Aneurinibacillus humi sp. nov., Isolated from Soil Collected in Ukraine
详细信息    查看全文
  • 作者:Kalam Lee ; Sang Seob Lee
  • 关键词:Aneurinibacillus ; Taxonomy ; Soil
  • 刊名:Current Microbiology
  • 出版年:2016
  • 出版时间:February 2016
  • 年:2016
  • 卷:72
  • 期:2
  • 页码:139-144
  • 全文大小:376 KB
  • 参考文献:1.Allan RN, Lebbe L, Heyrman J, De Vos P, Buchanan CJ, Logan NA (2005) Brevibacillus levickii sp. nov. and Aneurinibacillus terranovensis sp. nov., two novel thermoacidophiles isolated from geothermal soils of northern Victoria Land, Antarctica. Int J Syst Evol Microbiol 55:1039–1050PubMed CrossRef
    2.JG Cappuccino, N Sherman (2010) Microbiology: a laboratory manual, 9th edn. Benjamin Cummings, San Francisco, pp 69–74, 161–164
    3.Doetsch RN (1981) Determinative methods of light microscopy. In: Gerhardt P, Murray RGE, Costilow RN, Nester EW, Wood WA, Krieg NR, Phillips GH (eds) Manual of methods for general bacteriology. American Society for Microbiology, Washington, DC, pp 21–33
    4.Felsenstein J (1985) Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39:783–791CrossRef
    5.Frank JA, Reich CI, Sharma S, Weisbaum JS, Wilson BA, Olsen GJ (2008) Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microbiol 74:2461–2470PubMed PubMedCentral CrossRef
    6.Goto K, Fujita R, Kato Y, Asahara M, Yokota A (2004) Reclassification of Brevibacillus brevis strains NCIMB 13288 and DSM 6472 (=NRRL NRS-887) as Aneurinibacillus danicus sp. nov. and Brevibacillus limnophilus sp. nov. Int J Syst Evol Microbiol 54:419–427PubMed CrossRef
    7.Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95–98
    8.Heyndrickx M, Lebbe L, Vancanneyt M, Kersters K, De Vos P, Logan NA, Forsyth G, Nazli S, Ali N et al (1997) A polyphasic reassessment of the genus Aneurinibacillus, reclassification of Bacillus thermoaerophilus (Meier-Stauffer et al. 1996) as Aneurinibacillus thermoaerophilus comb, nov., and emended descriptions of A. aneurinilyticus corrig., A. migulanus, and A. thermoaerophilus. Int J Syst Bacteriol 47:808–817CrossRef
    9.Hiraishi A, Ueda Y, Ishihara J, Mori T (1996) Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42:457–469CrossRef
    10.Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH et al (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721PubMed CrossRef
    11.Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, CambridgeCrossRef
    12.Lee KC, Kim KK, Eom MK, Kim J-S, Kim D-S, Ko S-H, Lee J-S (2014) Aneurinibacillus soli. sp. nov., isolated from mountain soil. Int J Syst Evol Microbiol 64:3792–3797PubMed CrossRef
    13.Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from micro organisms. J Mol Biol 3:208–218CrossRef
    14.Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167CrossRef
    15.Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425PubMed
    16.Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc., Newark, DE
    17.Schleifer KH, Kandler O (1972) Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477PubMed PubMedCentral
    18.Shida O, Takagi H, Kadowaki K, Komagata K (1996) Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. Int J Syst Bacteriol 46:939–946PubMed CrossRef
    19.Tamaoka J, Komagata K (1984) Determination of DNA base composition by reversed phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128CrossRef
    20.Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739PubMed PubMedCentral CrossRef
    21.Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882CrossRef
    22.Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703PubMed PubMedCentral
  • 作者单位:Kalam Lee (1)
    Sang Seob Lee (1)

    1. Department of Life Science, Graduate School of Kyonggi University, 94-6 Iui-dong Yeongtong-gu, Suwon, 433-760, Republic of Korea
  • 刊物类别:Biomedical and Life Sciences
  • 刊物主题:Life Sciences
    Microbiology
    Biotechnology
  • 出版者:Springer New York
  • ISSN:1432-0991
文摘
A novel bacterium, designated U33T, was isolated from a soil sample collected in Mykhailyky, Poltavs’ka oblast, Ukraine. The bacterium was aerobic, Gram-positive, spore-forming, and consists of motile rods. The taxonomic position of strain U33T was studied by a polyphasic approach, and the results clearly showed that the phenotypic and chemotaxonomic properties are consistent with those of the genus Aneurinibacillus. The phylogenic analysis with 16S rRNA gene sequence of strains U33T showed the highest sequence similarity to those of Aneurinibacillus aneuriniticus ATCC 12856T (96.7 %), Aneurinibacillus migulanus DSM 2895T (96.7 %), Aneurinibacillus danicus NCIMB 13288T (95.8 %), and lower sequence similarity with other members of the genus Aneurinibacillus. Growth was observed at 20–55 °C (optimum, 37 °C) at pH 5.0–9.0 (optimum, pH 7) and with 0–5 % (w/v) NaCl (optimum, 2 % NaCl). The predominant menaquinone was MK-7 and the cell wall peptidoglycan consist of meso-diaminopimelic acid. The major cellular fatty acids are iso-C15:0 (58.0 %) and anteiso-C15:0 (13.2 %). The DNA G+C content of the strain U33T was 45.8 %. The physiological and chemotaxonomic characteristics distinguish strain U33T from the validly published species of genus Aneurinibacillus, and therefore, we consider this strain to represent a novel species of the genus Aneurinibacillus. The name Aneurinibaciilus humi sp. nov. is proposed with strain U33T (= KEMC7305-119T = JCM19865T) as the type strain.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700