Identification of candidate genes JcARF19 and JcIAA9 associated with seed size traits in Jatropha

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• 作者：Jian Ye (1) (4)
  Peng Liu (1)
  Chengsong Zhu (2)
  Jing Qu (1)
  Xianghua Wang (3)
  Yanwei Sun (1)
  Fei Sun (1)
  Yulin Jiang (1)
  Genhua Yue (1)
  Chunming Wang (1) (5)
  
• 关键词：Jatropha ; ARF19 ; IAA9 ; QTL ; Seed size
• 刊名：Functional & Integrative Genomics
• 出版年：2014
• 出版时间：December 2014
• 年：2014
• 卷：14
• 期：4
• 页码：757-766
• 全文大小：1,314 KB
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• 作者单位：Jian Ye (1) (4)
  Peng Liu (1)
  Chengsong Zhu (2)
  Jing Qu (1)
  Xianghua Wang (3)
  Yanwei Sun (1)
  Fei Sun (1)
  Yulin Jiang (1)
  Genhua Yue (1)
  Chunming Wang (1) (5)
  
  1. Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, 117604, Singapore, Singapore
  4. State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101, Beijing, China
  2. Department of Psychiatry, Carve college of Medicine, University of Iowa, Iowa City, IA, 52242, USA
  3. Biomass Energy Research Institute, Neijiang Academy of Agricultural Sciences, Sichuan, China
  5. State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, 210095, Nanjing, China
  
• ISSN：1438-7948

文摘

Jatropha curcas is a new promising bioenergy crop due to the high oil content in its seeds that can be converted into biodiesel. Seed size, a major determinant of Jatropha oil yield, is a target trait for Jatropha breeding. Due to the vital roles of phytohormone auxin in controlling seed and fruit development, we screened key genes in auxin pathway including ARF and IAA families and downstream effectors to identify candidate genes controlling seed size in Jatropha. As a result, JcARF19 was mapped in the major quantitative trait locus (QTL) region and significantly associated with seed length. By using expression QTL (eQTL) analysis to link variants with functional candidate genes, we provided evidences that seed traits were affected by the interaction of JcARF19 and JcIAA9. ARF19 and IAA9, involved in auxin signal transduction, were conserved in higher plants. These data including the single-nucleotide polymorphisms (SNPs) in the two genes could lead to utilization of the genes by integrating favored alleles into elite varieties through marker-assisted selection.