Proliferation of diversified clostridial species during biological soil disinfestation incorporated with plant biomass under various conditions

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• 作者：Subrata Mowlick ; Toshiaki Takehara ; Nobuo Kaku…
• 关键词：Anaerobic bacteria ; Biological soil disinfestation (BSD) ; Clone library ; Clostridial group ; Fusarium oxysporum
• 刊名：Applied Microbiology and Biotechnology
• 出版年：2013
• 出版时间：September 2013
• 年：2013
• 卷：97
• 期：18
• 页码：8365-8379
• 全文大小：1347KB
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• 作者单位：Subrata Mowlick (1)
  Toshiaki Takehara (2)
  Nobuo Kaku (1)
  Katsuji Ueki (1)
  Atsuko Ueki (1)
  
  1. Faculty of Agriculture, Yamagata University, 1-23, Wakaba-machi, Tsuruoka, 997-8555, Yamagata, Japan
  2. NARO Western Region Agricultural Research Center, Hiroshima, Japan
  
• ISSN：1432-0614

文摘

Biological soil disinfestation (BSD) involves the anaerobic decomposition of plant biomass by microbial communities leading to control of plant pathogens. We analyzed bacterial communities in soil of a model experiment of BSD, as affected by biomass incorporation under various conditions, to find out the major anaerobic bacterial groups which emerged after BSD treatments. The soil was treated with Brassica juncea plants, wheat bran, or Avena strigosa plants, irrigated at 20 or 30?% moisture content and incubated at 25-0?°C for 17?days. The population of Fusarium oxysporum f. sp. spinaciae incorporated at the start of the experiment declined markedly for some BSD conditions and rather high concentrations of acetate and butyrate were detected from these BSD-treated soils. The polymerase chain reaction-denaturing gradient gel electrophoresis analysis based on the V3 region of 16S rRNA gene sequences from the soil DNA revealed that bacterial profiles greatly changed according to the treatment conditions. Based on the clone library analysis, phylogenetically diverse clostridial species appeared exceedingly dominant in the bacterial community of BSD soil incorporated with Brassica plants or wheat bran, in which the pathogen was suppressed completely. Species in the class Clostridia such as Clostridium saccharobutylicum, Clostridium acetobutylicum, Clostridium xylanovorans, Oxobacter pfennigii, Clostridium pasteurianum, Clostridium sufflavum, Clostridium cylindrosporum, etc. were commonly recognized as closely related species of the dominant clone groups from these soil samples.