Bacteria or melanosomes? A geochemical analysis of micro-bodies on a tadpole from the Oligocene Enspel Formation of Germany
详细信息    查看全文
  • 作者:Holly E. Barden (1)
    Uwe Bergmann (2)
    Nicholas P. Edwards (1)
    Victoria M. Egerton (1)
    Phillip L. Manning (1)
    Sarah Perry (1)
    Arjen van Veelen (1)
    Roy A. Wogelius (1)
    Bart E. van Dongen (1)

    1. School of Earth
    ; Atmospheric ; and Environmental Sciences ; Williamson Research Centre for Molecular Environmental Science ; University of Manchester ; Oxford Rd ; Manchester ; M13 9PL ; UK
    2. SLAC National Accelerator Laboratory
    ; Stanford Synchrotron Radiation Lightsource ; Menlo Park ; CA ; 94025 ; USA
  • 关键词:Enspel ; Bacterial autolithification ; Amphibian ; Melanin ; Melanosomes ; Geochemistry
  • 刊名:Palaeobiodiversity and Palaeoenvironments
  • 出版年:2015
  • 出版时间:March 2015
  • 年:2015
  • 卷:95
  • 期:1
  • 页码:33-45
  • 全文大小:4,962 KB
  • 参考文献:1. Ann茅 J, Edwards NP, Wogelius RA, Tumarkin-Deratzian AR, Sellers WI, van Veelen A, Bergmann U, Sokaras D, Alonso-Mori R, Ignatyev K, Egerton VM, Manning PL (2014) Synchrotron imaging reveals bone healing and remodelling strategies in extinct and extant vertebrates. J R Soc Interface 11(96). doi:10.1098/rsif.2014.0277
    2. Barden HE, Wogelius RA, Li D, Manning PL, Edwards NP, van Dongen BE (2011) Morphological and geochemical evidence of eumelanin preservation in the feathers of the Early Cretaceous bird, / Gansus yumenensis. PLoS One 6(10):e25,494. doi:10.1371/journal.pone.0025494
    3. Bergmann U, Manning PL, Wogelius RA (2012) Chemical mapping of paleontological and archeological artifacts with synchrotron x-rays. Annu Rev Anal Chem 5(1):361鈥?89. doi:10.1146/annurev-anchem-062011-143019 , pMID:22524223 CrossRef
    4. Briggs DEG, Wilby PR (1996) The role of the calcium carbonate-calcium phosphate switch in the mineralization of soft-bodied fossils. J Geol Soc London 153(5):665鈥?68. doi:10.1144/gsjgs.153.5.0665 CrossRef
    5. Briggs DEG, Wilby PR, Perez-Moreno BP, Sanz JL, Fregenal-Martinez M (1997) The mineralization of dinosaur soft tissue in the Lower Cretaceous of Las Hoyas, Spain. J Geol Soc London 154:587鈥?88. doi:10.1144/gsjgs.154.4.0587
    6. Briggs DEG, Moore RA, Shultz JW, Schweigert G (2005) Mineralization of soft-part anatomy and invading microbes in the horseshoe crab / Mesolimulus from the Upper Jurassic Lagerstatte of Nusplingen, Germany. P R Soc B 272(1563):62732. doi:10.1098/rspb.2004.3006 CrossRef
    7. Brinckerhoff CE, Matrisian LM (2002) Matrix metalloproteinases: a tail of a frog that became a prince. Nat Rev Mol Cell Bio 3(March):207鈥?14. doi:10.1038/nrm763 CrossRef
    8. Carney RM, Vinther J, Shawkey MD, D鈥橝lba L, Ackermann J (2012) New evidence on the colour and nature of the isolated / Archaeopteryx feather. Nat Commun 3:637. doi:10.1038/ncomms1642 CrossRef
    9. Clarke JA, Ksepka DT, Salas-Gismondi R, Altamirano AJ, Shawkey MD, D鈥橝lba L, Vinther J, DeVries TJ, Baby P (2010) Fossil evidence for evolution of the shape and color of penguin feathers. Science 330(6006):954鈥?57. doi:10.1126/science.1193604 CrossRef
