qLTG-9, a stable quantitative trait locus for low-temperature germination in rice (Oryza sativa L.)

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• 作者：Linfang Li (1)
  Xi Liu (1)
  Kun Xie (1)
  Yihua Wang (1)
  Feng Liu (1)
  Qiuyun Lin (1)
  Wenyan Wang (1)
  Chunyan Yang (1)
  Bingyue Lu (1)
  Shijia Liu (1)
  Liangming Chen (1)
  Ling Jiang (1)
  Jianmin Wan (1) (2)
  
• 刊名：Theoretical and Applied Genetics
• 出版年：2013
• 出版时间：September 2013
• 年：2013
• 卷：126
• 期：9
• 页码：2313-2322
• 全文大小：603KB
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• 作者单位：Linfang Li (1)
  Xi Liu (1)
  Kun Xie (1)
  Yihua Wang (1)
  Feng Liu (1)
  Qiuyun Lin (1)
  Wenyan Wang (1)
  Chunyan Yang (1)
  Bingyue Lu (1)
  Shijia Liu (1)
  Liangming Chen (1)
  Ling Jiang (1)
  Jianmin Wan (1) (2)
  
  1. State Key Laboratory of Crop Genetics and Germplasm Enhancement, Agriculture Ministry Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in Mid-lower Yangtse River, Nanjing Agricultural University, Nanjing, 210095, China
  2. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
  
• ISSN：1432-2242

文摘

Low-temperature germination (LTG) is an important agronomic trait for direct seeding of rice in temperate regions of East Asia. To dissect the genetic control of LTG, we constructed a recombinant inbred line (RIL) population derived from a cross of japonica variety USSR5 and indica variety N22. Three putative QTL involved in LTG were detected and named qLTG-7, qLTG-9 and qLTG-12. They explained 9.5, 12.12 and 7.08?% of the phenotypic variation, respectively, and the alleles from USSR5 enhanced LTG. A set of advanced backcross lines selected for the presence of qLTG-9 (with the biggest contribution of the three QTL), by both linked markers and phenotype, was used to validate qLTG-9 in different generations, years and locations. A near-isogenic line in USSR5 background with a qLTG-9 insertion from N22 had retarded germination under low-temperature conditions. Finally, qLTG-9 was fine mapped between markers L9-25D and ID-1, to a 72.3-kb region in chromosome 9, which in the Nipponbare genome contains five predicted genes. This result provides a springboard for map-based cloning of qLTG-9 and is helpful in understanding the mechanism of seed germination under low-temperature conditions.