Relationship between honeybee nutrition and their microbial communities
详细信息 查看全文
- 作者：Miriane Acosta Saraiva (1)
Ana Paula Pegoraro Zemolin (1)
Jeferson Luis Franco (1)
Juliano Tomazzoni Boldo (1)
Valdir Marcos Stefenon (1)
Eric W. Triplett (2)
Fl谩vio Anast谩cio de Oliveira Camargo (3)
Luiz Fernando Wurdig Roesch (1)
1. Universidade Federal do PAMPA ; Campus S茫o Gabriel ; Avenida Ant么nio Trilha ; 1847 ; S茫o Gabriel ; Rio Grande do Sul ; 97300-000 ; Brazil
2. Microbiology and Cell Science Department ; Institute of Food and Agricultural Sciences ; University of Florida ; Gainesville ; FL ; 32611-0700 ; USA
3. Departamento de Solos ; Universidade Federal do Rio Grande do Sul ; Av. Bento Gon莽alves ; 7712 ; Porto Alegre ; Rio Grande do Sul ; 91540-000 ; Brazil - 关键词：Post ; Light鈩?ion semiconductor sequencing ; Microbial functional prediction ; Microbial phylogeny ; Africanized honeybee ; Apis mellifera ; 16S rRNA
- 刊名：Antonie van Leeuwenhoek
- 出版年：2015
- 出版时间：April 2015
- 年：2015
- 卷：107
- 期：4
- 页码：921-933
- 全文大小：2,438 KB
- 参考文献：1. Adbi, H (2007) Encyclopedia of measurement and statistics. Sage, Thousand Oaks
2. Anderson, KE, Sheehan, TH, Mott, BM, Maes, P, Snyder, L, Schwan, MR, Walton, BM, Jones, BM, Corby-Harris, V (2013) Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera). PLoS One 8: pp. e83125 CrossRef
3. Bawa, KS (1990) Plant鈥損ollinator interactions in tropical rain forests. Annu Rev Ecol Syst 21: pp. 399-422 CrossRef
4. Bawa, KS, Bullock, SH, Perry, DR, Coville, RE, Grayum, MH (1985) Reproductive biology of tropical lowland Rain Forest Trees. II. Pollination systems. Am J Bot 72: pp. 346-356 CrossRef
5. Bluman, AG (2007) Elementary statistics: a step by step approach. McGraw Hill Higher Education, New York
6. Caporaso, JG, Kuczynski, J, Stombaugh, J, Bittinger, K, Bushman, FD, Costello, EK, Knight, R (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: pp. 335-336 CrossRef
7. Caporaso, JG, Lauber, CL, Walters, WA, Berg-Lyons, D, Huntley, J, Fierer, N, Knight, R (2012) Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 6: pp. 1621-1624 CrossRef
8. Chen, VB, Davis, IW, Richardson, DC (2009) KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program. Prot Sci 18: pp. 2403-2409 CrossRef
9. Corby-Harris, V, Maes, P, Anderson, KE (2014) The bacterial communities associated with honey bee (Apis mellifera) foragers. PLoS One 9: pp. e95056 CrossRef
10. Cox-Foster, DL, Conlan, S, Holmes, EC, Palacios, G, Evans, JD, Moran, NA, Quan, PL, Briese, T, Hornig, M, Geiser, DM, Martinson, V, Engelsdorp, D, Kalkstein, AL, Drysdale, A, Hui, J, Zhai, J, Cui, L, Hutchison, SK, Simons, JF, Egholm, M, Pettis, JS, Lipkin, WI (2007) A metagenomic survey of microbes in honey bee colony collapse disorder. Science 318: pp. 283-287 CrossRef
11. Edgar, RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: pp. 2460-2461 CrossRef
12. Ellis, JS, Knight, ME, Darvill, B, Goulson, D (2006) Extremely low effective population sizes, genetic structuring and reduced genetic diversity in a threatened bumblebee species, Bombus sylvarum (Hymenoptera: Apidae). Mol Ecol 15: pp. 4375-4386 CrossRef
13. Engel, P, Martinson, VG, Moran, NA (2012) Functional diversity within the simple gut microbiota of the honey bee. Proc Natl Acad Sci USA 109: pp. 11002-11007 CrossRef
14. Forsgren, E, Olofsson, TC, V谩squez, A, Fries, I (2010) Novel lactic acid bacteria inhibiting Paenibacillus larvae in honey bee larvae. Apidologie 41: pp. 99-108 CrossRef
15. Gilliam, M (1979) Microbiology of pollen and beebread: the yeasts. Apidologie 10: pp. 43-53 CrossRef
16. Good IJ (1953) The population frequencies of species and the estimation of population parameters. Biometrica 40:237鈥?64
17. Guengerich, FP (2007) Cytochrome P450 and chemical toxicology. Chem Res Toxicol 21: pp. 70-83 CrossRef
18. Hamady, M, Walker, JJ, Harris, JK, Gold, NJ, Knight, R (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5: pp. 235-237 CrossRef