    10. Cristol D, Armstrong J, Whitaker J, Forsyth M (2005) Feather-degrading bacteria do not affect feathers on captive birds. Auk 122(1):222鈥?30. doi:10.1642/0004-8038(2005)122[0222:FBDNAF]2.0.CO;2 CrossRef
    11. Downs RT (2006) The RRUFF Project: an integrated study of the chemistry, crystallography, Raman and infrared spectroscopy of minerals. In: 19th General Meeting of the International Mineralogical Association, Kobe, pp O03鈥揙13
    12. Dworzanski JP, Debowski M (1985) Pyrolysis-gas chromatography of pheomelanins. J Anal Appl Pyrol 8:463鈥?72. doi:10.1016/0165-2370(85)80044-9 CrossRef
    13. Edwards NP, Manning PL, Bergmann U, Larson PL, van Dongen BE, Sellers WI, Webb SM, Sokaras D, Alonso-Mori R, Ignatyev K, Barden HE, van Veelen A, Ann茅 J, Egerton VM, Wogelius RA (2014) Leaf metallome preserved over 50 million years. Metallomics 6:774鈥?82. doi:10.1039/C3MT00242J CrossRef
    14. Franzen JL (1985) Exceptional preservation of Eocene vertebrates in the lake deposit exceptional preservation of Grube Messel (West Germany). Philos T Roy Soc B 311(1148):181鈥?86. doi:10.1098/rstb.1985.0150 CrossRef
    15. Gehling JG (1999) Microbial mats in terminal Proterozoic siliciclastics; Ediacaran death masks. Palaios 14(1):40鈥?7. doi:10.2307/3515360 CrossRef
    16. Glass K, Ito S, Wilby PR, Sota T, Nakamura A, Bowers CR, Vinther J, Dutta S, Summons R, Briggs DEG, Wakamatsu K, Simon JD (2012) Direct chemical evidence for eumelanin pigment from the Jurassic period. Proc Natl Acad Sci U S A 109(26):10,218鈥?3. doi:10.1073/pnas.1118448109 CrossRef
    17. Gosner KL (1960) A simplified table for staging anuran embryos and larvae with notes on identification. Herpetologica 16:183鈥?90
    18. Gross J, Lapiere CM (1962) Collagenolytic activity in amphibian tissue: a tissue culture assay. Proc Natl Acad Sci U S A 48:1014鈥?022 CrossRef
    19. Gupta NS, Briggs DEG, Collinson ME, Evershed RP, Michels R, Jack KS, Pancost RD (2007a) Evidence for the in situ polymerisation of labile aliphatic organic compounds during the preservation of fossil leaves: implications for organic matter preservation. Org Geochem 38(3):499鈥?22. doi:10.1016/j.orggeochem.2006.06.011 CrossRef
    20. Gupta NS, Briggs DEG, Collinson ME, Evershed RP, Michels R, Pancost RD (2007b) Molecular preservation of plant and insect cuticles from the Oligocene Enspel Formation, Germany: evidence against derivation of aliphatic polymer from sediment. Org Geochem 38(3):404鈥?18. doi:10.1016/j.orggeochem.2006.06.012 CrossRef
    21. Gupta NS, Michels R, Briggs DG, Collinson ME, Evershed RP, Pancost RD (2007c) Experimental evidence for the formation of geomacromolecules from plant leaf lipids. Org Geochem 38(1):28鈥?6. doi:10.1016/j.orggeochem.2006.09.014 CrossRef
    22. Latocha M, Chodurek E, Kurkiewicz S, Swiatkowska L, Wilczok T (2000) Pyrolytic GC-MS analysis of melanin from black, gray and yellow strains of / Drosophila melanogaster. J Anal Appl Pyrol 56(1):89鈥?8. doi:10.1016/S0165-2370(00)00082-6 CrossRef
