Relationships among Asian persimmon cultivars, astringent and non-astringent types
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  • 作者:Dan E. Parfitt (1)
    Keizo Yonemori (2)
    Chitose Honsho (3)
    Mitsunori Nozaka (2)
    Shinya Kanzaki (4)
    Akihiko Sato (5)
    Masahiko Yamada (6)

    1. Department of Plant Sciences
    ; MS 2 ; University of California ; Davis ; CA ; 95616-8780 ; USA
    2. Laboratory of Pomology
    ; Graduate School of Agriculture ; Kyoto University ; Sakyo-ku ; Kyoto ; 606-8502 ; Japan
    3. Laboratory of Pomology
    ; Faculty of Agriculture ; University of Miyazaki ; Miyazaki ; 889-2192 ; Japan
    4. Laboratory of Horticultural Science
    ; Faculty of Agriculture ; Kinki University ; Nakamachi ; Nara ; 631-8505 ; Japan
    5. Grape and Persimmon Research Station
    ; National Institute of Fruit Tree Science ; National Agriculture and Food Research Organization ; Higashi ; Hiroshima ; 739-2494 ; Japan
    6. National Institute of Fruit Tree Science
    ; National Agriculture and Food Research Organization ; Tsukuba ; 305-8605 ; Japan
  • 关键词:Diospyros kaki ; AFLP polymorphism ; Cluster analysis ; AMOVA ; Structure
  • 刊名:Tree Genetics & Genomes
  • 出版年:2015
  • 出版时间:April 2015
  • 年:2015
  • 卷:11
  • 期:2
  • 全文大小:1,494 KB
  • 参考文献:Investigation on persimmon cultivars (in Japanese). Bull Agric Res Stat (extra) 28: pp. 1-46
    1. Akagi, T, Kanzaki, S, Gao, M, Tao, R, Parfitt, DE, Yonemori, K (2009) Quantitative real-time PCR to determine allele number for the astringency locus by analysis of a linked marker in Diospyros kaki Thunb. Tree Genet Genomes 5: pp. 483-492 CrossRef
    2. Akagi, T, Takeda, Y, Yonemori, K, Ikegami, A, Kono, A, Yamada, M, Kanzaki, S (2010) Quantitative genotyping for the astringency locus in hexaploid persimmon cultivars using quantitative real-time PCR. J Am Soc Hort Sci 135: pp. 59-66
    3. Akagi, T, Tao, R, Tsujimoto, T, Kono, A, Yonemori, K (2012) Fine genotyping of a highly polymorphic ASTRINGENCY-linked locus reveals variable hexasomic inheritance in persimmon (Diospyros kaki Thunb) cultivars. Tree Genet Genomes 8: pp. 195-204 CrossRef
    4. Badenes, M, Garces, A, Romero, C, Romero, M, Clave, J, Rovira, M, Llacer, G (2003) Genetic diversity of introduced and local Spanish persimmon cultivars revealed by RAPD markers. Genet Resour Crop Evol 50: pp. 579-585 CrossRef
    5. Birren B, Green ED, Klapholz S, Myers RM, Roskams J (1997) Genome analysis: a laboratory manual 1:624
    6. Cho SK, Cho TH (1965) Studies on the local varieties of persimmon in Korea Research Reports of the Office of Rural Development (Suweon). 8:147鈥?90
    7. Doyle, JJ, Doyle, JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue Phytochemical Bulletin No 19. The Phytochemical Section of the Botanical Society of America, Irvine
    8. Du, X, Zhang, Q, Luo, Z (2009) Identification of a Chinese PVNA type of Japanese persimmon discovered from Dabieshan region in central China. Acta Horticult 833: pp. 97-102
    9. Excoffier, L, Laval, G, Schneider, S (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis Evolutionary. Bioinformatics 1: pp. 47-50
    10. Falush, D, Stephens, M, Pritchard, JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: pp. 1567-1587
    11. Guo, DL, Luo, ZR (2006) Genetic relationships of some PCNA persimmons (Diospyros kaki Thumb) from China and Japan revealed by SRAP analysis. Genet Resour Crop Evol 53: pp. 1597-1603 CrossRef
    12. Guo, DL, Luo, ZR (2011) Genetic relationships of the Japanese persimmon Diospyros kaki (Ebenaceae) and related species revealed by SSR analysis. Genet Mol Res 10: pp. 1060-1068 CrossRef
    13. Hume, H (1913) Effect of pollination on the fruit of Diospyros kaki. Proc Am Soc Hort Sci 10: pp. 88-93
    14. Hume, HH (1914) A kaki classification. J Hered 5: pp. 400-406
    15. Ikegami, A, Eguchi, S, Yonemori, K, Yamada, M, Sato, A, Mitani, N, Kitajima, A (2006) Segregations of astringent progenies in the F1 populations derived from crosses between a Chinese pollination-constant nonastringent (PCNA) 鈥楲uo Tian Tian Shi鈥? and Japanese PCNA and pollination-constant astringent (PCA) cultivars of Japanese origin. Hortic Sci 41: pp. 561-563
    16. Ikegami, A, Eguchi, S, Takashi, A, Sato, A, Yamada, M, Kanzaki, S, Kitajima, A, Yonemori, K (2011) Development of molecular markers linked to the allele associated with the non-astringent trait of the Chinese persimmon (Diospyros kaki Thunb). J Jpn Soc Hortic Sci 80: pp. 150-155 CrossRef
