Direct determination of the chromosomal location of bunching onion and bulb onion markers using bunching onion–shallot monosomic additions and allotriploid-bunching onion single alien deletions
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- 作者：Hikaru Tsukazaki (1)
Ken-ichiro Yamashita (1)
Shigenori Yaguchi (2) (3)
Koichiro Yamashita (4)
Takuya Hagihara (4)
Masayoshi Shigyo (2)
Akio Kojima (1)
Tadayuki Wako (1) - 关键词：Allium cepa ; Allium fistulosum ; Chromosome identity ; Linkage map ; Monosomic addition lines ; Single alien deletion lines
- 刊名：Theoretical and Applied Genetics
- 出版年：2011
- 出版时间：February 2011
- 年：2011
- 卷：122
- 期：3
- 页码：501-510
- 全文大小：328KB
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Ken-ichiro Yamashita (1)
Shigenori Yaguchi (2) (3)
Koichiro Yamashita (4)
Takuya Hagihara (4)
Masayoshi Shigyo (2)
Akio Kojima (1)
Tadayuki Wako (1)
1. National Institute of Vegetable and Tea Science (NIVTS), NARO, 360 Ano-Kusawa, Tsu, Mie, 514-2392, Japan
2. Department of Biological and Environmental Science, Faculty of Agriculture, Yamaguchi University, 1677-1 Yoshida, Yamaguchi, Yamaguchi, 753-8515, Japan
3. Toricon Co., Ltd, Nakano 3825-8, Ohnan, Ohchi, Shimane, 696-0102, Japan
4. Hokuren Agricultural Research Institute, Minami2, Higashi9, Naganuma, Hokkaido, 069-1316, Japan - ISSN：1432-2242
文摘
To determine the chromosomal location of bunching onion (Allium fistulosum L.) simple sequence repeats (SSRs) and bulb onion (A. cepa L.) expressed sequence tags (ESTs), we used a complete set of bunching onion–shallot monosomic addition lines and allotriploid bunching onion single alien deletion lines as testers. Of a total of 2,159 markers (1,198 bunching onion SSRs, 324 bulb onion EST–SSRs and 637 bulb onion EST-derived non-SSRs), chromosomal locations were identified for 406 markers in A. fistulosum and/or A. cepa. Most of the bunching onion SSRs with identified chromosomal locations showed polymorphism in bunching onion (89.5%) as well as bulb onion lines (66.1%). Using these markers, we constructed a bunching onion linkage map (1,261?cM), which consisted of 16 linkage groups with 228 markers, 106 of which were newly located. All linkage groups of this map were assigned to the eight basal Allium chromosomes. In this study, we assigned 513 markers to the eight chromosomes of A. fistulosum and A. cepa. Together with 254 markers previously located on a separate bunching onion map, we have identified chromosomal locations for 766 markers in total. These chromosome-specific markers will be useful for the intensive mapping of desirable genes or QTLs for agricultural traits, and to obtain DNA markers linked to these.