19. Heard, TA (1999) The role of stingless bees in crop pollination. Annu Rev Entomol 44: pp. 183-206 CrossRef
20. Keijser, BJ, Zaura, E, Huse, SM, Vossen, JM, Schuren, FH, Montijn, RC, Crielaard, W (2008) Pyrosequencing analysis of the oral microflora of healthy adults. J Dent Res 87: pp. 1016-1020 154405910808701104" target="_blank" title="It opens in new window">CrossRef
21. Koch, H, Schmid-Hempel, P (2011) Bacterial communities in central European bumblebees: low diversity and high specificity. Microb Ecol 62: pp. 121-133 CrossRef
22. Langille, MG, Zaneveld, J, Caporaso, JG, McDonald, D, Knights, D, Reyes, JA, Huttenhower, C (2013) Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol 31: pp. 814-821 CrossRef
23. Lemos, LN, Fulthorpe, RR, Triplett, EW, Roesch, LFW (2011) Rethinking microbial diversity analysis in the high-throughput sequencing era. J Microbiol Methods 86: pp. 42-51 CrossRef
24. Liu, J, Tawa, GJ, Wallqvist, A (2013) Identifying cytochrome p450 functional networks and their allosteric regulatory elements. PLoS One 8: pp. e81980 CrossRef
25. Martinson, VG, Danforth, BN, Minckley, RL, Rueppell, O, Tingek, S, Moran, NA (2011) A simple and distinctive microbiota associated with honey bees and bumble bees. Mol Ecol 20: pp. 619-628 CrossRef
26. McFrederick, QS, Wcislo, WT, Taylor, DR, Ishak, HD, Dowd, SE, Mueller, UG (2012) Environment or kin: whence do bees obtain acidophilic bacteria?. Mol Ecol 21: pp. 1754-1768 CrossRef
27. Moran, NA, Hansen, AK, Powell, JE, Sabree, ZL (2012) Distinctive gut microbiota of honey bees assessed using deep sampling from Individual worker bees. PLoS One 7: pp. e36393 CrossRef
28. Parks, DH, Beiko, RG (2010) Identifying biologically relevant differences between metagenomic communities. Bioinformatics 26: pp. 715-721 CrossRef
29. Rothberg, JM, Hinz, W, Rearick, TM, Schultz, J, Mileski, W, Davey, M, Bustillo, J (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475: pp. 348-352 CrossRef
30. Roulston, TH, Cane, JH (2000) Pollen nutritional content and digestibility for animals. Plant Syst Evol 222: pp. 187-209 CrossRef
31. Schloss, PD, Westcott, SL, Ryabin, T, Hall, JR, Hartmann, M, Hollister, EB, Weber, CF (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: pp. 7537-7541 1541-09" target="_blank" title="It opens in new window">CrossRef
32. Schloss, PD, Gevers, D, Westcott, SL (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6: pp. e27310 CrossRef
33. Shannon, P, Markiel, A, Ozier, O, Baliga, NS, Wang, JT, Ramage, D, Ideker, T (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: pp. 2498-2504 CrossRef
34. Shipp, JL, Whitfield, GH, Papadopoulos, AP (1994) Effectiveness of the bumble bee, Bombus impatiens Cr. (Hymenoptera: Apidae), as a pollinator of greenhouse sweet pepper. Sci Hort 57: pp. 29-39 CrossRef
35. Singh, B, Mitchison, DA (1954) Bactericidal activity of streptomycin and isoniazid against tubercle bacilli. Br Med J 1: pp. 130-132 CrossRef
36. Sogin, ML, Morrison, HG, Huber, JA, Mark Welch, D, Huse, SM, Neal, PR, Herndl, GJ (2006) Microbial diversity in the deep sea and the underexplored 鈥渞are biosphere鈥? Proc Natl Acad Sci USA 103: pp. 12115-12120 CrossRef
37. Vojvodic, S, Rehan, SM, Anderson, KE (2013) Microbial gut diversity of Africanized and European honey bee larval instars. PLoS One 8: pp. e72106 CrossRef
38. Wang, Q, Garrity, GM, Tiedje, JM, Cole, JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: pp. 5261-5267 CrossRef
39. Weinstein, JN, Myers, TG, O鈥機onnor, PM, Friend, SH, Fornace, AJ, Kohn, KW, Paull, KD (1997) An information-intensive approach to the molecular pharmacology of cancer. Science 275: pp. 343-349 CrossRef
40. Whitfield, CW, Behura, SK, Berlocher, SH, Clark, AG, Johnston, JS, Sheppard, WS, Tsutsui, ND (2006) Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera. Science 314: pp. 642-645 CrossRef - 刊物类别：Biomedical and Life Sciences
- 刊物主题：Life Sciences
Microbiology
Medical Microbiology
Plant Sciences
Soil Science and Conservation - 出版者：Springer Netherlands
- ISSN：1572-9699
文摘