    17. Kajiura, (1946) Persimmon cultivars and their improvement 2 (in Japanese). Breed Hortic 1: pp. 175-182
    18. Kanzaki, S, Yonemori, K, Sato, A, Yamada, M, Sugiura, A (2000) Analysis of the genetic relationships among pollination-constant and non-astringent (PCNA) cultivars of persimmon (Diospyros kaki Thunb) from Japan and China using amplified fragment length polymorphism (AFLP). J Jpn Soc Hortic Sci 69: pp. 665-670 CrossRef
    19. Kanzaki, S, Yonemori, K, Sugiura, A, Sato, A, Yamada, M (2001) Identification of molecular markers linked to the trait of natural astringency loss of Japanese persimmon (Diospyros kaki) fruit. J Am Soc Hortic Sci 126: pp. 51-55
    20. Kanzaki, S, Akagi, T, Masuko, T, Kimura, M, Yamada, M, Sato, A, Mitani, N, Utsunomiya, N, Yonemori, K (2010) SCAR markers for practical application of marker-assisted selection in persimmon (Diospyros kaki Thunb) breeding. J Jpn Soc Hortic Sci 79: pp. 150-155 CrossRef
    21. Kikuchi, (1948) Pomology-part I (in Japanese). Yokendo, Tokyo
    22. Nei, M, Li, WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Soc USA 76: pp. 5269-5273 CrossRef
    23. Naval, MM, Zuriaga, E, Pecchioli, S, Llacer, G, Giordani, E, Badenes, ML (2010) Analysis of genetic diversity among persimmon cultivars using microsatellite markers. Tree Genet Genomes 6: pp. 677-687 CrossRef
    24. Pritchard, JK, Stephens, P, Donnelly, P (2000) Inference of population structure using multilocus genotype data. Genetics 155: pp. 945-959
    25. Pritchard JK, Wen X, Falush D (2007) Documentation for structure software: version 2.2 Available from http://pritchardlab.stanford.edu/structure.html
    26. Renzi W, Yong Y, Gaochao L (1997) Chinese persimmon germplasm resources. Acta Hortic 436:43鈥?0
    27. Rohlf, FJ (1998) NTSYS-PC numerical taxonomy and multivariate analysis system, Version 2.0. Exeter Publications Setauket, New York
    28. Roldan-Ruiz, I, Dendauw, J, Bockstaele, E, Depicker, A, DeLoose, M (2000) AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.). Mol Breed 6: pp. 125-134 CrossRef
    29. Tamura, M, Tao, R, Yonemori, K, Untunomia, N, Sugiura, A (1998) Ploidy level and genome size of several Diospyros species. J Jpn Soc Hortic Sci 67: pp. 306-312 CrossRef
    30. Peer, Y, Wachter, R (1994) TREECON for windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10: pp. 569-570
    31. Yamagishi, M, Matsumoto, S, Nakatuska, A, Itamura, H (2005) Identification of persimmon (Diospyros kaki) cultivars and phenetic relationships between Diospyros species by more effective RAPD analysis. Sci Hortic 105: pp. 283-290 CrossRef
    32. Yonemori, K, Honsho, C, Kitajima, A, Aradhya, M, Giordani, E, Bellini, E, Parfitt, DE (2008) Relationship of European persimmon (Diospyros kaki Thunb) cultivars to Asian cultivars, characterized using AFLPs. Genet Resour Crop Evol 55: pp. 81-89 CrossRef
    33. Yonemori, K, Ikegami, A, Kitajima, A, Luo, Z, Kanzaki, S, Sato, A, Yamada, M, Yong, Y, Wang, R (2005) Existence of several pollination constant non-astringent type persimmon in China. Acta Hortic 685: pp. 77-83
    34. Yonemori, K, Kanzaki, S, Honsho, C, Akagi, T, Parfitt, DE (2008) Phylogeny and cultivar development of Diospyros kaki: a survey based on molecular analyses. Adv Hortic Sci 22: pp. 261-268
    35. Yonemori K, Sugiura A, Yamada M (2000) Persimmon genetics and breeding. In: J Janick (ed) Plant Breeding Rev. Wiley, New York 19:191-225
  • 刊物主题:Forestry; Plant Genetics & Genomics; Plant Breeding/Biotechnology; Tree Biology; Biotechnology;
  • 出版者:Springer Berlin Heidelberg
  • ISSN:1614-2950
文摘
A molecular marker analysis for Asian persimmon cultivar relationships and pollination status was conducted with 496 amplified fragment length polymorphism (AFLP) markers and 146 cultivars of Asian origin. Cultivars from China, Korea, and Japan were evaluated for marker composition and pollination status, which strongly influences fruit characteristics. Separation of Chinese, Korean, and Japanese cultivar groups and pollination type by neighbor-joining clustering, multidimensional scaling, and STRUCTURE was only weakly supported and not genetically significant. Significant differences for cultivar origin and pollination status were found for analysis of molecular variance (AMOVA), but most of the variation was among cultivars, not classification groups. All of the cultivar groups were genetically similar at the molecular level with most polymorphism due to individual cultivar differences.

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