    23. Li Q, Gao KQ, Vinther J, Shawkey MD, Clarke JA, D鈥橝lba L, Meng Q, Briggs DEG, Prum RO (2010) Plumage color patterns of an extinct dinosaur. Science 327(5971):1369鈥?372. doi:10.1126/science.1186290 CrossRef
    24. Li Q, Gao KQ, Meng Q, Clarke JA, Shawkey MD, D鈥橝lba L, Pei R, Ellison M, Norell MA, Vinther J (2012) Reconstruction of microraptor and the evolution of iridescent plumage. Science 335(March):1215鈥?219. doi:10.1126/science.1213780 CrossRef
    25. Lindgren J, Uvdal P, Sj枚vall P, Nilsson DE, Engdahl A, Schultz BP, Thiel V (2012) Molecular preservation of the pigment melanin in fossil melanosomes. Nat Commun 3(may):824. doi: 10.10310.1126/science.12137808/ncomms1819
    26. Lindgren J, Sj枚vall P, Carney RM, Udval P, Gren JA, Dyke G, Schultz BP, Shawkey MD, Barnes KR, Polcyn MJ (2014) Skin pigmentation provides evidence of convergent melanism in extinct marine reptiles. Nature 506:484鈥?88. doi:10.1038/nature12899 CrossRef
    27. Liu Y, Hong L, Kempf VR, Wakamatsu K, Ito S, Simon JD (2004) Ion-exchange and adsorption of Fe(III) by Sepia melanin. Pigm Cell Res 17(3):262鈥?69. doi:10.1111/j.1600-0749.2004.00140.x CrossRef
    28. Liu Y, Hong L, Wakamatsu K, Adhyaru B, Cheng C, Bowers CR, Simon JD (2005) Comparisons of the structural and chemical properties of melanosomes isolated from retinal pigment epithelium, iris and choroid of newborn and mature bovine eyes. Photochem Photobiol 81:510鈥?16. doi:10.1562/2004-10-19-RA-345.1 CrossRef
    29. Manning PL, Morris PM, McMahon A, Jones E, Gize A, Macquaker JHS, Wolff G, Thompson A, Marshall J, Taylor KG, Lyson T, Gaskell S, Reamtong O, Sellers WI, van Dongen BE, Buckley M, Wogelius RA (2009) Mineralized soft-tissue structure and chemistry in a mummified hadrosaur from the Hell Creek Formation, North Dakota (USA). P R Soc B 276(1672):3429鈥?437. doi:10.1098/rspb.2009.0812 CrossRef
    30. McNamara ME, Orr PJ, Kearns SL, Alcal谩 L, Anad贸n P, Pe帽alver Moll谩 E (2006) High-fidelity organic preservation of bone marrow in ca. 10聽Ma amphibians. Geology 34(8):641 CrossRef
    31. McNamara ME, Orr PJ, Kearns SL, Alcal谩 L, Anad贸n P, Pe帽alver Moll谩 E (2009) Soft-tissue preservation in Miocene frogs from Libros, Spain: insights into the genesis of decay microenvironments. Palaios 24(2):104鈥?17. doi:10.2110/palo.2008.p08-017r CrossRef
    32. McNamara ME, Orr PJ, Kearns SL, Alcal谩 L, Anad贸n P, Pe帽alver Moll谩 E (2010) Exceptionally preserved tadpoles from the Miocene of Libros, Spain: ecomorphological reconstruction and the impact of ontogeny upon taphonomy. Lethaia 43(3):290鈥?06. doi:10.1111/j.1502-3931.2009.00192.x
    33. McNamara ME, Briggs DEG, Orr PJ, Field D, Wang Z (2013) Experimental maturation of feathers: implications for reconstructions of fossil feather colour. Biol Letters 9(3):20130,184. doi:10.1098/rsbl.2013.0184 CrossRef
    34. Meyer-Klaucke W, Paul Soto R, Hernandez Valladares M, Adolph HW, Nolting HF, Fr猫re JM, Zeppezauer M (1999) A comparison of / Bacillus cereus and / Aeromonas hydrophilia Zn-beta-lactamases. J Synchrotron Radiat 6(Pt 3):400鈥?02. doi:10.1107/S0909049598017816 CrossRef
