Genetic map and QTL controlling fiber quality traits in upland cotton (Gossypium hirsutum L.)

详细信息    查看全文

• 作者：Zhaoyun Tan ; Xiaomei Fang ; Shiyi Tang ; Jian Zhang ; Dajun Liu ; Zhonghua Teng…
• 关键词：Upland cotton (G. hirsutum L.) ; Genetic map ; Fiber quality traits ; QTL
• 刊名：Euphytica
• 出版年：2015
• 出版时间：June 2015
• 年：2015
• 卷：203
• 期：3
• 页码：615-628
• 全文大小：598 KB
• 参考文献：Al-Ghazi Y, Bourot S, Arioli T, Dennis ES, Llewellyn DJ (2009) Transcript profiling during fiber development identifies pathways in secondary metabolism and cell wall structure that may contribute to cotton fiber quality. Plant Cell Physiol 50:1364-381View Article PubMed
  Blenda A, Fang DD, Rami JF, Garsmeur O, Luo F, Lacape JM (2012) A high density consensus genetic map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check. PLoS One 7:e45739View Article PubMed Central PubMed
  Chen L, Zhang ZS, Hu MC, Wang W, Zhang J, Liu DJ, Zheng J, Zheng FM, Ma J (2008) Genetic linkage map construction and QTL mapping for yield and fiber quality in upland cotton. Acta Agron Sin 34:1199-205 (in Chinese with English abstract)View Article
  Culp TW, Lewis CF (1973) Breeding methods for improving yield and fiber quality of upland cotton (Gossypium hirsutum). Crop Sci 13:686-89View Article
  Guo WZ, Cai CP, Wang CB, Han ZG, Song XL, Wang K, Niu XW, Wang C, Lu KY, Shi B, Zhang TZ (2007) A microsatellite-based, gene-rich linkage map reveals genome structure, function, and evolution in Gossypium. Genetics 176:527-41View Article PubMed Central PubMed
  Guo WZ, Cai CP, Wang CB, Zhao L, Wang L, Zhang TZ (2008) A preliminary analysis of genome structure and composition in Gossypium hirsutum. BMC Genomics 9:314View Article PubMed Central PubMed
  Hovav R, Udall JA, Hovav E, Rapp R, Flagel LE, Wendel JF (2008) A majority of cotton genes are expressed in single-celled fiber. Planta 227:319-29View Article PubMed
  Hu WJ, Zhang XY, Zhang TZ, Guo WZ (2008) Molecular tagging and source analysis of QTL for elite fiber quality in upland cotton. Acta Agron Sin 34:578-86 (in Chinese with English abstract)View Article
  Iqbal J, Reddy OUK, El-Zik KM, Pepper AE (2001) A genetic bottleneck in the ‘evolution under domestication-of Upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theor Appl Genet 103:547-54View Article
  Lacape JM, Nguyen TB, Thibivilliers S, Bojinov B, Courtois B, Cantrell RG, Burr B, Hau B (2003) A combined RFLP–SSR–AFLP map of tetraploid cotton based on a Gossypium hirsutum?×?Gossypium barbadense backcross population. Genome 46:612-26View Article PubMed
  Lacape JM, Dessauw D, Rajab M, Noyer JL, Hau B (2007) Microsatellite diversity in tetraploid Gossypium germplasm: assembling a highly informative genotyping set of cotton SSRs. Mol Breed 19:45-8View Article
  Lacape JM, Llewellyn D, Jacobs J, Arioli T, Becker D, Calhoun S, Al-Ghazi Y, Liu SM, Pala? O, Georges S, Giband M, de Assun??o H, Barroso V, Claverie M, Gawryziak G, Jean J, Vialle M, Viot C (2010) Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum?×?G. barbadense RIL population. BMC Plant Biol 10:132View Article PubMed Central PubMed
  Lee JJ, Woodward AW, Chen ZJ (2007) Gene expression changes and early events in cotton fibre development. Ann Bot 100:1391-401View Article PubMed Central PubMed
  Lin ZX, Zhang YX, Zhang XL, Guo XP (2009) A high-density integrative linkage map for Gossypium hirsutum. Euphytica 166:35-5View Article
  Ni HJ, Wang W, Teng ZH, Zhang J, Liu DH, Zhang ZS (2011) QTL mapping of yield and fiber quality traits in upland cotton. J Southwest Univ (Nat Sci Ed) 33:7-4 (in Chinese with English abstract)
  Paterson AH, Lander ES, Hewitt JD, Peterson S, Lincoln SE, Tanksely SD (1988) Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 335:721-26View Article PubMed
  Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ (2003) QTL analysis of genotype by environment interaction affecting cotton fiber quality. Theor Appl Genet 106:384-96PubMed
  Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav R, Jones DC, Lemke C, Mansoor S, ur Rahman M, Rainville LN, Rambani A, Reddy UK, Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J (2012) Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature 492:423-27View Article PubMed
  Percival AE, Wendel JF, Stemart JM (1999) Taxonomy and germplasm resourses. In: Smith CW, Cothren JT (eds) Cotton: origin, history, technology, and production. Wiley, New York, pp 33-3
  Reinisch AJ, Dong JM, Brubaker CL, Stelly DM, Wendel JF, Paterson AH (1994) A detailed RFLP ma
• 作者单位：Zhaoyun Tan (1)
  Xiaomei Fang (1)
  Shiyi Tang (1)
  Jian Zhang (1)
  Dajun Liu (1)
  Zhonghua Teng (1)
  Ling Li (1)
  Huijuan Ni (1)
  Fengmin Zheng (1)
  Dexin Liu (1)
  Tingfu Zhang (1)
  Andrew H. Paterson (2)
  Zhengsheng Zhang (1)
  
  1. Engineering Research Center of South Upland Agriculture, Ministry of Education, Southwest University, Chongqing, 400716, People’s Republic of China
  2. Plant Genome Mapping Laboratory, University of Georgia, Athens, GA, 30602, USA
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Plant Physiology
  Plant Sciences
  Ecology
  
• 出版者：Springer Netherlands
• ISSN：1573-5060

文摘

Cotton is a leading natural fiber crop in the textile industry worldwide. The improvement of cotton fiber quality has become more important because of changes in spinning technology and ever-increasing demands. Mapping quantitative trait locus (QTL) for fiber quality traits will enable molecular marker-assisted selection (MAS) to improve fiber quality and provide an access to reveal the molecular mechanism of fiber development. A high-density intraspecific genetic map is constructed based on an upland cotton recombinant inbred line (RIL) population. A total of 25,313 SSR primer pairs were used and yielded 1,333 polymorphic markers, with a polymorphic ratio of 5.3?%, producing 1,382 polymorphic loci in the RIL population. The map comprised 1,274 loci and spanned 3,076.4?cM with an average distance of 2.41?cM between two adjacent markers. Based on the phenotypic data of fiber quality traits from five environments, a total of 59 QTL were detected. These QTL comprised 15 QTL for fiber upper half mean length, 10 QTL for fiber length uniformity, 9 QTL for fiber strength, 10 QTL for fiber elongation and 15 QTL for fiber micronaire, respectively. The genetic map constructed in this study is the most detailed upland cotton intraspecific map based on SSR markers to date, and could be used to construct consensus map or as reference genetic map for tetraploid cotton genome assembly. Stable QTL identified across multiple environments reflect some important and favorable alleles shaping fiber quality, and they are valuable candidate alleles for MAS breeding projects as well as for gene function research related to cotton fiber development and quality improvement.