Geographical genetic structure of Schistosoma japonicum revealed by analysis of mitochondrial DNA and microsatellite markers
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  • 作者:Mingbo Yin (1) (2)
    Hongyan Li (1)
    Donald P McManus (3)
    David Blair (4)
    Jing Su (1)
    Zhong Yang (1)
    Bin Xu (2)
    Zheng Feng (2)
    Wei Hu (1) (2)

    1. School of Life Science
    ; Fudan University ; Handan Road 220 ; Shanghai ; 200433 ; China
    2. National Institute of Parasitic Diseases
    ; Chinese Center for Disease Control and Prevention ; 207 Rui Jin Er Road ; Shanghai ; 200025 ; China
    3. QIMR Berghofer Medical Research Institute
    ; 300 Herston Road ; Brisbane ; Qld 4029 ; Australia
    4. School of Marine and Tropical Biology
    ; James Cook University ; Townsville ; Qld 4811 ; Australia
  • 关键词:Schistosoma japonicum ; Genetic diversity ; Genetic structure ; Population differentiation ; Mitochondrial DNA ; Microsatellite
  • 刊名:Parasites & Vectors
  • 出版年:2015
  • 出版时间:December 2015
  • 年:2015
  • 卷:8
  • 期:1
  • 全文大小:1,219 KB
  • 参考文献:1. Steinmann, P, Keiser, J, Bos, R, Tanner, M, Utzinger, J (2006) Schistosomiasis and water resources development: systematic review, meta-analysis, and estimates of people at risk. Lancet Infect Dis 6: pp. 411-425 CrossRef
    2. King, CH, Dickman, K, Tisch, DJ (2005) Reassessment of the cost of chronic helmintic infection: a meta-analysis of disability-related outcomes in endemic schistosomiasis. Lancet 365: pp. 1561-1569 CrossRef
    3. Zhao, QP, Sen Jiang, M, Dong, HF, Nie, P (2012) Diversification of Schistosoma japonicum in Mainland China Revealed by Mitochondrial DNA. Plos Neglect Trop D 6: pp. e1503 CrossRef
    4. Zhou, XN, Guo, JG, Wu, XH, Jiang, QW, Zheng, J, Dang, H (2007) Epidemiology of schistosomiasis in the People鈥檚 Republic of China, 2004. Emerg Infect Dis 13: pp. 1470-1476 CrossRef
    5. Zhou, XN, Bergquist, R, Leonardo, L, Yang, GJ, Yang, K, Sudomo, M Schistosomiasis Japonica: Control and Research Needs. In: Zhou, XN, Bergquist, R, Olveda, R, Utzinger, J eds. (2010) Advances in Parasitology, Vol 72: Important Helminth Infections in Southeast Asia: Diversity and Potential for Control and Elimination, Pt A. pp. 145-178
    6. Hope, M, Foley, DH, McManus, DP (1995) Electrophoretically detected allozyme variation reveals only moderate differentiation between Chinese and Philippine Schistosoma japonicum. Acta Trop 60: pp. 101-108 CrossRef
    7. Bowles, J, Hope, M, Tiu, WU, Liu, XS, McManus, DP (1993) Nuclear and mitochondrial genetic markers highly conserved between Chinese and Philippine Schistosoma japonicum. Acta Trop 55: pp. 217-229 CrossRef
    8. Sorensen, E, Drew, AC, Brindley, PJ, Bogh, HO, Gasser, RB, Qian, BZ (1998) Variation in the sequence of a mitochondrial NADH dehydrogenase I gene fragment among six natural populations of Schistosoma japonicum from China. Int J Parasitol 28: pp. 1931-1934 CrossRef
    9. Gasser, RB, Qian, BZ, Nansen, P, Johansen, MV, Bogh, H (1996) Use of RAPD for the detection of genetic variation in the human blood fluke, Schistosoma japonicum, from mainland China. Mol Cell Probes 10: pp. 353-358 CrossRef
    10. Shrivastava, J, Qian, BZ, McVean, G, Webster, JP (2005) An insight into the genetic variation of Schistosoma japonicum in mainland China using DNA microsatellite markers. Mol Ecol 14: pp. 839-849 CrossRef
    11. Zhao, GH, Mo, XH, Zou, FC, Li, J, Weng, YB, Lin, RQ (2009) Genetic variability among Schistosoma japonicum isolates from different endemic regions in China revealed by sequences of three mitochondrial DNA genes. Vet Parasitol 162: pp. 67-74 CrossRef
    12. Rudge, JW, Carabin, H, Balolong, E, Tallo, V, Shrivastava, J, Lu, DB, Basanez, M-G, Olveda, R, McGarvey, ST, Webster, JP (2008) Population Genetics of Schistosoma japonicum within the Philippines Suggest High Levels of Transmission between Humans and Dogs. Plos Neglect Trop D 2: pp. e340 CrossRef
    13. Woodruff, DS, Merenlender, AM, Upatham, ES, Viyanant, V (1987) Genetic variation and differentiation of three Schistosoma species from the Philippines, Laos and Peninsular Malaysia. Am J Trop Med Hyg 36: pp. 345-354
    14. Avise, J (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge, MA
    15. Avise, J (2004) Molecular markers, natural history and evolution. Sinuate, Sunderland, MA
    16. Allendorf, FW, Seeb, LW (2000) Concordance of genetic divergence among sockeye salmon populations at allozyme, nuclear DNA, and mitochondrial DNA markers. Evolution 54: pp. 640-651 CrossRef
    17. Lu, G, Basley, DJ, Bernatchez, L (2001) Contrasting patterns of mitochondrial DNA and microsatellite introgressive hybridization between lineages of lake whitefish (Coregonus clupeaformis); relevance for speciation. Mol Ecol 10: pp. 965-985 CrossRef