    35. Moyer AE, Zheng W, Johnson EA, Lamanna MC, Li D, Lacovara KJ, Schweitzer MH (2014) Melanosomes or microbes: testing an alternative hypothesis for the origin of microbodies in fossil feathers. Sci Rep 4:4233. doi:10.1038/srep04233 CrossRef
    36. Outten CE, Da T, Penner-Hahn JE, O鈥橦alloran TV (2001) Characterization of the metal receptor sites in / Escherichia coli Zur, an ultrasensitive zinc(II) metalloregulatory protein. Biochem-US 40(35):10,417鈥?3. doi:10.1021/bi0155448 CrossRef
    37. Page-McCaw A, Ewald AJ, Werb Z (2007) Matrix metalloproteinases and the regulation of tissue remodelling. Nat Rev Mol Cell Bio 8(3):221鈥?33. doi:10.1038/nrm2125 CrossRef
    38. Prota G (1992) Melanins and melanogenesis. Academic聽press, Michigan
    39. Ravel B, Newville M (2005) ATHENA, ARTEMIS, HEPHAESTUS: data analysis for X-ray absorption spectroscopy using IFEFFIT. J Synchrotron Radiat 12(Pt 4):537鈥?41. doi:10.1107/S0909049505012719 CrossRef
    40. Roberts DR, Scheinost C, Sparks DL (2002) Zinc speciation in a smelter-contaminated soil profile using bulk and microspectroscopic techniques. Environ Sci Technol 36(8):1742鈥?750. doi:10.1021/es015516c CrossRef
    41. Robins AH (1991) Biological perspectives on human pigmentation. Cambridge University Press, New York CrossRef
    42. Ro膷ek Z (2003) Larval development in Oligocene palaeobatrachid frogs. Acta Palaeontol Pol 48(4):595鈥?07
    43. Schneider CA, Rasband WS, Eliceiri KW (2012) NIH image to ImageJ: 25聽years of image analysis. Nat Methods 9(7):671鈥?75. doi:10.1038/nmeth.2089 CrossRef
    44. Sol茅 V, Papillon E, Cotte M, Walter P, Susini J (2007) A multiplatform code for the analysis of energy-dispersive X-ray fluorescence spectra. Spectrochim Acta B 62(1):63鈥?8. doi:10.1016/j.sab.2006.12.002 CrossRef
    45. Stankiewicz BA, Briggs DEG, Michels R, Collinson ME, Flannery MB, Evershed RP (2000) Alternative origin of aliphatic polymer in kerogen. Geology 28(6):559鈥?62. doi:10.1130/0091-7613(2000)28<559:AOOAPI>2.0.CO;2 CrossRef
    46. Toporski J, Steele A, Westall F, Avci R, Martill DM, McKay DS (2002) Morphologic and spectral investigation of exceptionally well-preserved bacterial biofilms from the Oligocene Enspel formation, Germany. Geochim Cosmochim Ac 66(10):1773鈥?791. doi:10.1016/S0016-7037(01)00870-5 CrossRef
    47. Vinther J, Briggs DEG, Prum RO, Saranathan V (2008) The colour of fossil feathers. Biol Letters 4(5):522鈥?25. doi:10.1098/rsbl.2008.0302 CrossRef
    48. Waychunas G, Fuller C, Davis J, Rehr J (2003) Surface complexation and precipitate geometry for aqueous Zn(II) sorption on ferrihydrite: II. XANES analysis and simulation. Geochim Cosmochim Ac 67(5):1031鈥?043. doi:10.1016/S0016-7037(02)01280-2 CrossRef
    49. Webb SM (2005) SIXpack: a graphical user interface for XAS analysis using IFEFFIT. Phys Scripta 2005(T115):1011. doi:10.1238/Physica.Topical.115a01011 CrossRef
    50. Wilby PR, Briggs DEG, Bernier P, Gaillard C (1996) Role of microbial mats in the fossilization of soft tissues. Geology 24(9):787鈥?90. doi:10.1130/0091-7613(1996)024 0787:rommit 2.3.co;2 CrossRef
