Assessing antifreeze activity of AFGP 8 using domain recognition software
- 作者：Jessica Jackman ; Matthew Noestheden ; Doug Moffat ; John P. Pezacki ; Scott Findlay ; Robert N. Ben
- 关键词：Antifreeze glycoprotein ; Biological antifreeze ; Recrystallization-inhibition activity ; High-throughput analysis
- 刊名：Biochemical and Biophysical Research Communications
- 出版年：2007
- 期刊代码：159_0006291x
- 类别：bio
- 出版时间：9 March 2007
- 卷：354
- 期：2
- 页码：340-344
- 文件大小：269 K
摘要
Domain recognition software was employed to assess recrystallization-inhibition (RI) activity as an index of antifreeze potential. This represents a key step in the development of a high-throughput analysis for RI activity. Analysis of measurement error indicates an average coefficient of variation for individual crystals of about 8%, which is very small in relation to other sources of variation. Our analysis demonstrates an inverse correlation between AFGP 8 concentration and average crystal size with consistently small, but detectable differences in average crystal size at the edge and centre of the ice wafer. Sensitivity analysis using Monte Carlo re-sampling methods indicate that measuring of 12–15 crystals per field of view are sufficient to obtain accurate estimates of the first two moments (mean and variance) of the crystal size distribution, thereby greatly reducing the time required to assess recrystallization activity. These results suggest that this method has considerable potential for high-throughput analysis of RI activity.