Using global transcription machinery engineering (gTME) to improve ethanol tolerance of Zymomonas mobilis
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  • 作者:Furong Tan ; Bo Wu ; Lichun Dai ; Han Qin ; Zongxia Shui…
  • 关键词:Ethanol tolerance ; Zymomonas mobilis ; Random mutagenesis ; Global transcription machinery engineering (gTME) ; Error ; prone PCR ; σ70
  • 刊名:Microbial Cell Factories
  • 出版年:2016
  • 出版时间:December 2016
  • 年:2016
  • 卷:15
  • 期:1
  • 全文大小:1,478 KB
  • 参考文献:1.Luque R, Herrero-Davila L, Campelo JM, Clark JH, Hidalgo JM, Luna D, et al. Biofuels: a technological perspective. Energ Environ Sci. 2008;1(5):542–64.CrossRef
    2.Rubin EM. Genomics of cellulosic biofuels. Nature. 2008;454(7206):841–5.CrossRef
    3.dos Santos Dda S, Camelo AC, Rodrigues KC, Carlos LC, Pereira N Jr. Ethanol production from sugarcane bagasse by Zymomonas mobilis using simultaneous saccharification and fermentation (SSF) process. Appl Biochem Biotechnol. 2010;161(1–8):93–105.CrossRef
    4.He MX, Wu B, Qin H, Ruan ZY, Tan FR, Wang JL, et al. Zymomonas mobilis: a novel platform for future biorefineries. Biotechnol Biofuels. 2014;7(1):101–15.CrossRef
    5.Jeon YJ, Xun Z, Rogers PL. Comparative evaluations of cellulosic raw materials for second generation bioethanol production. Lett Appl Microbiol. 2010;51(5):518–24.CrossRef
    6.Rogers PL, Jeon YJ, Lee KJ, Lawford HG. Zymomonas mobilis for fuel ethanol and higher value products. Adv Biochem Eng Biotechnol. 2007;108:263–88.
    7.Franden MA, Pilath HM, Mohagheghi A, Pienkos PT, Zhang M. Inhibition of growth of Zymomonas mobilis by model compounds found in lignocellulosic. Biotechnol Biofuels. 2013;6:99–113.CrossRef
    8.Michel GP, Starka J. Effect of ethanol and heat on the protein pattern of Zymomonas mobilis. J Bacteriol. 1986;165(3):1040–2.
    9.Thanonkeo P, Laopaiboon P, Sootsuwan K, Yamada M. Magnesium ions improve growth and ethanol production of Zymomonas mobilis under heat or ethanol stress. Biotechnology. 2007;6(1):112–9.CrossRef
    10.Chen M. irrE, an exogenous gene from Deinococcus radiodurans, improves the growth of and ethanol production by a Zymomonas mobilis strain under ethanol and acid stresses. J Microbiol Biotechnol. 2010;20(7):1156–62.CrossRef
    11.Luo LH, Seo PS, Seo JW, Heo SY, Kim DH, Kim CH. Improved ethanol tolerance in Escherichia coli by changing the cellular fatty acids composition through genetic manipulation. Biotechnol Lett. 2009;31(12):1867–71.CrossRef
    12.Shi DJ, Wang CL, Wang KM. Genome shuffling to improve thermotolerance, ethanol tolerance and ethanol productivity of Saccharomyces cerevisiae. J Ind Microbiol Biotechnol. 2009;36(1):139–47.CrossRef
    13.Tao F, Miao JY, Shi GY, Zhang KC. Ethanol fermentation by an acid-tolerant Zymomonas mobilis under non-sterilized condition. Process Biochem. 2005;40(1):183–7.CrossRef
    14.Yang S, Land ML, Klingeman DM, Pelletier DA, Lu TY, Martin SL, et al. Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae. Proc Natl Acad Sci USA. 2010;107(23):10395–400.CrossRef
    15.He MX, Wu B, Shui ZX, Hu QC, Wang WG, Tan FR, et al. Transcriptome profiling of Zymomonas mobilis under furfural stress. Appl Microbiol Biotechnol. 2012;95(1):189–99.CrossRef
    16.He MX, Wu B, Shui ZX, Hu QC, Wang WG, Tan FR, et al. Transcriptome profiling of Zymomonas mobilis under ethonal stress. Biotechnol Biofuels. 2012;5:75–84.CrossRef
    17.Yang S, Pan C, Tschaplinski TJ, Hurst GB, Engle NL, Zhou W, et al. Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses. PLoS One. 2013;8(7):68886–99.CrossRef
    18.Kasavi C, Eraslan S, Arga KY, Oner ET, Kirdar B. A system based network approach to ethanol tolerance in Saccharomyces cerevisiae. BMC Syst Biol. 2014;8(1):90–103.CrossRef
    19.Lewis JA, Broman AT, Will J, Gasch AP. Genetic Architecture of ethanol-responsive transcriptome variation in Saccharomyces cerevisiae strains. Genetics. 2014;198(1):369–82.CrossRef
    20.Henderson CM, Block DE. Examining the role of membrane lipid composition in determining the ethanol tolerance of Saccharomyces cerevisiae. Appl Environ Microbiol. 2014;80(10):2966–72.CrossRef