    51. Wogelius RA, Manning PL, Barden HE, Edwards NP, Webb SM, Sellers WI, Taylor KG, Larson PL, Dodson P, You H, Da-qing L, Bergmann U (2011) Trace metals as biomarkers for eumelanin pigment in the fossil record. Science 333(6049):1622鈥?626. doi:10.1126/science.1205748 CrossRef
    52. Wolnicka-Glubisz A, Pecio A, Podkowa D, Kolodziejczyk LM, Plonka PM (2012) Pheomelanin in the skin of / Hymenochirus boettgeri (Amphibia: Anura: Pipidae). Exp Dermatol 21(7):537鈥?40. doi:10.1111/j.1600-0625.2012.01511.x CrossRef
    53. Wuttke M (1983) Weichteilerhaltung durch lithifizierte Mikroorganismen bei mittel-eoz盲nen Vertebraten aus dem 脰lschiefer der 鈥淕rube Messel鈥?bei Darmstadt. Senck leth 64:503鈥?27
    54. Wuttke M (1992) Messel: an insight into the history of life and of the earth. In: Schaal S, Ziegler W (eds) Conservation-dissolution-transformation. On the behaviour of biogenic materials during fossilization, vol 24, Wuttke M. Clarendon, Oxford, pp 263鈥?75
    55. Zhang F, Kearns SL, Orr PJ, Benton MJ, Zhou Z, Johnson D, Xu X, Wang X (2010) Fossilized melanosomes and the colour of cretaceous dinosaurs and birds. Nature 463(7284):1075鈥?078. doi:10.1038/nature08740 CrossRef
  • 刊物主题:Paleontology; Biodiversity; Animal Systematics/Taxonomy/Biogeography; Plant Systematics/Taxonomy/Biogeography; Freshwater & Marine Ecology;
  • 出版者:Springer Berlin Heidelberg
  • ISSN:1867-1608
文摘
Many exceptionally preserved fossils have long been thought the product of preservation by bacterial autolithification, based largely upon the presence of, micron-sized, spherical or elongate bodies on their surface. This has recently been challenged by studies of similar fossils which cite morphological and geochemical evidence that these structures could be fossilized melanosomes, melanin-containing organelles. We geochemically analysed a tadpole from the Oligocene Enspel Formation, Germany, which displays such spherical bodies on its surface. Pyrolysis gas chromatography mass spectroscopy (Py-GCMS) and Fourier transform infrared spectrometry (FTIR) indicate that the organic remains of the tadpole are original and are not the result of external contamination, shown by the different chemical compositions of the fossil and its enclosing matrix. Py-GCMS also demonstrates the presence of bacterial and plant biomarkers in the matrix but not the tadpole, suggesting that the spherical bodies are unlikely to be bacterial, and also that such fossils do not develop their dark colour from incorporating plant material, as has been suggested. X-ray absorption spectroscopy (XAS) shows high levels of organically bound Zn(II) in the fossilized soft tissue, a metal known to chelate both eu- and pheomelanin. The zinc in the tadpole shows greater similarity to that bound in pheomelanized extant samples than to that in eumelanized ones. Though further geochemical analysis of both pure pheomelanin and bacterial samples is required to completely exclude a bacterial origin, these results are in line with a pheomelanic origin for the spherical bodies on the tadpole.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700