02, respectively. These chromosomal regions could be targets for fine mapping and marker-assisted selection.

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