    18. Ventura, M, Petrusek, A, Miro, A, Hamrova, E, Bunay, D, Meester, L (2014) Local and regional founder effects in lake zooplankton persist after thousands of years despite high dispersal potential. Mol Ecol 23: pp. 1014-1027 CrossRef
    19. Cummings, MP, Otto, SP, Wakeley, J (1995) Sampling properties of DNA sequence data in phylogenetic analysis. Mol Biol Evol 12: pp. 814-822
    20. Rieseberg, LH (1998) Molecular ecology of hybridization. Advances in molecular ecology. Ios Press, Amsterdam
    21. Yin, MB, Hu, W, Mo, XJ, Wang, SY, Brindley, PJ, McManus, DP (2008) Multiple near-identical genotypes of Schistosoma japonicum can occur in snails and have implications for population-genetic analyses. Int J Parasitol 38: pp. 1681-1691 CrossRef
    22. Excoffier, L, Laval, G, Schneider, S (2005) Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol Bioinform 1: pp. 47-50
    23. Tamura, K, Dudley, J, Nei, M, Kumar, S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: pp. 1596-1599 CrossRef
    24. Bandelt, HJ, Forster, P, Rohl, A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: pp. 37-48 CrossRef
    25. Librado, P, Rozas, J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: pp. 1451-1452 CrossRef
    26. Rousset, F (2008) GENEPOP 鈥?007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resour 8: pp. 103-106 CrossRef
    27. Pritchard, JK, Stephens, M, Donnelly, P (2000) Inference of population structure using multilocus genotype data. Genetics 155: pp. 945-959
    28. Evanno, G, Regnaut, S, Goudet, J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: pp. 2611-2620 CrossRef
    29. Fan, P-C (2006) The history of schistosomiasis japonica in Taiwan. Kaohsiung J Med Sci 22: pp. 309-320 CrossRef
    30. Anou, N, Yanwen, X, Youren, F (2002) Schistosoma japonicum strains: Differentiation by RAPD and SSR-PCR. Southeast Asian J Trop Med Public Health 33: pp. 720-724
    31. Zhao, QP, Sen Jiang, M, Littlewood, DTJ, Nie, P (2010) Distinct Genetic Diversity of Oncomelania hupensis, Intermediate Host of Schistosoma japonicum in Mainland China as Revealed by ITS Sequences. Plos Neglect Trop D 4: pp. e611 CrossRef
    32. Liu, Y, Lou, T, Wang, Y, Zhang, W (1981) Subspecies difference of oncomelaniid snails. Acta Zootaxonm Sin 6: pp. 253-267
    33. Zhou, XN (1994) Population genetics morphology and distribution of Oncomelania hupensis, intermediate host of Schistosoma japonicum in mainland China. University of Copenhagen, Copenhagen
    34. Saijuntha, W, Jarilla, B, Leonardo, A, Sunico, L, Leonardo, L, Andrews, R (2014) Genetic Structure Inferred from Mitochondrial 12S Ribosomal RNA Sequence of Oncomelania quadrasi, the Intermediate Snail Host of Schistosoma japonicum in the Philippines. Am J Trop Med Hyg 90: pp. 1140-1145 CrossRef
    35. Seto, E, Xu, B, Liang, S, Gong, P, Wu, WP, Davis, G (2002) The use of remote sensing for predictive modeling of schistosomiasis in China. Photogramm Eng Remote Sensing 68: pp. 167-174
    36. Rudge, JW, Lu, DB, Fang, GR, Wang, TP, Basanez, MG, Webster, JP (2009) Parasite genetic differentiation by habitat type and host species: molecular epidemiology of Schistosoma japonicum in hilly and marshland areas of Anhui Province. China Mol Ecol 18: pp. 2134-2147 CrossRef
    37. Thiele, EA, Sorensen, RE, Gazzinelli, A, Minchella, DJ (2008) Genetic diversity and population structuring of Schistosoma mansoni in a Brazilian village. Int J Parasitol 38: pp. 389-399 CrossRef
  • 刊物主题:Parasitology; Infectious Diseases; Tropical Medicine; Entomology;
  • 出版者:BioMed Central
  • ISSN:1756-3305
文摘
Background Schistosoma japonicum is a significant public health risk in parts of China and elsewhere in Southeast Asia. To gain an insight into the epidemiology of schistosomiasis japonica, a detailed investigation of S. japonicum genetic population structure is needed. Methods Using three mitochondrial DNA fragments and ten microsatellite loci, we investigated the genetic diversity within and structure among twelve populations of S. japonicum sampled on a geographical scale covering most major endemic areas. Results Schistosoma japonicum lineages from Indonesia, the Philippines and Chinese Taiwan were clearly distinct from each other and from those in mainland China. Within mainland China, there was some evidence for genetic divergence between populations from the mountain and lake regions. However, the analysis inferred no clear sub-population structure in the lake region of mainland China. High genetic diversity was found among S. japonicum populations of mainland China and this was significantly higher than those from island regions. Conclusions High genetic diversity within and substantial differentiation among populations were demonstrated in S. japonicum.

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