Genome-wide association-mapping for fruit quality traits in tomato

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• 作者：Jing Zhang ; Jiantao Zhao ; Yan Liang ; Zhirong Zou
• 关键词：Tomato ; Fruit ; quality traits ; Association ; mapping ; Quantitative trait loci
• 刊名：Euphytica
• 出版年：2016
• 出版时间：January 2016
• 年：2016
• 卷：207
• 期：2
• 页码：439-451
• 全文大小：955 KB
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• 作者单位：Jing Zhang (1) (2)
  Jiantao Zhao (1) (2)
  Yan Liang (1)
  Zhirong Zou (1) (2)
  
  1. College of Horticulture, State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, 712100, Shaanxi, China
  2. Key Laboratory of Protected Horticultural Engineering in Northwest, Ministry of Agriculture, Yangling, China
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Plant Physiology
  Plant Sciences
  Ecology
  
• 出版者：Springer Netherlands
• ISSN：1573-5060

文摘

A diverse collection of 174 tomato plants was selected, including 123 accessions of cherry tomato (So lanum lycopersicum var. cerasiforme) and 51 accessions of heirloom cultivars (So lanum lycopersicum). Association-mapping for fruit nutritional and quality traits was conducted with 182 SSR using the mixed linear models. A total of 111 marker-trait associations (MTAs) (P < 0.005) were detected for ten measured traits. Most association loci were detected for fruit equatorial diameter, ascorbic acid and fruit weight, with 22, 22, 17 marker-trait associations, respectively. Co-localised quantitative trait loci (QTLs) and significant associations are compared, such as fw2.2, fw11.1, ED2a, brx2.1, PD3a, and PD9a, which validate this study. Moreover, we also compared previous genome-wide association studies and confirmed certain identified MTAs (e.g. CON30D-472, Z1707-10D) or genes, such as Solyc11g071840.1.1. Our results confirm some QTLs and highlight some new candidate chromosome regions with potential for further tomato fruit quality breeding. Keywords Tomato Fruit-quality traits Association-mapping Quantitative trait loci