Gateways to the FANTOM5 promoter level mammalian expression atlas

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• 作者：Marina Lizio (1) (2)
  Jayson Harshbarger (1) (2)
  Hisashi Shimoji (1) (2)
  Jessica Severin (1) (2)
  Takeya Kasukawa (2)
  Serkan Sahin (1) (2)
  Imad Abugessaisa (2)
  Shiro Fukuda (1)
  Fumi Hori (1) (2)
  Sachi Ishikawa-Kato (1) (2)
  Christopher J Mungall (5)
  Erik Arner (1) (2)
  J Kenneth Baillie (7)
  Nicolas Bertin (1) (19) (2)
  Hidemasa Bono (10)
  Michiel de Hoon (1) (2)
  Alexander D Diehl (13)
  Emmanuel Dimont (12)
  Tom C Freeman (7)
  Kaori Fujieda (10)
  Winston Hide (12) (17)
  Rajaram Kaliyaperumal (8)
  Toshiaki Katayama (15)
  Timo Lassmann (1) (18) (2)
  Terrence F Meehan (6)
  Koro Nishikata (16)
  Hiromasa Ono (10)
  Michael Rehli (9)
  Albin Sandelin (11)
  Erik A Schultes (14) (8)
  Peter AC 鈥榯 Hoen (8)
  Zuotian Tatum (8)
  Mark Thompson (8)
  Tetsuro Toyoda (16)
  Derek W Wright (7)
  Carsten O Daub (1)
  Masayoshi Itoh (1) (2) (3)
  Piero Carninci (1) (2)
  Yoshihide Hayashizaki (1) (3)
  Alistair RR Forrest (1) (2)
  Hideya Kawaji (1) (2) (3) (4)
  the FANTOM consortium
  
• 刊名：Genome Biology
• 出版年：2015
• 出版时间：December 2015
• 年：2015
• 卷：16
• 期：1
• 全文大小：2,700 KB
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• 作者单位：Marina Lizio (1) (2)
  Jayson Harshbarger (1) (2)
  Hisashi Shimoji (1) (2)
  Jessica Severin (1) (2)
  Takeya Kasukawa (2)
  Serkan Sahin (1) (2)
  Imad Abugessaisa (2)
  Shiro Fukuda (1)
  Fumi Hori (1) (2)
  Sachi Ishikawa-Kato (1) (2)
  Christopher J Mungall (5)
  Erik Arner (1) (2)
  J Kenneth Baillie (7)
  Nicolas Bertin (1) (19) (2)
  Hidemasa Bono (10)
  Michiel de Hoon (1) (2)
  Alexander D Diehl (13)
  Emmanuel Dimont (12)
  Tom C Freeman (7)
  Kaori Fujieda (10)
  Winston Hide (12) (17)
  Rajaram Kaliyaperumal (8)
  Toshiaki Katayama (15)
  Timo Lassmann (1) (18) (2)
  Terrence F Meehan (6)
  Koro Nishikata (16)
  Hiromasa Ono (10)
  Michael Rehli (9)
  Albin Sandelin (11)
  Erik A Schultes (14) (8)
  Peter AC 鈥榯 Hoen (8)
  Zuotian Tatum (8)
  Mark Thompson (8)
  Tetsuro Toyoda (16)
  Derek W Wright (7)
  Carsten O Daub (1)
  Masayoshi Itoh (1) (2) (3)
  Piero Carninci (1) (2)
  Yoshihide Hayashizaki (1) (3)
  Alistair RR Forrest (1) (2)
  Hideya Kawaji (1) (2) (3) (4)
  the FANTOM consortium
  
  1. Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
  2. Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologie, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
  5. Genomics Division, Lawrence Berkeley National Laboratory, 84R01, 1 Cyclotron Road, Berkeley, CA, 94720, USA
  7. The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh, Midlothian, EH25 9RG, Scotland, UK
  19. Cancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore
  10. Database Center for Life Science, Research Organization of Information and Systems, 1111 Yata, Mishima, 411-8540, Japan
  13. Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, 701 Ellicott Street, Buffalo, NY, 14203, USA
  12. Department of Biostatistics, Harvard School of Public Health, 655 Huntington Avenue, Boston, MA, 02115, USA
  17. Sheffield Institute for Translational Neuroscience, University of Sheffield, 385a Glossop Road, Sheffield, S10 2HQ, UK
  8. Department of Human Genetics, BioSemantics Group, Leiden University Medical Center, Albinusdreef 2, Leiden, 2333 ZA, Netherlands
  15. Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Chiba, 277-0081, Japan
  18. Telethon Kids Institute, The University of Western Australia, Perth, Western Australia, 6008, Australia
  6. Mouse Informatics, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
  16. Integrated Database Unit, RIKEN Advanced Center for Computing and Communication, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan
  9. Department of Internal Medicine III, University Hospital Regensburg, F.-J.-Strauss Allee 11, Regensburg, D-93042, Germany
  11. Department of Biology & Biotech Research and Innovation Centre, Section for Computational and RNA Biology, Copenhagen University, Ole Maaloes Vej 5, Copenhagen, N DK2200, Denmark
  14. BioSemantics Group, Leiden Institute of Advanced Computer Science, Leiden University, 111 Snellius, Niels Bohrweg 1, Leiden, 2333, CA, Netherlands
  3. RIKEN Preventive Medicine and Diagnosis Innovation Program, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan
  4. Preventive medicine and applied genomics unit, RIKEN Advanced Center for Computing and Communication, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
  
• 刊物主题：Animal Genetics and Genomics; Human Genetics; Plant Genetics & Genomics; Microbial Genetics and Genomics; Fungus Genetics; Bioinformatics;
• 出版者：BioMed Central
• ISSN：1465-6906

文摘

The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.