Analysis of Mitochondrial Hsp70 Homolog Amino Acid Sequences of Amitochondriate Organisms Using Apriori and Decision Tree

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• 关键词：Mitochondria ; Endosymbiosis ; Symbiogenesis ; Archezoa ; Giardia intestinalis ; Trichomonas vaginalis ; Vairimorpha necatrix ; Mitochondrial Hsp70 ; mtHsp70 ; Heat shock protein 70 ; Heat shock protein 70kDa ; HSPA9 ; Decision tree ; Apriori
• 刊名：Lecture Notes in Computer Science
• 出版年：2016
• 出版时间：2016
• 年：2016
• 卷：9771
• 期：1
• 页码：224-233
• 全文大小：109 KB
• 参考文献：1.Mereschkowsky, C.: Über natur und ursprung der chromatophoren im pflanzenreiche (1905)
  2.Sagan, L.: On the origin of mitosing cells. J. Theoret. Biol. 14(3), 225–IN6 (1967)CrossRef
  3.Cavalier-Smith, T.: A 6-kingdom classification and a unified phylogeny. In: Endocytobiology II, pp. 1027–1034 (1983)
  4.Cavalier-Smith, T.: Kingdom protozoa and its 18 phyla. Microbiol. Rev. 57(4), 953–994 (1993)
  5.Hirt, R.P., et al.: Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins. Proc. Nat. Acad. Sci. 96(2), 580–585 (1999)CrossRef
  6.Keeling, P.J., Luker, M.A., Palmer, J.D.: Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi. Mol. Biol. Evol. 17(1), 23–31 (2000)CrossRef
  7.Philippe, H.: Early–branching or fast–evolving eukaryotes? An answer based on slowly evolving positions. Proc. Roy. Soc. Lond. B: Biolog. Sci. 267(1449), 1213–1221 (2000)CrossRef
  8.Keeling, M.J., Eames, K.T.: Networks and epidemic models. J. Roy. Soc. Interface 2(4), 295–307 (2005)CrossRef
  9.Koonin, E.V.: The origin and early evolution of eukaryotes in the light of phylogenomics. Genome Biol. 11(5), 209 (2010)CrossRef
  10.Embley, T.M., Hirt, R.P.: Early branching eukaryotes? Curr. Opin. Genet. Dev. 8(6), 624–629 (1998)CrossRef
  11.Müller, M., Lindmark, D.G.: Respiration of hydrogenosomes of Tritrichomonas foetus. II. Effect of CoA on pyruvate oxidation. J. Biolog. Chem. 253(4), 1215–1218 (1978)
  12.Tovar, J., Fischer, A., Clark, C.G.: The mitosome, a novel organelle related to mitochondria in the amitochondrial parasite Entamoeba histolytica. Mol. Microbiol. 32(5), 1013–1021 (1999)CrossRef
  13.Bui, E.T., Bradley, P.J., Johnson, P.J.: A common evolutionary origin for mitochondria and hydrogenosomes. Proc. Nat. Acad. Sci. 93(18), 9651–9656 (1996)CrossRef
  14.Germot, A., Philippe, H., Le Guyader, H.: Presence of a mitochondrial-type 70-kDa heat shock protein in Trichomonas vaginalis suggests a very early mitochondrial endosymbiosis in eukaryotes. Proc. Nat. Acad. Sci. 93(25), 14614–14617 (1996)CrossRef
  15.Horner, D.S., et al.: Molecular data suggest an early acquisition of the mitochondrion endosymbiont. Proc. Roy. Soc. Lond. B: Biolog. Sci. 263(1373), 1053–1059 (1996)CrossRef
  16.Roger, A.J., Clark, C.G., Doolittle, W.F.: A possible mitochondrial gene in the early
  anching amitochondriate protist Trichomonas vaginalis. Proc. Nat. Acad. Sci. 93(25), 14618–14622 (1996)CrossRef
  17.Gray, M.W.: Mitochondrial evolution. Cold Spring Harb. Perspect. Biol. 4(9), a011403 (2012)CrossRef
  18.Lill, R., Mühlenhoff, U.: Iron–sulfur-protein biogenesis in eukaryotes. Trends Biochem. Sci. 30(3), 133–141 (2005)CrossRef
  19.Gupta, R.S., Singh, B.: Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus. Curr. Biol. 4(12), 1104–1114 (1994)CrossRef
  20.Hartl, F.-U., Hlodan, R., Langer, T.: Molecular chaperones in protein folding: the art of avoiding sticky situations. Trends Biochem. Sci. 19(1), 20–25 (1994)CrossRef
  21.Boorstein, W.R., Ziegelhoffer, T., Craig, E.A.: Molecular evolution of the Hsp70 multigene family. J. Mol. Evol. 38(1), 1–17 (1994)CrossRef
  22.Tovar, J., et al.: Mitochondrial remnant organelles of Giardia function in iron-sulphur protein maturation. Nature 426(6963), 172–176 (2003)CrossRef
  23.Arisue, N., et al.: Mitochondrial-type Hsp70 genes of the amitochondriate protists, Giardia intestinalis, Entamoeba histolytica and two microsporidians. Parasitol. Int. 51(1), 9–16 (2002)MathSciNet CrossRef
  24.Steinbüchel, A., Müller, M.: Anaerobic pyruvate metabolism of Tritrichomonas foetus and Trichomonas vaginalis hydrogenosomes. Mol. Biochem. Parasitol. 20(1), 57–65 (1986)CrossRef
  25.Vávra, J.: “Polar vesicles” of microsporidia are mitochondrial remnants (“mitosomes”). Folia Parasitol. 52(1/2), 193–195 (2005)CrossRef
  26.Hirt, R.P., et al.: A mitochondrial Hsp70 orthologue in Vairimorpha necatrix: molecular evidence that microsporidia once contained mitochondria. Curr. Biol. 7(12), 995–998 (1997)CrossRef
  
• 作者单位：Jiwon Song (16)
  Taeseon Yoon (16)
  
  16. Hankuk Academy of Foreign Studies/Natural Science, Yong-in, Republic of Korea
  
• 丛书名：Intelligent Computing Theories and Application
• ISBN：978-3-319-42291-6
• 刊物类别：Computer Science
• 刊物主题：Artificial Intelligence and Robotics
  Computer Communication Networks
  Software Engineering
  Data Encryption
  Database Management
  Computation by Abstract Devices
  Algorithm Analysis and Problem Complexity
  
• 出版者：Springer Berlin / Heidelberg
• ISSN：1611-3349
• 卷排序：9771

文摘

In the endosymbiont hypothesis, the host cell was initially believed to have developed a nucleus and other major characteristics of a eukaryotic cell before taking in the bacteria which in time became mitochondria. This explanation is mainly grounded on existence of early-branching lineages of eukaryote that lack mitochondria. However, an alternative view has gained more support after evolutionary remnants of mitochondria were found in these organisms, where the host cell was yet to evolve the intricacy of eukaryote when the endosymbiosis first began. In this research, we examined the amino acid sequences of mitochondrial Hsp70 found in Giardia intestinalis, Trichomonas vaginalis, and Vairimorpha necatrix from each of the three major amitochondriate lineages. Analyzing the sequences with apriori and decision tree algorithm, we will compare the data with the sequence of the mitochondriate Mus musculus, and therefore provide grounds to evaluate the scenarios of endosymbiosis.