Sequence variation at the three chloroplast loci (matK, rbcL, trnH-psbA) in the Triticeae tribe (Poaceae): comments on the relationships a

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• 作者：Wojciech Bieniek (1)
  Marta Mizianty (1)
  Marek Szklarczyk (2)
  
  1. Department of Vascular Plant Systematics and Phytogeography ; W. Szafer Institute of Botany ; Polish Academy of Sciences ; ul. Lubicz 46 ; 31-512 ; Krak贸w ; Poland
  2. Unit of Genetics ; Plant Breeding and Seed Science ; Institute of Plant Biology and Biotechnology ; Agricultural University of Krakow ; al. 29 Listopada 54 ; 31-425 ; Krak贸w ; Poland
  
• 关键词：Triticeae ; Chloroplast DNA ; Molecular phylogeny ; DNA barcoding
• 刊名：Plant Systematics and Evolution
• 出版年：2015
• 出版时间：April 2015
• 年：2015
• 卷：301
• 期：4
• 页码：1275-1286
• 全文大小：999 KB
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• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Plant Sciences
  Plant Ecology
  Plant Anatomy and Development
  Plant Systematics/Taxonomy/ Biogeography
  
• 出版者：Springer Wien
• ISSN：1615-6110

文摘

This study presents a phylogenetic analysis of the selected representatives of the Triticeae tribe and the assessment of possibilities of species identification on the basis of sequence variation in the three regions from the chloroplast DNA (matK, rbcL and trnH-psbA). The analysis included diploid and polyploid species of the following genomic compositions: E b , E e , H, I, Ns, St, Ta, Xu, NsXm, XoXr, XuXu, E b E e , E b E b E e , E b E e St, StH, StStH. The obtained matK and rbcL sequences revealed three well-supported clades: (1) Elymus, Lopophyrum, Pseudoroegneria, Thinopyrum (genomes E b , E e , St, StH, E b E e , E b E b E e , E b E e St, StStH); (2) Leymus, Hordelymus, Psathyrostachys (genomes Ns, NsXm, XoXr); (3) Hordeum (genomes H, I, Xu). This results support the view that the analyzed Elymus species (E. caninus, E. repens) acquired the Pseudoroegneria St genome maternally. They also indicate that Hordelymus europaeus carries the Ns genome from Psathyrostachys and point at the maternal origin of this component. Moreover, the presented results confirm the contribution of Psathyrostachys in the origin of Leymus as well as indicate the maternal character of this input. Differentiation observed within the Hordeum clade aligns with the alleged genome composition of the analyzed species. The DNA barcoding potential of the analyzed sequences was low. Nevertheless, several informative polymorphisms were found like e.g. the matK substitution specific for Thinopyrum bessarabicum, the trnH-psbA substitution differentiating Leymus arenarius from Psathyrostachys juncea and the group of species-specific deletions within trnH-psbA. In the DNA barcoding context we have also demonstrated negative importance of the high frequency cpDNA inversion leading to intraspecific variation.