Tamlana nanhaiensis sp. nov., isolated from surface seawater collected from the South China Sea
详细信息 查看全文
- 作者：Xiupian Liu ; Qiliang Lai ; Yaping Du ; Guangyu Li ; Fengqin Sun…
- 关键词：Tamlana nanhaiensis sp. nov. ; Surface seawater sample ; Taxonomy ; The South China Sea
- 刊名：Antonie van Leeuwenhoek
- 出版年：2015
- 出版时间：May 2015
- 年：2015
- 卷：107
- 期：5
- 页码：1189-1196
- 全文大小：269 KB
- 参考文献：1. Bowman, JP, McCammon, SA, Lewis, T, Skerratt, JH, Brown, JL, Nichols, DS, McMeekin, TA (1998) Psychroflexus torquis gen. nov., sp. nov. a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144: pp. 1601-1609 CrossRef
2. Felsenstein, J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: pp. 368-376 CrossRef
3. Goris, J, Konstantinidis, KT, Klappenbach, JA, Coenye, T, Vandamme, P, Tiedje, JM (2007) DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57: pp. 81-91 CrossRef
4. Jeong, SH, Park, MS, Jin, HM, Lee, K, Park, W, Jeon, CO (2013) Aestuariibaculum suncheonense gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a tidal flat and emended descriptions of the genera Gaetbulibacter and Tamlana. Int J Syst Evol Microbiol 63: pp. 332-338 CrossRef
5. Kim, O-S, Cho, Y-J, Lee, K, Yoon, S-H, Kim, M, Na, H, Park, S-C, Jeon, YS, Lee, J-H, Yi, H (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62: pp. 716-721 CrossRef
6. Kim, M, Oh, H-S, Park, S-C, Chun, J (2014) Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 64: pp. 346-351 CrossRef
7. Kimura, M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: pp. 111-120 CrossRef
8. Lai, Q, Yuan, J, Wu, C, Shao, Z (2009) Oceanibaculum indicum gen. nov., sp. nov., isolated from deep seawater of the Indian Ocean. Int J Syst Evol Microbiol 59: pp. 1733-1737 CrossRef
9. Lee, SD (2007) Tamlana crocina gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae, isolated from beach sediment in Korea. Int J Syst Evol Microbiol 57: pp. 764-769 CrossRef
10. Liu, C, Shao, Z (2005) Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55: pp. 1181-1186 CrossRef
11. Luo, R, Liu, B, Xie, Y, Li, Z, Huang, W, Yuan, J, He, G, Chen, Y, Pan, Q, Liu, Y (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1: pp. 18 CrossRef
12. Meier-Kolthoff, JP, Auch, AF, Klenk, HP, Goker, M (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14: pp. 60 CrossRef
13. Meier-Kolthoff, JP, G?ker, M, Spr?er, C, Klenk, H-P (2013) When should a DDH experiment be mandatory in microbial taxonomy?. Arch Microbiol 195: pp. 413-418 CrossRef
14. Moore, L, Moore, E, Murray, R, Stackebrandt, E, Starr, M (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: pp. 463-464 CrossRef
15. Richter, M, Rosselló-Móra, R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci 106: pp. 19126-19131
文摘
A polyphasic taxonomic study was performed on a strain, designated FHC16T, which was isolated from surface seawater collected from the South China Sea. Cells of strain FHC16T are Gram stain-negative, oxidase- and catalase-positive and non-motile rods. Growth was observed at 15-7?°C (optimum, 25-0?°C), at pH 6.0-.0 (optimum, pH 7.0) and in the presence of 0-?? (w/v) NaCl (optimum, 3?%). 16S rRNA gene sequence analysis showed that strain FHC16T is most closely related to Tamlana sedimentorum JCM 19808T (98.2?% sequence similarity). The ANI value between strain FHC16T and T. sedimentorum JCM 19808T was found to be 81.82-1.81?%. The DNA–DNA hybridization estimated value between strain FHC16T and T. sedimentorum JCM 19808T was determined to be 25.8?±?2.41?%. The principal fatty acids (>5?% of the total) were found to be iso-C15:0, iso G-C15:1, iso-C17:0 3-OH, iso-C15:0 3-OH and summed feature 3 (comprising C16:1 ω7c/C16:1 ω6c). The strain was found to have MK-6 as the major respiratory menaquinone, which is consistent with the other three recognized Tamlana species, T. sedimentorum, Tamlana crocina and Tamlana agarivorans. The polar lipids were found to comprise phosphatidylethanolamine, one unidentified aminophospholipid, two unidentified aminolipids and seven unidentified lipids. The G+C content of the chromosomal DNA was determined to be 34.2?mol%. On the basis of phenotypic, chemotaxonomic and molecular data, strain FHC16T is considered to represent a novel species of the genus Tamlana, for which the name Tamlana nanhaiensis sp. nov. is proposed. The type strain is FHC16T ( \( = \) LMG 27420T?=?CGMCC 1.12469T?=?MCCC 1A06648T).