    21.Lee JY, Sung BH, Yu BJ, Lee JH, Lee SH, Kim MS, et al. Phenotypic engineering by reprogramming gene transcription using novel artificial transcription factors in Escherichia coli. Nucleic Acids Res. 2008;36(16):102–11.CrossRef
    22.Park KS, Lee DK, Lee H, Lee Y, Jang YS, Kim YH, et al. Phenotypic alteration of eukaryotic cells using randomized libraries of artificial transcription factors. Nat Biotechnol. 2003;21(10):1208–14.CrossRef
    23.van Tol N, van der Zaal BJ. Artificial transcription factor-mediated regulation of gene expression. Plant Sci. 2014;225:58–67.CrossRef
    24.Alper H, Stephanopoulos G. Global transcription machinery engineering: a new approach for improving cellular phenotype. Metab Eng. 2007;9(3):258–67.CrossRef
    25.Klein-Marcuschamer D, Stephanopoulos G. Assessing the potential of mutational strategies to elicit new phenotypes in industrial strains. Proc Natl Acad Sci USA. 2008;105(7):2319–24.CrossRef
    26.Alper H, Moxley J, Nevoigt E, Fink GR, Stephanopoulos G. Engineering yeast transcription machinery for improved ethanol tolerance and production. Science. 2006;314(5805):1565–8.CrossRef
    27.Hong SH, Wang X, Wood TK. Controlling biofilm formation, prophage excision and cell death by rewiring global regulator H-NS of Escherichia coli. Microb Biotechnol. 2010;3(3):344–56.CrossRef
    28.Hong SH, Lee J, Wood TK. Engineering global regulator Hha of Escherichia coli to control biofilm dispersal. Microb Biotechnol. 2010;3(6):717–28.CrossRef
    29.Chong HQ, Huang L, Yeow JW, Wang I, Zhang HF, Song H, et al. Improving ethanol tolerance of Escherichia coli by rewiring its global regulator cAMP receptor protein (CRP). PLoS One. 2013;8(2):1–9.CrossRef
    30.Zhang H, Chong H, Ching CB, Song H, Jiang R. Engineering global transcription factor cyclic AMP receptor protein of Escherichia coli for improved 1-butanol tolerance. Appl Microbiol Biotechnol. 2012;94(4):1107–17.CrossRef
    31.Kovach ME, Elzer PH, Steven Hill D, Robertson GT, Farris MA, Roop RM II, et al. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene. 1995;166:175–6.CrossRef
    32.Conway T, Osman YA, Konnan JI, Hoffmann EM, Ingram LO. Promoter and nucleotide sequences of the Zymomonas mobilis pyruvate decarboxylase. J Bacteriol. 1987;169(3):949–54.
    33.Neale AD, Scopes RK, Kelly JM, Wettenhall REH. The two alcohol dehydrogenases of Zymomonas mobilis purification by differential dye ligand chromatography, molecular characterisation and physiological roles. Eur J Biochem. 1986;154:119–24.CrossRef
    34.Mackenzie KF, Eddy CK, Ingram LO. Modulation of alcohol dehydrogenase isoenzyme levels in Zymomonas mobilis by iron and zinc. J Bacteriol. 1989;171(2):1063–8.
    35.NCBI conserved domain. Search for conserved domains within a protein or coding nucleotide sequence. 2015. http://​www.​ncbi.​nlm.​nih.​gov/​Structure/​cdd/​wrpsb.​cgi?​SEQUENCE=​56544093&​FULL .
    36.Seo JS, Chong H, Park HS, Yoon KO, Jung C, Kim JJ, et al. The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4. Nat Biotechnol. 2005;23(1):63–8.CrossRef
    37.Palonen E, Lindström M, Somervuo P, Korkeala H. Alternative sigma factor σE has an important role in stress tolerance of Yersinia pseudotuberculosis IP32953. Appl Environ Microbiol. 2013;79(19):5970–7.CrossRef
  • 作者单位:Furong Tan (1)
    Bo Wu (1)
    Lichun Dai (1)
    Han Qin (1)
    Zongxia Shui (1)
    Jingli Wang (1)
    Qili Zhu (1)
    Guoquan Hu (1) (2)
    Mingxiong He (1) (2)

    1. Biogas Institute of Ministry of Agriculture, Biomass Energy Technology Research Centre, Section 4-13, Renmin Nanlu, Chengdu, 610041, China
    2. Key Laboratory of Development and Application of Rural Renewable Energy, Ministry of Agriculture, Chengdu, 610041, China
  • 刊物类别:Chemistry and Materials Science
  • 刊物主题:Biotechnology
    Applied Microbiology
    Environmental Engineering/Biotechnology
  • 出版者:BioMed Central
  • ISSN:1475-2859
文摘
Background With the increasing global crude oil crisis and resulting environmental concerns, the production of biofuels from renewable resources has become increasingly important. One of the major challenges faced during the process of biofuel production is the low tolerance of the microbial host towards increasing biofuel concentrations.

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